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The map label for this gene is yobQ [H]

Identifier: 148378624

GI number: 148378624

Start: 723163

End: 723888

Strand: Reverse

Name: yobQ [H]

Synonym: CBO0623

Alternate gene names: 148378624

Gene position: 723888-723163 (Counterclockwise)

Preceding gene: 148378625

Following gene: 148378623

Centisome position: 18.62

GC content: 26.45

Gene sequence:

>726_bases
TTGAATAGTATAAGATGTGAACGTAGAATATATGATTATAAACTTAATACACATTCCCATTCATATGCTCAATTAATTTT
ACCCATTCATGGAGTGCTTTATATAGAAACTAATTATAAAAAACTACCATTAGAAGATGAGCACTTGTTTTTTCTTCCTC
CAGATTGTAAACATACCTTTGGAGCTGATAAGAGTAATGAATTTTTGGTTTTAGATATACCTACTAATATACTTAATAAA
TATGATATGGAAAAGATGGTAGGTGGAAAGGAATTTTTGTTTGATAATAAATGGAAAGCTATAAGATATTTATTATTAAA
TGAAGCTGATAATAAAAAAAGTTCTAACTCCATTAATGACTTATTCCTATACTGCTATCATTTTATTGCGGATGAAAGTA
TACCTGATTCTATAAAATATATTAATGAACATTTTACAGAAGATATAGATTTAAAAAAATTAGCAGCTATTGAGCATTAC
AATATTAGTTATTATAGTGAATGGTTCAAAAATAAAATGAAGATCTCCCCTGTTGAATATATACAAAATCTTAGAGTGAA
AAAAGCAAAGGAATTTCTCTTGAATACAGACTTAACAATTTTACAAATTTCTCAAATGGTGGGTTATGAACATAATTCAT
CACTTACTAGAGTATTTAGGCATTTAGAAAAAACATCCCCTACAGAATTTAGAAAAAAATCAAAAAACAAGCTAAAAACT
AGCTAG

Upstream 100 bases:

>100_bases
TATAGGATAGACTAAGTTAATAGAGAATAATAAATTTATGTTATAATAAGTTTATTACGTCAATTTAAAGTTATAGTATA
TAAAAAAAAGGTGGATACTC

Downstream 100 bases:

>100_bases
ATTTTAGAAAAGACTTATCTAGACAAAAAGCTATAATAAAATATAGGTATCGTTTTAAAGAACTATTTTAAAATAGTTCT
TTATTTTCTAAATAGTTTAA

Product: AraC family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MNSIRCERRIYDYKLNTHSHSYAQLILPIHGVLYIETNYKKLPLEDEHLFFLPPDCKHTFGADKSNEFLVLDIPTNILNK
YDMEKMVGGKEFLFDNKWKAIRYLLLNEADNKKSSNSINDLFLYCYHFIADESIPDSIKYINEHFTEDIDLKKLAAIEHY
NISYYSEWFKNKMKISPVEYIQNLRVKKAKEFLLNTDLTILQISQMVGYEHNSSLTRVFRHLEKTSPTEFRKKSKNKLKT
S

Sequences:

>Translated_241_residues
MNSIRCERRIYDYKLNTHSHSYAQLILPIHGVLYIETNYKKLPLEDEHLFFLPPDCKHTFGADKSNEFLVLDIPTNILNK
YDMEKMVGGKEFLFDNKWKAIRYLLLNEADNKKSSNSINDLFLYCYHFIADESIPDSIKYINEHFTEDIDLKKLAAIEHY
NISYYSEWFKNKMKISPVEYIQNLRVKKAKEFLLNTDLTILQISQMVGYEHNSSLTRVFRHLEKTSPTEFRKKSKNKLKT
S
>Mature_241_residues
MNSIRCERRIYDYKLNTHSHSYAQLILPIHGVLYIETNYKKLPLEDEHLFFLPPDCKHTFGADKSNEFLVLDIPTNILNK
YDMEKMVGGKEFLFDNKWKAIRYLLLNEADNKKSSNSINDLFLYCYHFIADESIPDSIKYINEHFTEDIDLKKLAAIEHY
NISYYSEWFKNKMKISPVEYIQNLRVKKAKEFLLNTDLTILQISQMVGYEHNSSLTRVFRHLEKTSPTEFRKKSKNKLKT
S

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787987, Length=106, Percent_Identity=33.0188679245283, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 28623; Mature: 28623

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSIRCERRIYDYKLNTHSHSYAQLILPIHGVLYIETNYKKLPLEDEHLFFLPPDCKHTF
CCCCCHHHHEEEEEECCCCCHHHHHEEEECEEEEEEECCEECCCCCCEEEEECCCCCCCC
GADKSNEFLVLDIPTNILNKYDMEKMVGGKEFLFDNKWKAIRYLLLNEADNKKSSNSIND
CCCCCCCEEEEECCHHHHHHHHHHHHCCCHHHEECCHHHHHHHHHHCCCCCCCCCCCHHH
LFLYCYHFIADESIPDSIKYINEHFTEDIDLKKLAAIEHYNISYYSEWFKNKMKISPVEY
HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCHHHH
IQNLRVKKAKEFLLNTDLTILQISQMVGYEHNSSLTRVFRHLEKTSPTEFRKKSKNKLKT
HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCC
S
C
>Mature Secondary Structure
MNSIRCERRIYDYKLNTHSHSYAQLILPIHGVLYIETNYKKLPLEDEHLFFLPPDCKHTF
CCCCCHHHHEEEEEECCCCCHHHHHEEEECEEEEEEECCEECCCCCCEEEEECCCCCCCC
GADKSNEFLVLDIPTNILNKYDMEKMVGGKEFLFDNKWKAIRYLLLNEADNKKSSNSIND
CCCCCCCEEEEECCHHHHHHHHHHHHCCCHHHEECCHHHHHHHHHHCCCCCCCCCCCHHH
LFLYCYHFIADESIPDSIKYINEHFTEDIDLKKLAAIEHYNISYYSEWFKNKMKISPVEY
HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCHHHH
IQNLRVKKAKEFLLNTDLTILQISQMVGYEHNSSLTRVFRHLEKTSPTEFRKKSKNKLKT
HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCC
S
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]