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The map label for this gene is ycbL [H]

Identifier: 148379031

GI number: 148379031

Start: 1142345

End: 1143046

Strand: Direct

Name: ycbL [H]

Synonym: CBO1041

Alternate gene names: 148379031

Gene position: 1142345-1143046 (Clockwise)

Preceding gene: 148379030

Following gene: 148379032

Centisome position: 29.39

GC content: 30.48

Gene sequence:

>702_bases
ATGAAGAAACTCTTTAAAATATTAGTTGTAGATGATGAAGAAAGGATATTAGATGTGGTAAAAGCTTATTTAGAAAAAGA
AGATTATGAAGTGATAACTGCAATGGATGGTGAAGAAGCAATTAAGTTATTTAAAGAAATATCATTTCATTTAGTTATAT
TGGATTTAATGCTACCAAAGATATCTGGTGAAGAGGTATGTTCAAAAATAAGAGAATTTTCTAATGTTCTAATTATTATG
CTTACAGCAAAGGTAGAGGAAGAGGATAAGCTAGAAGGTCTTTCTATAGGAGCAGATGATTATCTTACAAAACCTTTTAG
TGTAAGGGAGCTTGTGGCAAGAGTAAAGGCTCTTATTAGAAGAGCCTATAGAGGAAAGTATCCATTGGCAGAGCATTTAA
TACTTAATAATGGAGACTTAGAAGTTGACATAAGAAAAATGAAAGTATTAAAAAACGGAAAGGTGGTTACATTAACACCT
TATGAGTTTAAAGTGCTTGTTTCACTATTAACTAATCCAGGGCAGGTTTTTACTAGAGAACAGTTAGTTGAACAAGCTTT
TGGATATGATTATGAAAGTTTTGATAGGACTGTAGATACTTATATAAAAAATATAAGACAAAAGATAGAAGATAATCCTA
AAGCCCCTAACTATATTACTACTGTATATGGAGTTGGATACAGATTTGGAGGAAAAAATTAA

Upstream 100 bases:

>100_bases
GCTGAAGAGTTCTAATACATACTAAGTTTATAAACATTAAGAACATTATCAATAATGGTAATGGGATGGAATTTAAATAT
AAATGGTTGGGAGAGAAGAT

Downstream 100 bases:

>100_bases
TGAAAATGTCTTTAAAGAAAAAACTTTCTTTAGGATTTTTAATTGCGGTTATAGGTTCAATAATAATTGCTAGTTCCATA
TCTAATTATATGATAAATAA

Product: DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MKKLFKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKEISFHLVILDLMLPKISGEEVCSKIREFSNVLIIM
LTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYRGKYPLAEHLILNNGDLEVDIRKMKVLKNGKVVTLTP
YEFKVLVSLLTNPGQVFTREQLVEQAFGYDYESFDRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRFGGKN

Sequences:

>Translated_233_residues
MKKLFKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKEISFHLVILDLMLPKISGEEVCSKIREFSNVLIIM
LTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYRGKYPLAEHLILNNGDLEVDIRKMKVLKNGKVVTLTP
YEFKVLVSLLTNPGQVFTREQLVEQAFGYDYESFDRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRFGGKN
>Mature_233_residues
MKKLFKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKEISFHLVILDLMLPKISGEEVCSKIREFSNVLIIM
LTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYRGKYPLAEHLILNNGDLEVDIRKMKVLKNGKVVTLTP
YEFKVLVSLLTNPGQVFTREQLVEQAFGYDYESFDRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRFGGKN

Specific function: Member of the two-component regulatory system ycbM/ycbL [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789809, Length=232, Percent_Identity=37.9310344827586, Blast_Score=176, Evalue=1e-45,
Organism=Escherichia coli, GI1788394, Length=230, Percent_Identity=40.4347826086956, Blast_Score=169, Evalue=1e-43,
Organism=Escherichia coli, GI1786599, Length=230, Percent_Identity=36.9565217391304, Blast_Score=150, Evalue=7e-38,
Organism=Escherichia coli, GI1790863, Length=230, Percent_Identity=35.6521739130435, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI2367329, Length=232, Percent_Identity=37.5, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1786911, Length=226, Percent_Identity=34.5132743362832, Blast_Score=138, Evalue=3e-34,
Organism=Escherichia coli, GI1790860, Length=227, Percent_Identity=36.1233480176211, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI87082012, Length=225, Percent_Identity=32.4444444444444, Blast_Score=127, Evalue=6e-31,
Organism=Escherichia coli, GI1786784, Length=224, Percent_Identity=35.2678571428571, Blast_Score=123, Evalue=9e-30,
Organism=Escherichia coli, GI1789402, Length=229, Percent_Identity=31.8777292576419, Blast_Score=117, Evalue=6e-28,
Organism=Escherichia coli, GI1787229, Length=226, Percent_Identity=31.4159292035398, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1790552, Length=224, Percent_Identity=32.1428571428571, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1787375, Length=227, Percent_Identity=32.5991189427313, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI145693140, Length=233, Percent_Identity=29.6137339055794, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI1788550, Length=202, Percent_Identity=25.2475247524752, Blast_Score=67, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6322000, Length=133, Percent_Identity=27.8195488721804, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 26811; Mature: 26811

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00230 MAP1B_NEURAXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLFKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKEISFHLVILDLMLPK
CCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC
ISGEEVCSKIREFSNVLIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIR
CCHHHHHHHHHHHHCEEEEEEEECCCCCCCCCCCEECCHHHHCCCHHHHHHHHHHHHHHH
RAYRGKYPLAEHLILNNGDLEVDIRKMKVLKNGKVVTLTPYEFKVLVSLLTNPGQVFTRE
HHHCCCCCCHHHEEECCCCCEEEHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCHHHHHH
QLVEQAFGYDYESFDRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRFGGKN
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHEEECCEECCCCC
>Mature Secondary Structure
MKKLFKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKEISFHLVILDLMLPK
CCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC
ISGEEVCSKIREFSNVLIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIR
CCHHHHHHHHHHHHCEEEEEEEECCCCCCCCCCCEECCHHHHCCCHHHHHHHHHHHHHHH
RAYRGKYPLAEHLILNNGDLEVDIRKMKVLKNGKVVTLTPYEFKVLVSLLTNPGQVFTRE
HHHCCCCCCHHHEEECCCCCEEEHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCHHHHHH
QLVEQAFGYDYESFDRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRFGGKN
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHEEECCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704254; 9384377 [H]