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The map label for this gene is rbn [C]

Identifier: 148360703

GI number: 148360703

Start: 779495

End: 780733

Strand: Reverse

Name: rbn [C]

Synonym: LPC_2650

Alternate gene names: 148360703

Gene position: 780733-779495 (Counterclockwise)

Preceding gene: 148360693

Following gene: 148360712

Centisome position: 21.83

GC content: 40.36

Gene sequence:

>1239_bases
ATGAATTGGAAAGAAAAAGTAAAAACTAAATTCTACTCCTGCGATCGATTTGTTCGGTTTGTTATCCAACATTTCATACA
AGACGATTGTACCTATATTGCCTCGGCATTAGCCTTTACAAGCTTACTGGCAGTCGTGCCATTGATGTCTGTGGGTTTGG
CAATATTTTCTTCATTTCCAGTATTCCAAGGTTTGGCAGAGCCGGTACAGAATTTTATTTTTGACAATTTCGTTCCGGCC
ACAGGTAAAATTGTACAAAGCTATTTACAACAATTTACTTCCCAAGTCTCAAAACTCTCAATTTGGGGTGTGGTCTTTCT
AATTTTTACCGCGTTATTGGTCATGTTTACTATTGAACGAGCCATGAATAAAATCTGGAGAGTGAGTTCATCTCGGCATG
GTGTCTCTGCCTTTTTACTCTATTGGGCTATCATTTCTCTTGCCCCGGTTTTATTAGGTTTGAGCCTGGCAGCAAGCTCC
TATTTATTCTCCATGCCAATATTGGCAGATCATCGAGCTCCTTACACTATTCTTCACTATTCCCCTTTTTTTCTTTCACT
CATCGGTTTTACCTTTTTGTACGTGGTGGTTCCCAATTGTCCTGTCAAAATCCGTCATGCTTTTTGGGGTGGCTTAGTTG
CCGCAATCTTGTTTGAATCAGCTAAGCATGCATTTGCTTATTACCTGATACGCTACAATACCTATGAGTTGTTGTATGGG
GCATTTGCCACAGTACCTATATTTTTCATTTGGGTTTATTGGGTATGGATTATTACTTTGTTGGGCGCTGAAATCAGTTA
TGCCTTTTCAGTGCATCATCAGCGTCGTGGAGGGAAGTCCCTCGATGGCTTTTCACATGCGTTGCTCTGGTTGCACCAAT
TATGGATAGCGCAACAGCATGGAAAAGGATTAAGCTTTAATGATCTGGTGGATGCCAGCAAACAACCTTTCGCTGTGGAT
GTGGATGAAATGATCAATGCTCTGATTTATCATGAACTGATCCATGCTACCGCTGATGGGCACTACATGTTAAGTCGTGA
TCTCAGTCACGTTACTCTCTATGATTTAACTCAATTATTACCTTATCGCTTGCCAACTCATCTGGAGCTGCAATATTCCA
AAGCCTCTCTCTCTGAACAATGGAGAGCCGCCTTTAAAAGGCATAATGAAGAATTGAAAAAATCCCTGGATATTAATTTG
GAAGAATTATTCAAGAAAACAGGAACAATACTCAAATGA

Upstream 100 bases:

>100_bases
ACTTTTTTAACAAAAAGATTTGAGTTTTTCGTAAATCCTAACTATACAAAAACGAGCATAAAACGATATAGTTATACAAT
AAAAATCTTGTATTTAATCC

Downstream 100 bases:

>100_bases
GCACATGTAATGGTTTCAGCTTATTCAGGTGGTCTACTAAACAATTCTCTACGACTGAATTTCTAAGTCAGTGGCATATA
CACAGTGCCCCTTGATACCT

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MNWKEKVKTKFYSCDRFVRFVIQHFIQDDCTYIASALAFTSLLAVVPLMSVGLAIFSSFPVFQGLAEPVQNFIFDNFVPA
TGKIVQSYLQQFTSQVSKLSIWGVVFLIFTALLVMFTIERAMNKIWRVSSSRHGVSAFLLYWAIISLAPVLLGLSLAASS
YLFSMPILADHRAPYTILHYSPFFLSLIGFTFLYVVVPNCPVKIRHAFWGGLVAAILFESAKHAFAYYLIRYNTYELLYG
AFATVPIFFIWVYWVWIITLLGAEISYAFSVHHQRRGGKSLDGFSHALLWLHQLWIAQQHGKGLSFNDLVDASKQPFAVD
VDEMINALIYHELIHATADGHYMLSRDLSHVTLYDLTQLLPYRLPTHLELQYSKASLSEQWRAAFKRHNEELKKSLDINL
EELFKKTGTILK

Sequences:

>Translated_412_residues
MNWKEKVKTKFYSCDRFVRFVIQHFIQDDCTYIASALAFTSLLAVVPLMSVGLAIFSSFPVFQGLAEPVQNFIFDNFVPA
TGKIVQSYLQQFTSQVSKLSIWGVVFLIFTALLVMFTIERAMNKIWRVSSSRHGVSAFLLYWAIISLAPVLLGLSLAASS
YLFSMPILADHRAPYTILHYSPFFLSLIGFTFLYVVVPNCPVKIRHAFWGGLVAAILFESAKHAFAYYLIRYNTYELLYG
AFATVPIFFIWVYWVWIITLLGAEISYAFSVHHQRRGGKSLDGFSHALLWLHQLWIAQQHGKGLSFNDLVDASKQPFAVD
VDEMINALIYHELIHATADGHYMLSRDLSHVTLYDLTQLLPYRLPTHLELQYSKASLSEQWRAAFKRHNEELKKSLDINL
EELFKKTGTILK
>Mature_412_residues
MNWKEKVKTKFYSCDRFVRFVIQHFIQDDCTYIASALAFTSLLAVVPLMSVGLAIFSSFPVFQGLAEPVQNFIFDNFVPA
TGKIVQSYLQQFTSQVSKLSIWGVVFLIFTALLVMFTIERAMNKIWRVSSSRHGVSAFLLYWAIISLAPVLLGLSLAASS
YLFSMPILADHRAPYTILHYSPFFLSLIGFTFLYVVVPNCPVKIRHAFWGGLVAAILFESAKHAFAYYLIRYNTYELLYG
AFATVPIFFIWVYWVWIITLLGAEISYAFSVHHQRRGGKSLDGFSHALLWLHQLWIAQQHGKGLSFNDLVDASKQPFAVD
VDEMINALIYHELIHATADGHYMLSRDLSHVTLYDLTQLLPYRLPTHLELQYSKASLSEQWRAAFKRHNEELKKSLDINL
EELFKKTGTILK

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family

Homologues:

Organism=Escherichia coli, GI1790319, Length=274, Percent_Identity=39.7810218978102, Blast_Score=217, Evalue=1e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2650_LEGPC (A5IGR4)

Other databases:

- EMBL:   CP000675
- RefSeq:   YP_001251910.1
- STRING:   A5IGR4
- GeneID:   5180475
- GenomeReviews:   CP000675_GR
- KEGG:   lpc:LPC_2650
- HOGENOM:   HBG451793
- OMA:   FLLYWAI
- ProtClustDB:   CLSK832305
- BioCyc:   LPNE400673:LPC_2650-MONOMER
- HAMAP:   MF_00672
- InterPro:   IPR017039
- InterPro:   IPR004664
- TIGRFAMs:   TIGR00765

Pfam domain/function: PF03631 Ribonuclease_BN

EC number: 3.1.-.- [C]

Molecular weight: Translated: 47184; Mature: 47184

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xf5c3794)-; HASH(0x103fceb8)-; HASH(0x10692084)-; HASH(0x106337f0)-; HASH(0x104debf8)-; HASH(0xde04838)-;

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCH
>Mature Secondary Structure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HHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA