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The map label for this gene is ydiU [C]

Identifier: 148379179

GI number: 148379179

Start: 1312961

End: 1314436

Strand: Direct

Name: ydiU [C]

Synonym: CBO1195

Alternate gene names: 148379179

Gene position: 1312961-1314436 (Clockwise)

Preceding gene: 148379178

Following gene: 148379180

Centisome position: 33.78

GC content: 38.01

Gene sequence:

>1476_bases
ATGAAAGAAAGAAAAGTAATAATAAAAACAGGCTTGAATTTAGAAAATAGCTATACTAGCCTTCCAGAAATATTTTTTAC
TAGACAAAGCCCAAGCCGTGTACCTTCACCAAAATTAGCTGTATTGAATTATTCGTTAATAACATCCTTGGGACTAAATG
CCCAAGTATTACAAAGTGCTGATGGAGTAGAGATACTTGCAGGAAACAAGACTCCAGAAGAGGCTATACCTATATCTCAA
GCATATGCAGGACATCAATTTGGTCATTTTACCATGTTGGGTGATGGAAGAGCTATTCTTTTAGGGGAACATATCACTCC
ACAAGGTGAGAGATTTGATATTCAGCTTAAGGGTTCAGGTAAAACTCCATATTCACGAGGAGGAGATGGGAAAGCTGCAT
TAGGTCCGATGCTAAGAGAATATATTATAAGTGAGGCAATGAATGCATTGGGAATTCCCACCACTCGTAGTCTAGCCGTA
GTTACAACAGGTGAGTCAATAATGCGGGAAACTGAGCTATCCGGTGCAATACTAACTCGCGTAGCGGCCAGTCATATACG
TGTTGGTACATTTGAATACGTTTCAAGATGGGGGACAGTTGAAGAGCTTAGAGCCCTAGCTAATTATACTTTGCAAAGAC
ATTTTAAAAAAGGGTATGATAAAGAGAACCCTTATCTCTTTTTGCTTCAGGAGGTAATCGAGAAACAGGCTGAGCTTATT
GCAAAATGGCAACTGGTTGGTTTTGTTCATGGAGTAATGAATACCGATAATATGACAATTAGTGGAGAAACAATTGATTA
TGGTCCTTGTGCATTCATGGATGTATATGATCCTGAAACTGTATTTAGTTCTATTGATATTTATGGTAGATATGCCTATG
GGAATCAACCTAATATTGCTACATGGAATCTTGCAAGGTTTGCTGAAACTCTGCTACCATTGTTGCATATTAATCCAAAT
GAGGCTATCAAAATAGCAGAGAACGCGGTTTCAGATTTTACTAAGCTGTATAAGAATAATTGGCTTTCTGGAATGAGGGC
AAAACTTGGGATATTTAACGAAGAGCTCGAGGATGAATATCTAATTGAAGATCTTCTAAGTATAATGCATAAGTATGGTG
CAGATTATACCAATACATTCCGCGCATTGACTTTTGACAATATAGAGGATACGGTACTGGGTGGTAAAGTGGAATTTGAT
AAGTGGTATAAGCTATGGCAGGAGAGACTAACAAGACAAGAAGAAGCAAAACTTTCTTCAAAGCAGCTTATGAAAAGTAG
TAATCCATCAGTAATTCCGCGTAACCACAGAGTAGAAGAAGCACTAGAGGCTGCGGTGAAAGAAGGAGACTATAGTGTTA
TGGAGAAACTTTTAGATGCTCTTTCAAAACCATATGATCACTCTAAAGAACAGGATTATTACTCTAAATTGCCTGAACCA
TCAACTTGTCCATATCAAACCTATTGTGGCACCTAA

Upstream 100 bases:

>100_bases
AACTAAAAAGAGTTTAGTTATTATAGAAGTTTATATCTAAAAAATAATAGAAACTATGATTTTGTTTCATGTAAAAAATA
AGAGAAGAAAAGGAGATACA

Downstream 100 bases:

>100_bases
TACAAAATGAGCTAGTAAAGTATATTAAGTTTTACTAGCTCATTTTATATAAAAATATAATAGAACTCTGAACTTGAAAA
TATATTAATTATATTGTATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 491; Mature: 491

Protein sequence:

>491_residues
MKERKVIIKTGLNLENSYTSLPEIFFTRQSPSRVPSPKLAVLNYSLITSLGLNAQVLQSADGVEILAGNKTPEEAIPISQ
AYAGHQFGHFTMLGDGRAILLGEHITPQGERFDIQLKGSGKTPYSRGGDGKAALGPMLREYIISEAMNALGIPTTRSLAV
VTTGESIMRETELSGAILTRVAASHIRVGTFEYVSRWGTVEELRALANYTLQRHFKKGYDKENPYLFLLQEVIEKQAELI
AKWQLVGFVHGVMNTDNMTISGETIDYGPCAFMDVYDPETVFSSIDIYGRYAYGNQPNIATWNLARFAETLLPLLHINPN
EAIKIAENAVSDFTKLYKNNWLSGMRAKLGIFNEELEDEYLIEDLLSIMHKYGADYTNTFRALTFDNIEDTVLGGKVEFD
KWYKLWQERLTRQEEAKLSSKQLMKSSNPSVIPRNHRVEEALEAAVKEGDYSVMEKLLDALSKPYDHSKEQDYYSKLPEP
STCPYQTYCGT

Sequences:

>Translated_491_residues
MKERKVIIKTGLNLENSYTSLPEIFFTRQSPSRVPSPKLAVLNYSLITSLGLNAQVLQSADGVEILAGNKTPEEAIPISQ
AYAGHQFGHFTMLGDGRAILLGEHITPQGERFDIQLKGSGKTPYSRGGDGKAALGPMLREYIISEAMNALGIPTTRSLAV
VTTGESIMRETELSGAILTRVAASHIRVGTFEYVSRWGTVEELRALANYTLQRHFKKGYDKENPYLFLLQEVIEKQAELI
AKWQLVGFVHGVMNTDNMTISGETIDYGPCAFMDVYDPETVFSSIDIYGRYAYGNQPNIATWNLARFAETLLPLLHINPN
EAIKIAENAVSDFTKLYKNNWLSGMRAKLGIFNEELEDEYLIEDLLSIMHKYGADYTNTFRALTFDNIEDTVLGGKVEFD
KWYKLWQERLTRQEEAKLSSKQLMKSSNPSVIPRNHRVEEALEAAVKEGDYSVMEKLLDALSKPYDHSKEQDYYSKLPEP
STCPYQTYCGT
>Mature_491_residues
MKERKVIIKTGLNLENSYTSLPEIFFTRQSPSRVPSPKLAVLNYSLITSLGLNAQVLQSADGVEILAGNKTPEEAIPISQ
AYAGHQFGHFTMLGDGRAILLGEHITPQGERFDIQLKGSGKTPYSRGGDGKAALGPMLREYIISEAMNALGIPTTRSLAV
VTTGESIMRETELSGAILTRVAASHIRVGTFEYVSRWGTVEELRALANYTLQRHFKKGYDKENPYLFLLQEVIEKQAELI
AKWQLVGFVHGVMNTDNMTISGETIDYGPCAFMDVYDPETVFSSIDIYGRYAYGNQPNIATWNLARFAETLLPLLHINPN
EAIKIAENAVSDFTKLYKNNWLSGMRAKLGIFNEELEDEYLIEDLLSIMHKYGADYTNTFRALTFDNIEDTVLGGKVEFD
KWYKLWQERLTRQEEAKLSSKQLMKSSNPSVIPRNHRVEEALEAAVKEGDYSVMEKLLDALSKPYDHSKEQDYYSKLPEP
STCPYQTYCGT

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family

Homologues:

Organism=Homo sapiens, GI32880229, Length=396, Percent_Identity=39.6464646464646, Blast_Score=259, Evalue=4e-69,
Organism=Escherichia coli, GI1787999, Length=467, Percent_Identity=38.7580299785867, Blast_Score=328, Evalue=3e-91,
Organism=Saccharomyces cerevisiae, GI6325034, Length=335, Percent_Identity=33.134328358209, Blast_Score=169, Evalue=1e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1195_CLOBH (A5I133)

Other databases:

- EMBL:   CP000727
- EMBL:   AM412317
- RefSeq:   YP_001253720.1
- RefSeq:   YP_001387105.1
- STRING:   A5I133
- GeneID:   5185450
- GeneID:   5399872
- GenomeReviews:   AM412317_GR
- GenomeReviews:   CP000727_GR
- KEGG:   cbh:CLC_1238
- KEGG:   cbo:CBO1195
- eggNOG:   COG0397
- HOGENOM:   HBG683993
- OMA:   RRDIQLK
- ProtClustDB:   CLSK971881
- BioCyc:   CBOT36826:CBO1195-MONOMER
- BioCyc:   CBOT441771:CLC_1238-MONOMER
- HAMAP:   MF_00692
- InterPro:   IPR003846

Pfam domain/function: PF02696 UPF0061

EC number: NA

Molecular weight: Translated: 55227; Mature: 55227

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKERKVIIKTGLNLENSYTSLPEIFFTRQSPSRVPSPKLAVLNYSLITSLGLNAQVLQSA
CCCCEEEEEECCCCCCCCCCCCHHEEECCCCCCCCCCCEEEEEHHHHHHCCCCHHHHHCC
DGVEILAGNKTPEEAIPISQAYAGHQFGHFTMLGDGRAILLGEHITPQGERFDIQLKGSG
CCEEEEECCCCCHHHCCCHHHHCCCCCCEEEEECCCCEEEEECCCCCCCCEEEEEEECCC
KTPYSRGGDGKAALGPMLREYIISEAMNALGIPTTRSLAVVTTGESIMRETELSGAILTR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHH
VAASHIRVGTFEYVSRWGTVEELRALANYTLQRHFKKGYDKENPYLFLLQEVIEKQAELI
HHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHH
AKWQLVGFVHGVMNTDNMTISGETIDYGPCAFMDVYDPETVFSSIDIYGRYAYGNQPNIA
HHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEECCCHHHHHHHHHHEEEEECCCCCCCE
TWNLARFAETLLPLLHINPNEAIKIAENAVSDFTKLYKNNWLSGMRAKLGIFNEELEDEY
EEHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
LIEDLLSIMHKYGADYTNTFRALTFDNIEDTVLGGKVEFDKWYKLWQERLTRQEEAKLSS
HHHHHHHHHHHHCCCHHHCEEEEEECCCCHHHCCCEECHHHHHHHHHHHHHHHHHHHHHH
KQLMKSSNPSVIPRNHRVEEALEAAVKEGDYSVMEKLLDALSKPYDHSKEQDYYSKLPEP
HHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCC
STCPYQTYCGT
CCCCCCCCCCC
>Mature Secondary Structure
MKERKVIIKTGLNLENSYTSLPEIFFTRQSPSRVPSPKLAVLNYSLITSLGLNAQVLQSA
CCCCEEEEEECCCCCCCCCCCCHHEEECCCCCCCCCCCEEEEEHHHHHHCCCCHHHHHCC
DGVEILAGNKTPEEAIPISQAYAGHQFGHFTMLGDGRAILLGEHITPQGERFDIQLKGSG
CCEEEEECCCCCHHHCCCHHHHCCCCCCEEEEECCCCEEEEECCCCCCCCEEEEEEECCC
KTPYSRGGDGKAALGPMLREYIISEAMNALGIPTTRSLAVVTTGESIMRETELSGAILTR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHH
VAASHIRVGTFEYVSRWGTVEELRALANYTLQRHFKKGYDKENPYLFLLQEVIEKQAELI
HHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHH
AKWQLVGFVHGVMNTDNMTISGETIDYGPCAFMDVYDPETVFSSIDIYGRYAYGNQPNIA
HHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEECCCHHHHHHHHHHEEEEECCCCCCCE
TWNLARFAETLLPLLHINPNEAIKIAENAVSDFTKLYKNNWLSGMRAKLGIFNEELEDEY
EEHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
LIEDLLSIMHKYGADYTNTFRALTFDNIEDTVLGGKVEFDKWYKLWQERLTRQEEAKLSS
HHHHHHHHHHHHCCCHHHCEEEEEECCCCHHHCCCEECHHHHHHHHHHHHHHHHHHHHHH
KQLMKSSNPSVIPRNHRVEEALEAAVKEGDYSVMEKLLDALSKPYDHSKEQDYYSKLPEP
HHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCC
STCPYQTYCGT
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA