Click here to switch to the map view.

The map label for this gene is ybaF [H]

Identifier: 148268660

GI number: 148268660

Start: 2391521

End: 2392327

Strand: Reverse

Name: ybaF [H]

Synonym: SaurJH9_2247

Alternate gene names: 148268660

Gene position: 2392327-2391521 (Counterclockwise)

Preceding gene: 148268661

Following gene: 148268659

Centisome position: 82.3

GC content: 31.72

Gene sequence:

>807_bases
ATGAAAAATAAATTGATTATAGGGCGATATTTACCAATTAATTCTTTTGTTCATCATCTTGATCCAAGAGCAAAGTTAAT
GTTTGTTTTTCTTTTTATTATATTAATATTTTTCTGTCATTCACCATTAACATATCTTTGGGTGTTTGCACTTATCTTAT
TCATTATGAGATTAGCAAAAATTCAATTATGGTTCCTAATCAAAGGTTTAACACCAATATTTTTCTTTTTAATCTTCACA
TTAATGATGCATATATTTTTAACTAAAGGTGGATATGTATTAGTTGAATGGCATGGCATCACGATTGAAACTAATGGTAT
TTTAGAAGGGCTATATATATCATTGCGTTTAATTGGGATTGTGATGATTGCAACAATTATGACACTATCTACAAGTCCAA
TTGATTTAACAGATGCGTTTGAAAGATTACTTGCACCACTAAAGATGTTTAAATTACCAGTTCATCAATTAAGTATGATA
ATGTCCATTGCGTTACGATTCATCCCGACGTTAATGGATGAGTTAGATAAAATTATTTTGGCGCAAAAGTCGCGTGGTTC
TGAAATAAGTTCAGGGAACATTGCAACACGTATTAAATCATTTATTCCATTACTAGTGCCACTATTCATCTCAGCTTTCC
AACGCGCCGAAGAATTAGCGGTCGCAATGGAAGTTAGGGGTTATGATGCCAATGTTAAGAGAACGAGCTACAGACAGCTT
AAATGGCAATTGAGAGATACGATATCTTTAACCATGATTATCCCAATTGCAATTATTTTATTCGTATTAAAATATTCAGG
AGTGTAA

Upstream 100 bases:

>100_bases
GTTCAGTTACAATATGACTTTGAACAAAAATATCAAACAAGATTAAAAGATATTGCCTTAACTGAAGAAGCATTTGTAAG
CTTGTATAAGGAGTGGCAAC

Downstream 100 bases:

>100_bases
ATTCATGCGTATATTAGTAGAAATTGCGTATCAAGGAAATAATTTTCTAGGCTTTCAAATTCAACAGAATGGACGTACGG
TACAGCAACAATTTGAAAAG

Product: cobalt transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MKNKLIIGRYLPINSFVHHLDPRAKLMFVFLFIILIFFCHSPLTYLWVFALILFIMRLAKIQLWFLIKGLTPIFFFLIFT
LMMHIFLTKGGYVLVEWHGITIETNGILEGLYISLRLIGIVMIATIMTLSTSPIDLTDAFERLLAPLKMFKLPVHQLSMI
MSIALRFIPTLMDELDKIILAQKSRGSEISSGNIATRIKSFIPLLVPLFISAFQRAEELAVAMEVRGYDANVKRTSYRQL
KWQLRDTISLTMIIPIAIILFVLKYSGV

Sequences:

>Translated_268_residues
MKNKLIIGRYLPINSFVHHLDPRAKLMFVFLFIILIFFCHSPLTYLWVFALILFIMRLAKIQLWFLIKGLTPIFFFLIFT
LMMHIFLTKGGYVLVEWHGITIETNGILEGLYISLRLIGIVMIATIMTLSTSPIDLTDAFERLLAPLKMFKLPVHQLSMI
MSIALRFIPTLMDELDKIILAQKSRGSEISSGNIATRIKSFIPLLVPLFISAFQRAEELAVAMEVRGYDANVKRTSYRQL
KWQLRDTISLTMIIPIAIILFVLKYSGV
>Mature_268_residues
MKNKLIIGRYLPINSFVHHLDPRAKLMFVFLFIILIFFCHSPLTYLWVFALILFIMRLAKIQLWFLIKGLTPIFFFLIFT
LMMHIFLTKGGYVLVEWHGITIETNGILEGLYISLRLIGIVMIATIMTLSTSPIDLTDAFERLLAPLKMFKLPVHQLSMI
MSIALRFIPTLMDELDKIILAQKSRGSEISSGNIATRIKSFIPLLVPLFISAFQRAEELAVAMEVRGYDANVKRTSYRQL
KWQLRDTISLTMIIPIAIILFVLKYSGV

Specific function: Unknown

COG id: COG0619

COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003339 [H]

Pfam domain/function: PF02361 CbiQ [H]

EC number: NA

Molecular weight: Translated: 30830; Mature: 30830

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKLIIGRYLPINSFVHHLDPRAKLMFVFLFIILIFFCHSPLTYLWVFALILFIMRLAK
CCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
IQLWFLIKGLTPIFFFLIFTLMMHIFLTKGGYVLVEWHGITIETNGILEGLYISLRLIGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHH
VMIATIMTLSTSPIDLTDAFERLLAPLKMFKLPVHQLSMIMSIALRFIPTLMDELDKIIL
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQKSRGSEISSGNIATRIKSFIPLLVPLFISAFQRAEELAVAMEVRGYDANVKRTSYRQL
HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
KWQLRDTISLTMIIPIAIILFVLKYSGV
HHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKNKLIIGRYLPINSFVHHLDPRAKLMFVFLFIILIFFCHSPLTYLWVFALILFIMRLAK
CCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
IQLWFLIKGLTPIFFFLIFTLMMHIFLTKGGYVLVEWHGITIETNGILEGLYISLRLIGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHH
VMIATIMTLSTSPIDLTDAFERLLAPLKMFKLPVHQLSMIMSIALRFIPTLMDELDKIIL
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQKSRGSEISSGNIATRIKSFIPLLVPLFISAFQRAEELAVAMEVRGYDANVKRTSYRQL
HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
KWQLRDTISLTMIIPIAIILFVLKYSGV
HHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]