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The map label for this gene is patM [H]

Identifier: 148379137

GI number: 148379137

Start: 1263368

End: 1264033

Strand: Direct

Name: patM [H]

Synonym: CBO1150

Alternate gene names: 148379137

Gene position: 1263368-1264033 (Clockwise)

Preceding gene: 148379136

Following gene: 148379138

Centisome position: 32.5

GC content: 29.58

Gene sequence:

>666_bases
ATGAATTTTGATTTTCAGTGGTTTATTAATTTATTTCCAATTGTTTTACCTGCACTAGGCTTAACAATTAAAATATCTTT
GGTGTCTTTGATATTTACAGTAATATTATCTATTATAATATCTATTATAAGATATTATAAAATATATGGATTATATCAAA
TTTTTGGTTTATATATTACATTTTTTAGGGCAACACCTCTTGTAGCCCAGCTATTTATATTATATTTTGGATTTCCGTGT
ATAATTCCAGCACTAAAATCTATGACAGCATTCCAAGCAACTGTAATTGCTCTTACATTAAATACAGCCTCTTTTATGGC
AGAAACCTTAAGAGCATCCTTAGAATCTGTTGATGTAGGACAACTTGAAGCTTGTTATTCAATGGGGATGACTAGGTATC
AGACAATGATGCGTGTTGTCCTGCCACAAGCATTTGTTGTAGCTCTTCCATCTATTGGGAATCAATTTATTGGTATTATT
AAAGGATCTGCATTAGGATTTACAGTAGGACTTGCAGATATAATGGCAAAAGCTAAAATGGAGGCGGCATTAAGTATTCG
TTTTTTTGAAGCATATTTATGTGTAACGCTAATTTATTTGGTAATTGTTATTTTTGTAGAAAAAATTCAAAGATTATTAG
AAAAAAGGATTGAAAAATTCTGTTAA

Upstream 100 bases:

>100_bases
AGGTATGGGAACCCCTAAAGACATATTTCAAAATTGTACAAATGAGCGAATTAAAAAATTTGTGAATACAGTAACTGCGA
ATAGCTTGGAGGACAAATAG

Downstream 100 bases:

>100_bases
CGTATAAATTTTAAATTTATATAAATTATATTAAAAATAGGAGGAACTATAAAATGAAAAACATTAAAAAGGCATTTTTA
TTTGTAGTATTTATTTGTAT

Product: ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MNFDFQWFINLFPIVLPALGLTIKISLVSLIFTVILSIIISIIRYYKIYGLYQIFGLYITFFRATPLVAQLFILYFGFPC
IIPALKSMTAFQATVIALTLNTASFMAETLRASLESVDVGQLEACYSMGMTRYQTMMRVVLPQAFVVALPSIGNQFIGII
KGSALGFTVGLADIMAKAKMEAALSIRFFEAYLCVTLIYLVIVIFVEKIQRLLEKRIEKFC

Sequences:

>Translated_221_residues
MNFDFQWFINLFPIVLPALGLTIKISLVSLIFTVILSIIISIIRYYKIYGLYQIFGLYITFFRATPLVAQLFILYFGFPC
IIPALKSMTAFQATVIALTLNTASFMAETLRASLESVDVGQLEACYSMGMTRYQTMMRVVLPQAFVVALPSIGNQFIGII
KGSALGFTVGLADIMAKAKMEAALSIRFFEAYLCVTLIYLVIVIFVEKIQRLLEKRIEKFC
>Mature_221_residues
MNFDFQWFINLFPIVLPALGLTIKISLVSLIFTVILSIIISIIRYYKIYGLYQIFGLYITFFRATPLVAQLFILYFGFPC
IIPALKSMTAFQATVIALTLNTASFMAETLRASLESVDVGQLEACYSMGMTRYQTMMRVVLPQAFVVALPSIGNQFIGII
KGSALGFTVGLADIMAKAKMEAALSIRFFEAYLCVTLIYLVIVIFVEKIQRLLEKRIEKFC

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=219, Percent_Identity=35.1598173515982, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI1787030, Length=218, Percent_Identity=27.5229357798165, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI1786874, Length=238, Percent_Identity=26.890756302521, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1787086, Length=217, Percent_Identity=28.5714285714286, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1787087, Length=230, Percent_Identity=26.0869565217391, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788645, Length=167, Percent_Identity=31.1377245508982, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1786873, Length=220, Percent_Identity=24.0909090909091, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI87082239, Length=163, Percent_Identity=26.9938650306748, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI48994930, Length=212, Percent_Identity=25.4716981132075, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788646, Length=215, Percent_Identity=27.906976744186, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24889; Mature: 24889

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFDFQWFINLFPIVLPALGLTIKISLVSLIFTVILSIIISIIRYYKIYGLYQIFGLYIT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFRATPLVAQLFILYFGFPCIIPALKSMTAFQATVIALTLNTASFMAETLRASLESVDVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
QLEACYSMGMTRYQTMMRVVLPQAFVVALPSIGNQFIGIIKGSALGFTVGLADIMAKAKM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHH
EAALSIRFFEAYLCVTLIYLVIVIFVEKIQRLLEKRIEKFC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNFDFQWFINLFPIVLPALGLTIKISLVSLIFTVILSIIISIIRYYKIYGLYQIFGLYIT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFRATPLVAQLFILYFGFPCIIPALKSMTAFQATVIALTLNTASFMAETLRASLESVDVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
QLEACYSMGMTRYQTMMRVVLPQAFVVALPSIGNQFIGIIKGSALGFTVGLADIMAKAKM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHH
EAALSIRFFEAYLCVTLIYLVIVIFVEKIQRLLEKRIEKFC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA