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The map label for this gene is tyrR [H]

Identifier: 148379187

GI number: 148379187

Start: 1325403

End: 1326605

Strand: Direct

Name: tyrR [H]

Synonym: CBO1204

Alternate gene names: 148379187

Gene position: 1325403-1326605 (Clockwise)

Preceding gene: 148379186

Following gene: 148379188

Centisome position: 34.1

GC content: 29.26

Gene sequence:

>1203_bases
ATGAAAAGTATAGAAGAACAAATAAAAATAATATCTAAAGGTGTAGATGAGATTATAAATGTAGAGGATTTAAAAAGTAA
ATTAGAAAAATCACAAAAGACAGGAAAACCTATGACAGTTAAATTAGGATTAGATCCTACAGCACCTGATATTCATATAG
GTCATTCAGTAGTTTTAAGAAAAATAAGACAACTACAGGATTTAGGACATAGAGCAGTTATAATAATAGGAGACTTTACA
GGAAGAATAGGAGATCCAACAGGAAAGTCTAAAACTAGAAAACCATTGACACAAGATGAAGTTATGTTTAATGCTAAAAC
CTATGAAGAACAAATATTTAAAATAATAGATAAAGATAAGACTGATTTAAAATTTAATAGCGAATGGTTAGGAAAATTAT
CTCTAAGAGATACAATAGAGTTAACTTCAAAGTATACAGTGGCTAGAATGCTTGAAAGAGAAGATTTCAAAAAGAGATTT
GAAAGTCACTCTAGCATAGGAATACACGAATTCTTTTACCCATTATTACAAGCCTTTGATTCTGTTAGTCTAAAGGCGGA
TATAGAATTAGGAGGAACAGACCAAAGATTCAACCTTCTTATGGGAAGAACTATACAAAAGGATTTTGATCAAGAAAGCC
AAGTAGCTATTCTTATGCCATTATTAGAAGGAACAGATGGAAAAGACAAAATGAGCAAAAGTTTAGGAAACTATATAGGA
ATAAATGAAGATGCCAATGATATATACGGAAAGGTTATGTCTATACCAGATGGAATGATAGTTAAATACTATGAATTAGC
TACAGACATACATCCAGATGAAGTAGCAAAAATAAAAGCAAGATTAGGAGAGGAAAAGGTTAATCCAAGAGATATTAAAA
TGGAACTTGCTAAAGAAATAGTAAGACTATATCATGGAGAAGAAGCATCTGTAAAAGCAGAAGTAAACTTCAAAAATATA
TTCCAACAAGGTAATATACCAGAAGATATAGATATAATAAAGGTAAATTTAACTGAAACAAATATAGTAGACTTAATAGT
TAAAGCAAAATTTGCTCCTAGTAAAAACGAAGCTAGAAGATTAGTAAAACAAGGGGCGGTAAAAATAAATGGAGAAAAAG
TAGATGAAGAATGTAAAGTAAAAAATGAAGATATACTTCAAGTAGGAAAGAAGAAGTTTATAAAAATATTAAGTCAAAAT
TAA

Upstream 100 bases:

>100_bases
CGCTTAGAAAATTATGATTTAAATCTAAAAATAATAAAAATATTACAAGTACCATATGCATATGGCCTTACAAAAAATAT
AATTTTAGGAGGCTATAAAA

Downstream 100 bases:

>100_bases
CTTAATAAAAATGAATCATTATTTATATCATGGATATAGATTGAAAAATTTAATAATATTTAAAAACATTATCATTTAAT
TTAAAATGATAATGTTTTTT

Product: tyrosyl-tRNA synthetase

Products: NA

Alternate protein names: Tyrosine--tRNA ligase 2; TyrRS 2 [H]

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MKSIEEQIKIISKGVDEIINVEDLKSKLEKSQKTGKPMTVKLGLDPTAPDIHIGHSVVLRKIRQLQDLGHRAVIIIGDFT
GRIGDPTGKSKTRKPLTQDEVMFNAKTYEEQIFKIIDKDKTDLKFNSEWLGKLSLRDTIELTSKYTVARMLEREDFKKRF
ESHSSIGIHEFFYPLLQAFDSVSLKADIELGGTDQRFNLLMGRTIQKDFDQESQVAILMPLLEGTDGKDKMSKSLGNYIG
INEDANDIYGKVMSIPDGMIVKYYELATDIHPDEVAKIKARLGEEKVNPRDIKMELAKEIVRLYHGEEASVKAEVNFKNI
FQQGNIPEDIDIIKVNLTETNIVDLIVKAKFAPSKNEARRLVKQGAVKINGEKVDEECKVKNEDILQVGKKKFIKILSQN

Sequences:

>Translated_400_residues
MKSIEEQIKIISKGVDEIINVEDLKSKLEKSQKTGKPMTVKLGLDPTAPDIHIGHSVVLRKIRQLQDLGHRAVIIIGDFT
GRIGDPTGKSKTRKPLTQDEVMFNAKTYEEQIFKIIDKDKTDLKFNSEWLGKLSLRDTIELTSKYTVARMLEREDFKKRF
ESHSSIGIHEFFYPLLQAFDSVSLKADIELGGTDQRFNLLMGRTIQKDFDQESQVAILMPLLEGTDGKDKMSKSLGNYIG
INEDANDIYGKVMSIPDGMIVKYYELATDIHPDEVAKIKARLGEEKVNPRDIKMELAKEIVRLYHGEEASVKAEVNFKNI
FQQGNIPEDIDIIKVNLTETNIVDLIVKAKFAPSKNEARRLVKQGAVKINGEKVDEECKVKNEDILQVGKKKFIKILSQN
>Mature_400_residues
MKSIEEQIKIISKGVDEIINVEDLKSKLEKSQKTGKPMTVKLGLDPTAPDIHIGHSVVLRKIRQLQDLGHRAVIIIGDFT
GRIGDPTGKSKTRKPLTQDEVMFNAKTYEEQIFKIIDKDKTDLKFNSEWLGKLSLRDTIELTSKYTVARMLEREDFKKRF
ESHSSIGIHEFFYPLLQAFDSVSLKADIELGGTDQRFNLLMGRTIQKDFDQESQVAILMPLLEGTDGKDKMSKSLGNYIG
INEDANDIYGKVMSIPDGMIVKYYELATDIHPDEVAKIKARLGEEKVNPRDIKMELAKEIVRLYHGEEASVKAEVNFKNI
FQQGNIPEDIDIIKVNLTETNIVDLIVKAKFAPSKNEARRLVKQGAVKINGEKVDEECKVKNEDILQVGKKKFIKILSQN

Specific function: Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction:tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) [H]

COG id: COG0162

COG function: function code J; Tyrosyl-tRNA synthetase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI94681057, Length=410, Percent_Identity=27.3170731707317, Blast_Score=126, Evalue=3e-29,
Organism=Escherichia coli, GI1787925, Length=423, Percent_Identity=25.531914893617, Blast_Score=132, Evalue=3e-32,
Organism=Caenorhabditis elegans, GI25145802, Length=373, Percent_Identity=28.1501340482574, Blast_Score=124, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI25145805, Length=308, Percent_Identity=25.3246753246753, Blast_Score=70, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6325160, Length=421, Percent_Identity=25.1781472684086, Blast_Score=101, Evalue=2e-22,
Organism=Drosophila melanogaster, GI20130383, Length=412, Percent_Identity=25.7281553398058, Blast_Score=136, Evalue=2e-32,

Paralogues:

None

Copy number: 892 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 3,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001412
- InterPro:   IPR002305
- InterPro:   IPR014729
- InterPro:   IPR002942
- InterPro:   IPR002307 [H]

Pfam domain/function: PF01479 S4; PF00579 tRNA-synt_1b [H]

EC number: =6.1.1.1 [H]

Molecular weight: Translated: 45362; Mature: 45362

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: PS50889 S4 ; PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSIEEQIKIISKGVDEIINVEDLKSKLEKSQKTGKPMTVKLGLDPTAPDIHIGHSVVLR
CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHH
KIRQLQDLGHRAVIIIGDFTGRIGDPTGKSKTRKPLTQDEVMFNAKTYEEQIFKIIDKDK
HHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHEECHHHHHHHHHHHHCCCC
TDLKFNSEWLGKLSLRDTIELTSKYTVARMLEREDFKKRFESHSSIGIHEFFYPLLQAFD
CCCEECHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
SVSLKADIELGGTDQRFNLLMGRTIQKDFDQESQVAILMPLLEGTDGKDKMSKSLGNYIG
CCCEEEEEEECCCCHHHHHHHCCHHHHHCCCCCCEEEEEEHHCCCCCHHHHHHHHCCEEC
INEDANDIYGKVMSIPDGMIVKYYELATDIHPDEVAKIKARLGEEKVNPRDIKMELAKEI
CCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
VRLYHGEEASVKAEVNFKNIFQQGNIPEDIDIIKVNLTETNIVDLIVKAKFAPSKNEARR
HHHHCCCCCCEEEEECHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCHHHHHH
LVKQGAVKINGEKVDEECKVKNEDILQVGKKKFIKILSQN
HHHHCCEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKSIEEQIKIISKGVDEIINVEDLKSKLEKSQKTGKPMTVKLGLDPTAPDIHIGHSVVLR
CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHH
KIRQLQDLGHRAVIIIGDFTGRIGDPTGKSKTRKPLTQDEVMFNAKTYEEQIFKIIDKDK
HHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHEECHHHHHHHHHHHHCCCC
TDLKFNSEWLGKLSLRDTIELTSKYTVARMLEREDFKKRFESHSSIGIHEFFYPLLQAFD
CCCEECHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
SVSLKADIELGGTDQRFNLLMGRTIQKDFDQESQVAILMPLLEGTDGKDKMSKSLGNYIG
CCCEEEEEEECCCCHHHHHHHCCHHHHHCCCCCCEEEEEEHHCCCCCHHHHHHHHCCEEC
INEDANDIYGKVMSIPDGMIVKYYELATDIHPDEVAKIKARLGEEKVNPRDIKMELAKEI
CCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
VRLYHGEEASVKAEVNFKNIFQQGNIPEDIDIIKVNLTETNIVDLIVKAKFAPSKNEARR
HHHHCCCCCCEEEEECHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCHHHHHH
LVKQGAVKINGEKVDEECKVKNEDILQVGKKKFIKILSQN
HHHHCCEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]