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The map label for this gene is trbF [H]

Identifier: 148360848

GI number: 148360848

Start: 623515

End: 624258

Strand: Direct

Name: trbF [H]

Synonym: LPC_2808

Alternate gene names: 148360848

Gene position: 623515-624258 (Clockwise)

Preceding gene: 148360849

Following gene: 148360847

Centisome position: 17.43

GC content: 42.07

Gene sequence:

>744_bases
ATGAAAAAAATAAAACAATGGCTTAATACCAAAAGACCTGAAAAGAAAAATGAAGCGTTAACGGAGAATCCCTTTCTTAA
TGCCAGACGCGCCTGGAATGTTCATACCGCAGGGCTTATGAAATCGGTACAGGTTTGGCAACTGGTGGGCTTAAGCAGCC
TTTTATTGGCACTGGCCGCTGTTGGTGGGCTTATATCCATTGGCAGCCAGTCCAAATTTATCCCTTTGGTATTTCAGCAG
GACGCTAATGGCAATACCTTGTCAGTCACCCGTGCGGATAGGGTTGGACAAGCCAATATTGATGATTATCGGGCGGCTGC
TGCACATTTTATTGAAAATATCCGCATGGTAAGTAGCGATGTTGAACTACAAAAGAAGGCTGTGTTTCAAGTTTATTCCT
ATTTAAATCAGAATGATGCGGCTCTAGCCAAAGTTCAGGAATTTTACAGTAATAAACAGCAGTCTAATCCCTTTGAAAGA
GCGACGCATGAAATCGTCAGCATTGAGATTCGATCAGTTCTACAAGAGTCTGATGAGACCTGGCAGGTTGATTGGGTTGA
GACGGTGAGAAATCGTGACGGAACGCTTAAAGAAAAGCCCTATGTGATGAAAGCCATGATCACGATGTATCAGGATAACG
AACTTAATGATGTCTCCAGTGAGTCTATTTTGAAAAACCCACACTTAATTTTTATCCGTGATTTTAACTGGTCCTATGAA
TTAAAGCATGGAGAACAGCGATGA

Upstream 100 bases:

>100_bases
TAGCTCGGATGAAACAGCTTGAGTTGAAGTACAGTGATGGATGGGTATCTCAGTGGCTTACGGAAAAAGGAATCCAATTG
GAACAGTACGGAGAAGCAGC

Downstream 100 bases:

>100_bases
AAAAAATAATGCTCACTTTTTGTTTATTGATGCCATTGACAGGTTTTGCCCTGGATAATAATGAGCTGGCCACTCGTTAT
TTTTCCGAAAACGATCCAAA

Product: conjugal transfer protein TrbF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MKKIKQWLNTKRPEKKNEALTENPFLNARRAWNVHTAGLMKSVQVWQLVGLSSLLLALAAVGGLISIGSQSKFIPLVFQQ
DANGNTLSVTRADRVGQANIDDYRAAAAHFIENIRMVSSDVELQKKAVFQVYSYLNQNDAALAKVQEFYSNKQQSNPFER
ATHEIVSIEIRSVLQESDETWQVDWVETVRNRDGTLKEKPYVMKAMITMYQDNELNDVSSESILKNPHLIFIRDFNWSYE
LKHGEQR

Sequences:

>Translated_247_residues
MKKIKQWLNTKRPEKKNEALTENPFLNARRAWNVHTAGLMKSVQVWQLVGLSSLLLALAAVGGLISIGSQSKFIPLVFQQ
DANGNTLSVTRADRVGQANIDDYRAAAAHFIENIRMVSSDVELQKKAVFQVYSYLNQNDAALAKVQEFYSNKQQSNPFER
ATHEIVSIEIRSVLQESDETWQVDWVETVRNRDGTLKEKPYVMKAMITMYQDNELNDVSSESILKNPHLIFIRDFNWSYE
LKHGEQR
>Mature_247_residues
MKKIKQWLNTKRPEKKNEALTENPFLNARRAWNVHTAGLMKSVQVWQLVGLSSLLLALAAVGGLISIGSQSKFIPLVFQQ
DANGNTLSVTRADRVGQANIDDYRAAAAHFIENIRMVSSDVELQKKAVFQVYSYLNQNDAALAKVQEFYSNKQQSNPFER
ATHEIVSIEIRSVLQESDETWQVDWVETVRNRDGTLKEKPYVMKAMITMYQDNELNDVSSESILKNPHLIFIRDFNWSYE
LKHGEQR

Specific function: Unknown

COG id: COG3701

COG function: function code U; Type IV secretory pathway, TrbF components

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007430 [H]

Pfam domain/function: PF04335 VirB8 [H]

EC number: NA

Molecular weight: Translated: 28332; Mature: 28332

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIKQWLNTKRPEKKNEALTENPFLNARRAWNVHTAGLMKSVQVWQLVGLSSLLLALAA
CHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VGGLISIGSQSKFIPLVFQQDANGNTLSVTRADRVGQANIDDYRAAAAHFIENIRMVSSD
HHHHHCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
VELQKKAVFQVYSYLNQNDAALAKVQEFYSNKQQSNPFERATHEIVSIEIRSVLQESDET
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
WQVDWVETVRNRDGTLKEKPYVMKAMITMYQDNELNDVSSESILKNPHLIFIRDFNWSYE
EEEHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHCCCCEEEEEECCCEEE
LKHGEQR
CCCCCCC
>Mature Secondary Structure
MKKIKQWLNTKRPEKKNEALTENPFLNARRAWNVHTAGLMKSVQVWQLVGLSSLLLALAA
CHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VGGLISIGSQSKFIPLVFQQDANGNTLSVTRADRVGQANIDDYRAAAAHFIENIRMVSSD
HHHHHCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
VELQKKAVFQVYSYLNQNDAALAKVQEFYSNKQQSNPFERATHEIVSIEIRSVLQESDET
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
WQVDWVETVRNRDGTLKEKPYVMKAMITMYQDNELNDVSSESILKNPHLIFIRDFNWSYE
EEEHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHCCCCEEEEEECCCEEE
LKHGEQR
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]