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The map label for this gene is aidB [H]

Identifier: 148360550

GI number: 148360550

Start: 985465

End: 987168

Strand: Reverse

Name: aidB [H]

Synonym: LPC_2492

Alternate gene names: 148360550

Gene position: 987168-985465 (Counterclockwise)

Preceding gene: 148360549

Following gene: 148360552

Centisome position: 27.6

GC content: 39.67

Gene sequence:

>1704_bases
ATGAGCATAAAAAATGAATATGAAACAGCAAGAGACCATTTCAGGTTATGGGACAAACAACTCAAAGACAATATACTGCT
CGAAAAGTCTTGTTTAATGCACACTTACAAAACTTATTTTCCCGATGAGCCTGGTTTTATTCAACAATTGAGTCAATTTT
CCAAAGCAGTAGCTGAAGAATTAGAACCAACCGTTATGGAAAATAACCTGGATGCCAACTTGCCAAAAATCGAACAATAC
AATGCAATCGGTAAGCGCGATGATCGGGTAATCCACCATCCTGCCTATGTTCGATCCGGCGATATTATTTATGGATCCAA
TCTCATGCAATATTTGCTAAAGCCAGGGCAAATGAAAAAGACGTTGAGCCTGTTTCTGCTCTCATCGCATGCCGGGGAAG
CGGGACACAACTGCCCTATTGCCTGTTCTGCGGGAGTAATACGTGTTTTAAGTCGTTATTCCCAATTAGAGAAAACCTCA
TATTATCTCGATAAACTCACCCATCCTTCTTTCAGTTACAATTTTACTGGAGCCCAATTTTTAACTGAAATTCAAGGTGG
TTCTGACGTTGGCGCCAATGCGACCCGTGCCAGTCTGGATGAGCAAAATCAATGGCGCATTTCAGGTGAAAAATGGTTTT
GCTCCAACGCTAATGCCGATTTAATTTTAATGACGGCTCGTTTCGACGAGGAAACTCCCGGAACCAAAGGGTTGGGTTTG
TTTTTAGTGCCCAGTCGCCTGGACGATGGCAGCCCTAATCACTATTATCTTCGTCGATTAAAACAAAAAATTGGTACCCG
CACCATGGCAACCGCAGAAATAAATTTTGAAGGGGCACTAGCCTACCCTATGGGTGATGTGGCGGAAGGAATACATTTGG
TTATGGAAAATGTGTTGCATTTATCAAGGATATTCAATTCCTTCTCAGTCTTGGGTATGTCTCGTCGCGCCTATCAGATT
GCTTGCTATTATGCTAAAAACCGCCGAGCATTTAACCATCCTATTATTGAATATCCTCTGGTAAAAGAAAGTTTGGCTAA
AATAAAATCAGAAAATCTGGCTATGTTAGCCAGCGTGTTTCATATGGCTCGTTGTCAGGATGAATTAGATGCTCTTCCAG
AGCCTCAACAAACCAAATCACAACAACTCTTATTACGTACACTGGCGAATATCAACAAGTACTTTACAGCCAAACGTTCA
GTGGACAATATACATCATTGTCTCGATTTATTGGCAGGAAATGGCACCATAGAGAACTTTTCTTCATTACCAAGACTATT
AAGAGACTGTATCGTTTGCGAAAATTGGGAGGGGACGCATTTTACATTATGGATGCAAACCCTCAGAGATATGCATAAAT
TTGCAATTGATGAATTATTCATTGCCCATTTGCAACAACTTCTGGAACAAGTTCAGGATATCAACCCTCATAAGGCATTG
TTTTTCGAAAAGATAAATGAGTTAGATACAACAATAAAAACAATGAAATCAGCCAATCATGAGGAGCAAAGTCTGCATAT
AAAAACAATCATTGAACATATGGCCTCGTTGCTTGCTGCTTTATGTCTGGCTATAGAGATACAACAAGGCCAGTCGCCAG
AAACAAAACAAGCTGGATTAACTTTATTTATTCATGATCATATAGCAAGTTGTTTACTTCAACACGACGACTATATGAAA
ATACTAAATAAAATAATTGGATAG

Upstream 100 bases:

>100_bases
TAATAACCGCTATTACAATTTATTGAAAAATATTTAAGTACAACAAGAACTTAAAAAACTGTGATATCAATGCATCTATT
AGTTACCAAAGGATGGGGTA

Downstream 100 bases:

>100_bases
TTCACTCTGCAAATGCATTAACCAGCAGGCCGGGAAAAATTATTCGTAGTGTCAAACCAAAAAAATAGATTTTAAGTTTA
GCAAATTGAATTACATATAA

Product: short chain-specific acyl CoA dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 567; Mature: 566

Protein sequence:

>567_residues
MSIKNEYETARDHFRLWDKQLKDNILLEKSCLMHTYKTYFPDEPGFIQQLSQFSKAVAEELEPTVMENNLDANLPKIEQY
NAIGKRDDRVIHHPAYVRSGDIIYGSNLMQYLLKPGQMKKTLSLFLLSSHAGEAGHNCPIACSAGVIRVLSRYSQLEKTS
YYLDKLTHPSFSYNFTGAQFLTEIQGGSDVGANATRASLDEQNQWRISGEKWFCSNANADLILMTARFDEETPGTKGLGL
FLVPSRLDDGSPNHYYLRRLKQKIGTRTMATAEINFEGALAYPMGDVAEGIHLVMENVLHLSRIFNSFSVLGMSRRAYQI
ACYYAKNRRAFNHPIIEYPLVKESLAKIKSENLAMLASVFHMARCQDELDALPEPQQTKSQQLLLRTLANINKYFTAKRS
VDNIHHCLDLLAGNGTIENFSSLPRLLRDCIVCENWEGTHFTLWMQTLRDMHKFAIDELFIAHLQQLLEQVQDINPHKAL
FFEKINELDTTIKTMKSANHEEQSLHIKTIIEHMASLLAALCLAIEIQQGQSPETKQAGLTLFIHDHIASCLLQHDDYMK
ILNKIIG

Sequences:

>Translated_567_residues
MSIKNEYETARDHFRLWDKQLKDNILLEKSCLMHTYKTYFPDEPGFIQQLSQFSKAVAEELEPTVMENNLDANLPKIEQY
NAIGKRDDRVIHHPAYVRSGDIIYGSNLMQYLLKPGQMKKTLSLFLLSSHAGEAGHNCPIACSAGVIRVLSRYSQLEKTS
YYLDKLTHPSFSYNFTGAQFLTEIQGGSDVGANATRASLDEQNQWRISGEKWFCSNANADLILMTARFDEETPGTKGLGL
FLVPSRLDDGSPNHYYLRRLKQKIGTRTMATAEINFEGALAYPMGDVAEGIHLVMENVLHLSRIFNSFSVLGMSRRAYQI
ACYYAKNRRAFNHPIIEYPLVKESLAKIKSENLAMLASVFHMARCQDELDALPEPQQTKSQQLLLRTLANINKYFTAKRS
VDNIHHCLDLLAGNGTIENFSSLPRLLRDCIVCENWEGTHFTLWMQTLRDMHKFAIDELFIAHLQQLLEQVQDINPHKAL
FFEKINELDTTIKTMKSANHEEQSLHIKTIIEHMASLLAALCLAIEIQQGQSPETKQAGLTLFIHDHIASCLLQHDDYMK
ILNKIIG
>Mature_566_residues
SIKNEYETARDHFRLWDKQLKDNILLEKSCLMHTYKTYFPDEPGFIQQLSQFSKAVAEELEPTVMENNLDANLPKIEQYN
AIGKRDDRVIHHPAYVRSGDIIYGSNLMQYLLKPGQMKKTLSLFLLSSHAGEAGHNCPIACSAGVIRVLSRYSQLEKTSY
YLDKLTHPSFSYNFTGAQFLTEIQGGSDVGANATRASLDEQNQWRISGEKWFCSNANADLILMTARFDEETPGTKGLGLF
LVPSRLDDGSPNHYYLRRLKQKIGTRTMATAEINFEGALAYPMGDVAEGIHLVMENVLHLSRIFNSFSVLGMSRRAYQIA
CYYAKNRRAFNHPIIEYPLVKESLAKIKSENLAMLASVFHMARCQDELDALPEPQQTKSQQLLLRTLANINKYFTAKRSV
DNIHHCLDLLAGNGTIENFSSLPRLLRDCIVCENWEGTHFTLWMQTLRDMHKFAIDELFIAHLQQLLEQVQDINPHKALF
FEKINELDTTIKTMKSANHEEQSLHIKTIIEHMASLLAALCLAIEIQQGQSPETKQAGLTLFIHDHIASCLLQHDDYMKI
LNKIIG

Specific function: May help to prevent alkylation damage by protecting DNA and destroying alkylating agents [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Escherichia coli, GI87082384, Length=421, Percent_Identity=29.9287410926366, Blast_Score=157, Evalue=1e-39,
Organism=Caenorhabditis elegans, GI86563381, Length=418, Percent_Identity=30.3827751196172, Blast_Score=172, Evalue=3e-43,
Organism=Caenorhabditis elegans, GI86563383, Length=418, Percent_Identity=30.3827751196172, Blast_Score=172, Evalue=4e-43,
Organism=Caenorhabditis elegans, GI17538396, Length=300, Percent_Identity=26.6666666666667, Blast_Score=66, Evalue=5e-11,
Organism=Drosophila melanogaster, GI21356377, Length=263, Percent_Identity=25.4752851711027, Blast_Score=69, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M [H]

EC number: NA

Molecular weight: Translated: 64547; Mature: 64416

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKNEYETARDHFRLWDKQLKDNILLEKSCLMHTYKTYFPDEPGFIQQLSQFSKAVAEE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LEPTVMENNLDANLPKIEQYNAIGKRDDRVIHHPAYVRSGDIIYGSNLMQYLLKPGQMKK
CCCHHHCCCCCCCCCCHHHHCCCCCCCCCEEECCCEEECCCEEECCHHHHHHHCCCHHHH
TLSLFLLSSHAGEAGHNCPIACSAGVIRVLSRYSQLEKTSYYLDKLTHPSFSYNFTGAQF
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
LTEIQGGSDVGANATRASLDEQNQWRISGEKWFCSNANADLILMTARFDEETPGTKGLGL
HHHHCCCCCCCCCCHHHHCCCCCCEEECCCEEEECCCCCCEEEEEEECCCCCCCCCCCEE
FLVPSRLDDGSPNHYYLRRLKQKIGTRTMATAEINFEGALAYPMGDVAEGIHLVMENVLH
EEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEECCCHHHHHHHHHHHHHHHH
LSRIFNSFSVLGMSRRAYQIACYYAKNRRAFNHPIIEYPLVKESLAKIKSENLAMLASVF
HHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
HMARCQDELDALPEPQQTKSQQLLLRTLANINKYFTAKRSVDNIHHCLDLLAGNGTIENF
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
SSLPRLLRDCIVCENWEGTHFTLWMQTLRDMHKFAIDELFIAHLQQLLEQVQDINPHKAL
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
FFEKINELDTTIKTMKSANHEEQSLHIKTIIEHMASLLAALCLAIEIQQGQSPETKQAGL
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCE
TLFIHDHIASCLLQHDDYMKILNKIIG
EEEEHHHHHHHHHCCCHHHHHHHHHCC
>Mature Secondary Structure 
SIKNEYETARDHFRLWDKQLKDNILLEKSCLMHTYKTYFPDEPGFIQQLSQFSKAVAEE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LEPTVMENNLDANLPKIEQYNAIGKRDDRVIHHPAYVRSGDIIYGSNLMQYLLKPGQMKK
CCCHHHCCCCCCCCCCHHHHCCCCCCCCCEEECCCEEECCCEEECCHHHHHHHCCCHHHH
TLSLFLLSSHAGEAGHNCPIACSAGVIRVLSRYSQLEKTSYYLDKLTHPSFSYNFTGAQF
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
LTEIQGGSDVGANATRASLDEQNQWRISGEKWFCSNANADLILMTARFDEETPGTKGLGL
HHHHCCCCCCCCCCHHHHCCCCCCEEECCCEEEECCCCCCEEEEEEECCCCCCCCCCCEE
FLVPSRLDDGSPNHYYLRRLKQKIGTRTMATAEINFEGALAYPMGDVAEGIHLVMENVLH
EEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEECCCHHHHHHHHHHHHHHHH
LSRIFNSFSVLGMSRRAYQIACYYAKNRRAFNHPIIEYPLVKESLAKIKSENLAMLASVF
HHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
HMARCQDELDALPEPQQTKSQQLLLRTLANINKYFTAKRSVDNIHHCLDLLAGNGTIENF
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
SSLPRLLRDCIVCENWEGTHFTLWMQTLRDMHKFAIDELFIAHLQQLLEQVQDINPHKAL
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
FFEKINELDTTIKTMKSANHEEQSLHIKTIIEHMASLLAALCLAIEIQQGQSPETKQAGL
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCE
TLFIHDHIASCLLQHDDYMKILNKIIG
EEEEHHHHHHHHHCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961409; 7610040; 9278503 [H]