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The map label for this gene is dapD [H]

Identifier: 148360466

GI number: 148360466

Start: 1067748

End: 1068578

Strand: Reverse

Name: dapD [H]

Synonym: LPC_2405

Alternate gene names: 148360466

Gene position: 1068578-1067748 (Counterclockwise)

Preceding gene: 148360465

Following gene: 148360467

Centisome position: 29.88

GC content: 40.07

Gene sequence:

>831_bases
ATGAACTCACTTCAAGCTCTAATTGAACAAGCCTTTGAAAACCGTCAAAATTTATCGCTCGACACAGCCTCCTCAGATTT
GATCAATGCCATTAATGAAGTTCTCAGTGGTCTGGATAATGGCCAATTCAGAGTCGCTGAAAAAATAAATGGTGAATGGA
CAGTTCATCAATGGCTTAAAAAGGCAGTTCTTTTATCCTTTAAACTTTTCCCAAATCAAATCATAGATGCGGGGTTTTGC
CAGTTTTACGATAAAATACCGCTAAAATATACGGATTGTAGTAATGAGCAATTTTCACAATCAGGGGTAAGAGTTGTTCC
TCATGGCATGGTGCGACGTGGAGCATATATTGCCAAAAATACAGTTTTAATGCCTTCTTATGTCAATATAGGTGCTTATA
TTGATGAAGGGGTAATGGTTGATACCTGGGCAACTGTTGGTTCTTGTGCCCAAATAGGAAAAAATGTACATATATCTGGC
GGCGCAGGTATAGGAGGTGTTTTAGAACCATTACAAGCGAACCCAACCATCATTGAGGACAATTGCTTTATTGGTGCCCG
CTCTGAAATAGTGGAAGGGGTTATCGTAGAAAAAAACTCCGTCATATCAATGGGAGTATTTTTAGGCCAAAGCACTAAAA
TCTACAATCGAATCACTGGCGAAGTAAGCTACGGCAGAATTCCGGCTGGCTCAGTAGTTGTTGCAGGTAACTTGCCAAGT
CATGATGGAAGCCACAGTTTATATTGTGCTGTCATTGTGAAACAAGTGGATGAAAAAACTCGCGCGAAGGTAAGCATTAA
TGATTTACTAAGAGCCAATCAAGATGACTGA

Upstream 100 bases:

>100_bases
TCTTATTAACGATTTTCAGGCACAAAATGCATTCAAAGAATGGTTAAATGAACAATGGGCAATAAAAGATAATTTAATAG
CCTCTTTACAGGAATAAAAC

Downstream 100 bases:

>100_bases
TATTAAGCAAATTCTGACTGACCTCATTCGTTTTCCTTCTATTACACCAGAAGATGCTGGCTGCCAAAAATACATGATTC
AATTTCTGGAGCAATTGGGA

Product: 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase

Products: NA

Alternate protein names: Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase [H]

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MNSLQALIEQAFENRQNLSLDTASSDLINAINEVLSGLDNGQFRVAEKINGEWTVHQWLKKAVLLSFKLFPNQIIDAGFC
QFYDKIPLKYTDCSNEQFSQSGVRVVPHGMVRRGAYIAKNTVLMPSYVNIGAYIDEGVMVDTWATVGSCAQIGKNVHISG
GAGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEKNSVISMGVFLGQSTKIYNRITGEVSYGRIPAGSVVVAGNLPS
HDGSHSLYCAVIVKQVDEKTRAKVSINDLLRANQDD

Sequences:

>Translated_276_residues
MNSLQALIEQAFENRQNLSLDTASSDLINAINEVLSGLDNGQFRVAEKINGEWTVHQWLKKAVLLSFKLFPNQIIDAGFC
QFYDKIPLKYTDCSNEQFSQSGVRVVPHGMVRRGAYIAKNTVLMPSYVNIGAYIDEGVMVDTWATVGSCAQIGKNVHISG
GAGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEKNSVISMGVFLGQSTKIYNRITGEVSYGRIPAGSVVVAGNLPS
HDGSHSLYCAVIVKQVDEKTRAKVSINDLLRANQDD
>Mature_276_residues
MNSLQALIEQAFENRQNLSLDTASSDLINAINEVLSGLDNGQFRVAEKINGEWTVHQWLKKAVLLSFKLFPNQIIDAGFC
QFYDKIPLKYTDCSNEQFSQSGVRVVPHGMVRRGAYIAKNTVLMPSYVNIGAYIDEGVMVDTWATVGSCAQIGKNVHISG
GAGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEKNSVISMGVFLGQSTKIYNRITGEVSYGRIPAGSVVVAGNLPS
HDGSHSLYCAVIVKQVDEKTRAKVSINDLLRANQDD

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; fourth step. [C]

COG id: COG2171

COG function: function code E; Tetrahydrodipicolinate N-succinyltransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transferase hexapeptide repeat family [H]

Homologues:

Organism=Escherichia coli, GI1786362, Length=271, Percent_Identity=67.8966789667897, Blast_Score=376, Evalue=1e-106,

Paralogues:

None

Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005664
- InterPro:   IPR023180
- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: =2.3.1.117 [H]

Molecular weight: Translated: 29979; Mature: 29979

Theoretical pI: Translated: 5.65; Mature: 5.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSLQALIEQAFENRQNLSLDTASSDLINAINEVLSGLDNGQFRVAEKINGEWTVHQWLK
CCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHH
KAVLLSFKLFPNQIIDAGFCQFYDKIPLKYTDCSNEQFSQSGVRVVPHGMVRRGAYIAKN
HHHHHHHHHCCHHHHHHHHHHHHHCCCCEEECCCCCHHHCCCCEECCCHHHHCCCEEECC
TVLMPSYVNIGAYIDEGVMVDTWATVGSCAQIGKNVHISGGAGIGGVLEPLQANPTIIED
EEECCCCCCCCEEECCCEEEECHHHHHHHHHHCCEEEEECCCCCCHHHCCCCCCCCEEEC
NCFIGARSEIVEGVIVEKNSVISMGVFLGQSTKIYNRITGEVSYGRIPAGSVVVAGNLPS
CCEECCHHHHHCEEEECCCCEEEEEEEECCCHHHHHHHCCCEECCCCCCCCEEEECCCCC
HDGSHSLYCAVIVKQVDEKTRAKVSINDLLRANQDD
CCCCCCEEHHHHHHHHHHHHHHEEEHHHHHCCCCCC
>Mature Secondary Structure
MNSLQALIEQAFENRQNLSLDTASSDLINAINEVLSGLDNGQFRVAEKINGEWTVHQWLK
CCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHH
KAVLLSFKLFPNQIIDAGFCQFYDKIPLKYTDCSNEQFSQSGVRVVPHGMVRRGAYIAKN
HHHHHHHHHCCHHHHHHHHHHHHHCCCCEEECCCCCHHHCCCCEECCCHHHHCCCEEECC
TVLMPSYVNIGAYIDEGVMVDTWATVGSCAQIGKNVHISGGAGIGGVLEPLQANPTIIED
EEECCCCCCCCEEECCCEEEECHHHHHHHHHHCCEEEEECCCCCCHHHCCCCCCCCEEEC
NCFIGARSEIVEGVIVEKNSVISMGVFLGQSTKIYNRITGEVSYGRIPAGSVVVAGNLPS
CCEECCHHHHHCEEEECCCCEEEEEEEECCCHHHHHHHCCCEECCCCCCCCEEEECCCCC
HDGSHSLYCAVIVKQVDEKTRAKVSINDLLRANQDD
CCCCCCEEHHHHHHHHHHHHHHEEEHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA