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The map label for this gene is trbE [H]

Identifier: 148360849

GI number: 148360849

Start: 620993

End: 623518

Strand: Direct

Name: trbE [H]

Synonym: LPC_2809

Alternate gene names: 148360849

Gene position: 620993-623518 (Clockwise)

Preceding gene: 295815282

Following gene: 148360848

Centisome position: 17.36

GC content: 44.1

Gene sequence:

>2526_bases
ATGATTGAATTAATCGCCTTTTTGATTAGTACTACAGGGCTTGTCATTTTGGGTACTTTGTTTTGGGAAATTCGAAGTAA
AAGCTGTGGGCACCATGTCAAAAAGCATCGAAGCCATACAGCTGGACTGGTTGATTTACTTAATTATGCGGCGGTTGTAG
ATGATGGTGTAATTGTCGGAAAAAACGGCTCTTTTATGGCGGCCTGGCTTTATCATGGCGAAGACAATGCCAATACTACC
GATGAGGCGCGTGAGATGGTGTCATTTCGGATCAATCAAGCCTTATCCGCTATGGGTAGCGGTTGGATGATTCATGTAGA
TGCCATGAGGCGTACTGCACCTGGTTACAGTGCACGGGGTTATTCTCACTTTCCTGATCCCATATCAATGGCAGTTGATG
AAGAAAGAAGGCAGCTATTTGAACAGTTGGGAACCTTATATGAAGGATATTTTGTTATCACGTTAACCTGGTATCCGCCT
GTATTGGTACAAAAACGTTTTGTTGAATTGATGTTTGATGATTCAGGGGAGCGCTTAAGCCAGAAAGCAAAAACGCATCA
ATTGATTGAGACCTTCAAGCAATCTTGCCGCAATTTTGAATCACGCATGAGTTCGGCAGTTCATCTGGAAAGGCTTGGCT
CAGATGATAAAGGCGATACAGTAATGCAGGATAACTTTCTAAGGCACTTACAGTATTGTGTCACAGGAATTAACCATCCC
GTCAATCTGCCTAAAAACCCGATTTATCTTGATGCCTTGATAGGCGGTCAGGAATTAACGCCAGGCATTACTCCGAAAAT
TGGTCGGAAGTTTGTTCAGTGCGTCGCGATTGAAGGTTTTCCCATGGAATCTTACCCTGGAATTTTAACCGCGCTATCGC
AACTACCCATTGAATATCGCTGGAACTCCCGCTTCATATTCATGGATGCGCATGAAGCTGTCGCACATTTCACTAAATTC
CGTAAAAAATGGAAGCAAAAAGTCAGAGGATTTTTTGATCAGATTTTTAATACCAATTCAGGCATTGTCGACGAAGATGC
GCTTAGCATGGTCAATGATGCGCAATCAGCCATTGCTGAAACCAATTCTGGCATGGTAGGGCAAGGTTATTACACTTCGG
TTGTTGTTTTAATGGATGAAGATCGCGCACAAGTTGAAAAAGCAGCGCTGTTTATTGAAAAGAACATCAATGCGTTGGGT
TTTGCGGCCAGAGTAGAAACCATTAATACCATGGATGCTTTTATGGGCAGCCTGCCAGGCCATGGCGTTGAAAATATCAG
ACGACCATTGATTAACACCATGAATCTGGCGGACTTATTGCCAACATCCAGCATCTGGACAGGTGAGAATAAAGCACCGT
GCCCACTGTTCCCACCCTTGTCACCACCTCTGATGCATTGCGTCACCAGTGGTAATGCACCGTTTCGCCTGAATCTTCAT
GTCAGAGACTTAGGCCATGGCATTATGTTTGGTCCAACGCGTTCTGGTAAATCAACTCACCTTGGTTTACTCGCATTGTC
TTGGCGTCGGTATAAAGATGCCCGTATTTATTCATTTGACAAAGGACTATCCATGTATCCAACCTGCAAGGCGACAGGTG
GTGAGCATTACACCATTGCTGATAAAGACTCAAAGCTTGCCTTTGCGCCCTTGCAGTTTTTAGAGTCCAAGGCAGACAGG
GCTTGGGCTATGGAGTGGATTGATACAATACTGGCATTAAATGGTTTGGATACCACCCCAGCACAGCGTAATGAAATCGG
CTATGCCATTATCAGCATGCATCAAAGTGGCTCTAAAACCTTATCCGAATTTGTCATGACCATTCAGGACGAACACATTC
GTGAAACCCTAAAGCAATACACCATCGATGGATTGATGGGGCATTTATTGGATGCTGAATGTGATGGTTTAGGTCTGTCC
TCGTTTATGACCTTTGAAATTGAGCACTTAATGGGATTAGGCGAAAAATTTGCACTGCCTGTGTTGCTCTATCTGTTTCG
ACGCATTGAAACCTCACTGGATGGCCGCCCAACGCTCATCTTACTGGATGAAGCGTGGTTGATGCTCGCGCATCCTGTCT
TTAAAAACAAGATTGCTGAATGGCTTGATTCCATGGCCAAGAAAAACTGCGCTGTATTTATGGCAACTCAACATCTTTCC
CATGCAGCAAAATCCGGCATTTTAGACATCATTGTTGAATCCACAGCCACCAAAATCTTTTTACCCAATCTATATGCAAG
AGATCCTGAAACCTGCGTGATTTATGAACGCATGGGCTTAAATCCACGTCAGATTGACATCATAGCTCAAGCCCAACCCA
AGCGTGATTACTACTATGTCAGCGAAAAAGGACAACGTCTTTATCAATTAGCATTAGGCTCTATGGCTTTGGCTTTTGTA
GGGGCTACTGATCCCGATTCTATAGCTCGGATGAAACAGCTTGAGTTGAAGTACAGTGATGGATGGGTATCTCAGTGGCT
TACGGAAAAAGGAATCCAATTGGAACAGTACGGAGAAGCAGCATGA

Upstream 100 bases:

>100_bases
CTGATCCCTATATGAGAGCGGTTTATCTGAGGCAAAGACGTTATCAGGCTTATTATCCGGCTCGTTCAACCCCTTTCAGG
GAAAACAAAAGAGGTTATCA

Downstream 100 bases:

>100_bases
AAAAAATAAAACAATGGCTTAATACCAAAAGACCTGAAAAGAAAAATGAAGCGTTAACGGAGAATCCCTTTCTTAATGCC
AGACGCGCCTGGAATGTTCA

Product: conjugal transfer protein TrbE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 841; Mature: 841

Protein sequence:

>841_residues
MIELIAFLISTTGLVILGTLFWEIRSKSCGHHVKKHRSHTAGLVDLLNYAAVVDDGVIVGKNGSFMAAWLYHGEDNANTT
DEAREMVSFRINQALSAMGSGWMIHVDAMRRTAPGYSARGYSHFPDPISMAVDEERRQLFEQLGTLYEGYFVITLTWYPP
VLVQKRFVELMFDDSGERLSQKAKTHQLIETFKQSCRNFESRMSSAVHLERLGSDDKGDTVMQDNFLRHLQYCVTGINHP
VNLPKNPIYLDALIGGQELTPGITPKIGRKFVQCVAIEGFPMESYPGILTALSQLPIEYRWNSRFIFMDAHEAVAHFTKF
RKKWKQKVRGFFDQIFNTNSGIVDEDALSMVNDAQSAIAETNSGMVGQGYYTSVVVLMDEDRAQVEKAALFIEKNINALG
FAARVETINTMDAFMGSLPGHGVENIRRPLINTMNLADLLPTSSIWTGENKAPCPLFPPLSPPLMHCVTSGNAPFRLNLH
VRDLGHGIMFGPTRSGKSTHLGLLALSWRRYKDARIYSFDKGLSMYPTCKATGGEHYTIADKDSKLAFAPLQFLESKADR
AWAMEWIDTILALNGLDTTPAQRNEIGYAIISMHQSGSKTLSEFVMTIQDEHIRETLKQYTIDGLMGHLLDAECDGLGLS
SFMTFEIEHLMGLGEKFALPVLLYLFRRIETSLDGRPTLILLDEAWLMLAHPVFKNKIAEWLDSMAKKNCAVFMATQHLS
HAAKSGILDIIVESTATKIFLPNLYARDPETCVIYERMGLNPRQIDIIAQAQPKRDYYYVSEKGQRLYQLALGSMALAFV
GATDPDSIARMKQLELKYSDGWVSQWLTEKGIQLEQYGEAA

Sequences:

>Translated_841_residues
MIELIAFLISTTGLVILGTLFWEIRSKSCGHHVKKHRSHTAGLVDLLNYAAVVDDGVIVGKNGSFMAAWLYHGEDNANTT
DEAREMVSFRINQALSAMGSGWMIHVDAMRRTAPGYSARGYSHFPDPISMAVDEERRQLFEQLGTLYEGYFVITLTWYPP
VLVQKRFVELMFDDSGERLSQKAKTHQLIETFKQSCRNFESRMSSAVHLERLGSDDKGDTVMQDNFLRHLQYCVTGINHP
VNLPKNPIYLDALIGGQELTPGITPKIGRKFVQCVAIEGFPMESYPGILTALSQLPIEYRWNSRFIFMDAHEAVAHFTKF
RKKWKQKVRGFFDQIFNTNSGIVDEDALSMVNDAQSAIAETNSGMVGQGYYTSVVVLMDEDRAQVEKAALFIEKNINALG
FAARVETINTMDAFMGSLPGHGVENIRRPLINTMNLADLLPTSSIWTGENKAPCPLFPPLSPPLMHCVTSGNAPFRLNLH
VRDLGHGIMFGPTRSGKSTHLGLLALSWRRYKDARIYSFDKGLSMYPTCKATGGEHYTIADKDSKLAFAPLQFLESKADR
AWAMEWIDTILALNGLDTTPAQRNEIGYAIISMHQSGSKTLSEFVMTIQDEHIRETLKQYTIDGLMGHLLDAECDGLGLS
SFMTFEIEHLMGLGEKFALPVLLYLFRRIETSLDGRPTLILLDEAWLMLAHPVFKNKIAEWLDSMAKKNCAVFMATQHLS
HAAKSGILDIIVESTATKIFLPNLYARDPETCVIYERMGLNPRQIDIIAQAQPKRDYYYVSEKGQRLYQLALGSMALAFV
GATDPDSIARMKQLELKYSDGWVSQWLTEKGIQLEQYGEAA
>Mature_841_residues
MIELIAFLISTTGLVILGTLFWEIRSKSCGHHVKKHRSHTAGLVDLLNYAAVVDDGVIVGKNGSFMAAWLYHGEDNANTT
DEAREMVSFRINQALSAMGSGWMIHVDAMRRTAPGYSARGYSHFPDPISMAVDEERRQLFEQLGTLYEGYFVITLTWYPP
VLVQKRFVELMFDDSGERLSQKAKTHQLIETFKQSCRNFESRMSSAVHLERLGSDDKGDTVMQDNFLRHLQYCVTGINHP
VNLPKNPIYLDALIGGQELTPGITPKIGRKFVQCVAIEGFPMESYPGILTALSQLPIEYRWNSRFIFMDAHEAVAHFTKF
RKKWKQKVRGFFDQIFNTNSGIVDEDALSMVNDAQSAIAETNSGMVGQGYYTSVVVLMDEDRAQVEKAALFIEKNINALG
FAARVETINTMDAFMGSLPGHGVENIRRPLINTMNLADLLPTSSIWTGENKAPCPLFPPLSPPLMHCVTSGNAPFRLNLH
VRDLGHGIMFGPTRSGKSTHLGLLALSWRRYKDARIYSFDKGLSMYPTCKATGGEHYTIADKDSKLAFAPLQFLESKADR
AWAMEWIDTILALNGLDTTPAQRNEIGYAIISMHQSGSKTLSEFVMTIQDEHIRETLKQYTIDGLMGHLLDAECDGLGLS
SFMTFEIEHLMGLGEKFALPVLLYLFRRIETSLDGRPTLILLDEAWLMLAHPVFKNKIAEWLDSMAKKNCAVFMATQHLS
HAAKSGILDIIVESTATKIFLPNLYARDPETCVIYERMGLNPRQIDIIAQAQPKRDYYYVSEKGQRLYQLALGSMALAFV
GATDPDSIARMKQLELKYSDGWVSQWLTEKGIQLEQYGEAA

Specific function: Unknown

COG id: COG3451

COG function: function code U; Type IV secretory pathway, VirB4 components

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbE/virB4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR004346
- InterPro:   IPR018145 [H]

Pfam domain/function: PF03135 CagE_TrbE_VirB [H]

EC number: NA

Molecular weight: Translated: 94392; Mature: 94392

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIELIAFLISTTGLVILGTLFWEIRSKSCGHHVKKHRSHTAGLVDLLNYAAVVDDGVIVG
CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEC
KNGSFMAAWLYHGEDNANTTDEAREMVSFRINQALSAMGSGWMIHVDAMRRTAPGYSARG
CCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCC
YSHFPDPISMAVDEERRQLFEQLGTLYEGYFVITLTWYPPVLVQKRFVELMFDDSGERLS
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHCCCCCHHHH
QKAKTHQLIETFKQSCRNFESRMSSAVHLERLGSDDKGDTVMQDNFLRHLQYCVTGINHP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
VNLPKNPIYLDALIGGQELTPGITPKIGRKFVQCVAIEGFPMESYPGILTALSQLPIEYR
CCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHEECCCCCCCCCHHHHHHHHCCEEEE
WNSRFIFMDAHEAVAHFTKFRKKWKQKVRGFFDQIFNTNSGIVDEDALSMVNDAQSAIAE
ECCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
TNSGMVGQGYYTSVVVLMDEDRAQVEKAALFIEKNINALGFAARVETINTMDAFMGSLPG
CCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
HGVENIRRPLINTMNLADLLPTSSIWTGENKAPCPLFPPLSPPLMHCVTSGNAPFRLNLH
CCHHHHHHHHHHHCCHHHHCCCCCEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEE
VRDLGHGIMFGPTRSGKSTHLGLLALSWRRYKDARIYSFDKGLSMYPTCKATGGEHYTIA
EEECCCCEEECCCCCCCCCEEEEEEEEHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEEE
DKDSKLAFAPLQFLESKADRAWAMEWIDTILALNGLDTTPAQRNEIGYAIISMHQSGSKT
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHH
LSEFVMTIQDEHIRETLKQYTIDGLMGHLLDAECDGLGLSSFMTFEIEHLMGLGEKFALP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHH
VLLYLFRRIETSLDGRPTLILLDEAWLMLAHPVFKNKIAEWLDSMAKKNCAVFMATQHLS
HHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHH
HAAKSGILDIIVESTATKIFLPNLYARDPETCVIYERMGLNPRQIDIIAQAQPKRDYYYV
HHHHCCCEEEEECCCCCEEEECCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCEEEE
SEKGQRLYQLALGSMALAFVGATDPDSIARMKQLELKYSDGWVSQWLTEKGIQLEQYGEA
CHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHEEECCCHHHHHHHHCCCCHHHCCCC
A
C
>Mature Secondary Structure
MIELIAFLISTTGLVILGTLFWEIRSKSCGHHVKKHRSHTAGLVDLLNYAAVVDDGVIVG
CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEC
KNGSFMAAWLYHGEDNANTTDEAREMVSFRINQALSAMGSGWMIHVDAMRRTAPGYSARG
CCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCC
YSHFPDPISMAVDEERRQLFEQLGTLYEGYFVITLTWYPPVLVQKRFVELMFDDSGERLS
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHCCCCCHHHH
QKAKTHQLIETFKQSCRNFESRMSSAVHLERLGSDDKGDTVMQDNFLRHLQYCVTGINHP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
VNLPKNPIYLDALIGGQELTPGITPKIGRKFVQCVAIEGFPMESYPGILTALSQLPIEYR
CCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHEECCCCCCCCCHHHHHHHHCCEEEE
WNSRFIFMDAHEAVAHFTKFRKKWKQKVRGFFDQIFNTNSGIVDEDALSMVNDAQSAIAE
ECCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
TNSGMVGQGYYTSVVVLMDEDRAQVEKAALFIEKNINALGFAARVETINTMDAFMGSLPG
CCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
HGVENIRRPLINTMNLADLLPTSSIWTGENKAPCPLFPPLSPPLMHCVTSGNAPFRLNLH
CCHHHHHHHHHHHCCHHHHCCCCCEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEE
VRDLGHGIMFGPTRSGKSTHLGLLALSWRRYKDARIYSFDKGLSMYPTCKATGGEHYTIA
EEECCCCEEECCCCCCCCCEEEEEEEEHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEEE
DKDSKLAFAPLQFLESKADRAWAMEWIDTILALNGLDTTPAQRNEIGYAIISMHQSGSKT
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHH
LSEFVMTIQDEHIRETLKQYTIDGLMGHLLDAECDGLGLSSFMTFEIEHLMGLGEKFALP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHH
VLLYLFRRIETSLDGRPTLILLDEAWLMLAHPVFKNKIAEWLDSMAKKNCAVFMATQHLS
HHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHH
HAAKSGILDIIVESTATKIFLPNLYARDPETCVIYERMGLNPRQIDIIAQAQPKRDYYYV
HHHHCCCEEEEECCCCCEEEECCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCEEEE
SEKGQRLYQLALGSMALAFVGATDPDSIARMKQLELKYSDGWVSQWLTEKGIQLEQYGEA
CHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHEEECCCHHHHHHHHCCCCHHHCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]