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The map label for this gene is pocR [H]

Identifier: 148379034

GI number: 148379034

Start: 1145714

End: 1146472

Strand: Reverse

Name: pocR [H]

Synonym: CBO1044

Alternate gene names: 148379034

Gene position: 1146472-1145714 (Counterclockwise)

Preceding gene: 148379043

Following gene: 148379033

Centisome position: 29.5

GC content: 24.77

Gene sequence:

>759_bases
TTGTCTGATGCAAATAAACATATATGTTCTATTGCTGAAAAGTTCTTTTTATGTACTAATATTCCAATAAAGTCTTTTAG
CTACAAAGGTGACTTAATAGATTCCAGGGGATATAATTACATGTTTCAAGATTTATTTGATGATAATAATATCTATGAAA
AATTAGATAAGGATTCTATAACTAAAAATGGCTACTACACTATAAATATTAATGCTTTAAATAAAATTAATTTTACAGCT
TTTTATATTTGCCCTAAAACTGTTCATAAAGGTGTATATATCATGGGACCATATTCTTCATATAAAGGAAATAACAAGGG
TATACCCTATAAGCCTCTTTGTTGTATTCCTCATTTGATTTCTCTTTTAAGAAATATAGCTCTAGATAGTAGATACATTA
AAGAAAAAGTTCTTACACGTAGAATGCCAAATAGTCTCCATATTAGAAAGGCTATAGATCTTTTAGATGCCAATTATAGT
GATGATATATCTTTAGACGATATATCTCGACATTTAAAAATAAATAAATCTTATTTTTGTTCTATCTTAAAAAAAGAAAC
TGGGAAAACTTTTTCTCAGCTTGTAAATGAAATTAGAATAGAAAAAAGTAAAGAACTTTTAACAAAAAATGATTTATCTA
TATTAGAAATTGCTCTTTCTGTTGGATTTAATAATCAAAATTATTTCAGTTCAACTTTTAAAAAATTTAATAATAAAACT
CCAATTGAATTTAGAAATGAAAACCTCATACTTCAATAG

Upstream 100 bases:

>100_bases
CATTATCAATCACATTGTACAATCTTATTTATTGTTTAACTTTAATTATATTTAGATTTTTATAACTATATTTAGATAAT
TTTAAAGGAGTGAGATATAA

Downstream 100 bases:

>100_bases
AAATAGTTTTAACACTTATGTTAATAAAATAAAAAGTGATCTATTCAAATACAAGCTGGAGATTTGTGTAATTTACAGAA
CTATTATAAAATATTACTAA

Product: AraC family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MSDANKHICSIAEKFFLCTNIPIKSFSYKGDLIDSRGYNYMFQDLFDDNNIYEKLDKDSITKNGYYTININALNKINFTA
FYICPKTVHKGVYIMGPYSSYKGNNKGIPYKPLCCIPHLISLLRNIALDSRYIKEKVLTRRMPNSLHIRKAIDLLDANYS
DDISLDDISRHLKINKSYFCSILKKETGKTFSQLVNEIRIEKSKELLTKNDLSILEIALSVGFNNQNYFSSTFKKFNNKT
PIEFRNENLILQ

Sequences:

>Translated_252_residues
MSDANKHICSIAEKFFLCTNIPIKSFSYKGDLIDSRGYNYMFQDLFDDNNIYEKLDKDSITKNGYYTININALNKINFTA
FYICPKTVHKGVYIMGPYSSYKGNNKGIPYKPLCCIPHLISLLRNIALDSRYIKEKVLTRRMPNSLHIRKAIDLLDANYS
DDISLDDISRHLKINKSYFCSILKKETGKTFSQLVNEIRIEKSKELLTKNDLSILEIALSVGFNNQNYFSSTFKKFNNKT
PIEFRNENLILQ
>Mature_251_residues
SDANKHICSIAEKFFLCTNIPIKSFSYKGDLIDSRGYNYMFQDLFDDNNIYEKLDKDSITKNGYYTININALNKINFTAF
YICPKTVHKGVYIMGPYSSYKGNNKGIPYKPLCCIPHLISLLRNIALDSRYIKEKVLTRRMPNSLHIRKAIDLLDANYSD
DISLDDISRHLKINKSYFCSILKKETGKTFSQLVNEIRIEKSKELLTKNDLSILEIALSVGFNNQNYFSSTFKKFNNKTP
IEFRNENLILQ

Specific function: Positive regulatory protein of pdu and cob operons [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790559, Length=100, Percent_Identity=30, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR018771 [H]

Pfam domain/function: PF10114 Hist_Kin_Sens; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 29213; Mature: 29082

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDANKHICSIAEKFFLCTNIPIKSFSYKGDLIDSRGYNYMFQDLFDDNNIYEKLDKDSI
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHCCCCC
TKNGYYTININALNKINFTAFYICPKTVHKGVYIMGPYSSYKGNNKGIPYKPLCCIPHLI
CCCCEEEEEEEEECEECEEEEEEEHHHHHCCEEEECCCHHCCCCCCCCCCCCHHHHHHHH
SLLRNIALDSRYIKEKVLTRRMPNSLHIRKAIDLLDANYSDDISLDDISRHLKINKSYFC
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHH
SILKKETGKTFSQLVNEIRIEKSKELLTKNDLSILEIALSVGFNNQNYFSSTFKKFNNKT
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
PIEFRNENLILQ
CCEECCCCCEEC
>Mature Secondary Structure 
SDANKHICSIAEKFFLCTNIPIKSFSYKGDLIDSRGYNYMFQDLFDDNNIYEKLDKDSI
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHCCCCC
TKNGYYTININALNKINFTAFYICPKTVHKGVYIMGPYSSYKGNNKGIPYKPLCCIPHLI
CCCCEEEEEEEEECEECEEEEEEEHHHHHCCEEEECCCHHCCCCCCCCCCCCHHHHHHHH
SLLRNIALDSRYIKEKVLTRRMPNSLHIRKAIDLLDANYSDDISLDDISRHLKINKSYFC
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHH
SILKKETGKTFSQLVNEIRIEKSKELLTKNDLSILEIALSVGFNNQNYFSSTFKKFNNKT
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
PIEFRNENLILQ
CCEECCCCCEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8071226; 9352910; 11677609; 8501034 [H]