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The map label for this gene is ydcN [H]

Identifier: 148378625

GI number: 148378625

Start: 724185

End: 724736

Strand: Reverse

Name: ydcN [H]

Synonym: CBO0624

Alternate gene names: 148378625

Gene position: 724736-724185 (Counterclockwise)

Preceding gene: 148378630

Following gene: 148378624

Centisome position: 18.65

GC content: 29.35

Gene sequence:

>552_bases
ATGAATATAAATTCTATTATTGCAGAAAACCTAAAAACACTTCGTACTGAACGAAATTTAAGTTTAGGGCAACTTGCTGA
ACTATCTAATATTAGTAAAGTCATGTTATCTCAAATTGAAAAAGGTGATACTAATCCAACTATAAACACTTTATGGAAAA
TAGCTAACGGATTAAAAGTTCCTTATACTTTATTACTTGAGCAAAAAGAGTATGATACTTGTATTATAAAGAAAAGTAAT
CTTGAACCTCAGATTTCTGAAGAAGGACATTATCGGGCTTATTGCTACTACACTAATACACCTTATCGTAATTTTGAACT
TTTCCAAATTGAACTTGATGAAGGCTGCTCATATAGATCTGTAGGTCATTCTAAAAAATCAGAGGAATATATTATGGTGT
TGGAAGGGGAATTAACATTAAAAGTAAACAATGAAACTTATAAACTAAGTCCCAACGATTCAATAAGTTTCTCACCATCT
AATCAACACATATATTCTAATAATGGAAATGGAACTTTAAAGGCTACAATAACAAATTTTTATCCTGTCTAA

Upstream 100 bases:

>100_bases
GCGTTATAATATCTTACGAATGTTAAATATATTTAACGTTAGTTTTATTTTACTTTAGTTAATTATAATTGTCAACATAA
TTATAGGAGGTTATACCCTA

Downstream 100 bases:

>100_bases
TAATTAGACAGGATATTTTAAAACATTTTTGTATTATTAACATGATTTAACTTTCAGTATATAAAACATACCTCTATTTT
CAACATTTTAATTTTACCAC

Product: DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MNINSIIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPYTLLLEQKEYDTCIIKKSN
LEPQISEEGHYRAYCYYTNTPYRNFELFQIELDEGCSYRSVGHSKKSEEYIMVLEGELTLKVNNETYKLSPNDSISFSPS
NQHIYSNNGNGTLKATITNFYPV

Sequences:

>Translated_183_residues
MNINSIIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPYTLLLEQKEYDTCIIKKSN
LEPQISEEGHYRAYCYYTNTPYRNFELFQIELDEGCSYRSVGHSKKSEEYIMVLEGELTLKVNNETYKLSPNDSISFSPS
NQHIYSNNGNGTLKATITNFYPV
>Mature_183_residues
MNINSIIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPYTLLLEQKEYDTCIIKKSN
LEPQISEEGHYRAYCYYTNTPYRNFELFQIELDEGCSYRSVGHSKKSEEYIMVLEGELTLKVNNETYKLSPNDSISFSPS
NQHIYSNNGNGTLKATITNFYPV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=181, Percent_Identity=33.7016574585635, Blast_Score=105, Evalue=2e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 20905; Mature: 20905

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNINSIIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKV
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCC
PYTLLLEQKEYDTCIIKKSNLEPQISEEGHYRAYCYYTNTPYRNFELFQIELDEGCSYRS
CEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCC
VGHSKKSEEYIMVLEGELTLKVNNETYKLSPNDSISFSPSNQHIYSNNGNGTLKATITNF
CCCCCCCCCEEEEEECEEEEEECCCEEEECCCCCEEECCCCCEEEECCCCEEEEEEEEEE
YPV
CCC
>Mature Secondary Structure
MNINSIIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKV
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCC
PYTLLLEQKEYDTCIIKKSNLEPQISEEGHYRAYCYYTNTPYRNFELFQIELDEGCSYRS
CEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCC
VGHSKKSEEYIMVLEGELTLKVNNETYKLSPNDSISFSPSNQHIYSNNGNGTLKATITNF
CCCCCCCCCEEEEEECEEEEEECCCEEEECCCCCEEECCCCCEEEECCCCEEEEEEEEEE
YPV
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]