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The map label for this gene is ycnB [H]

Identifier: 148268612

GI number: 148268612

Start: 2337278

End: 2338723

Strand: Reverse

Name: ycnB [H]

Synonym: SaurJH9_2198

Alternate gene names: 148268612

Gene position: 2338723-2337278 (Counterclockwise)

Preceding gene: 148268613

Following gene: 148268611

Centisome position: 80.46

GC content: 33.26

Gene sequence:

>1446_bases
ATGATGGCTAAAGTTGAATTAACAACCCGGAGACGAAACTTCATAGTTGCTGTTATGTTGATTAGTGCGTTTGTAGCTAT
TTTAAATCAAACATTATTAAATACAGCGTTACCTAGTATAATGAGAGAATTAAATATTAATGAAAGTACATCGCAATGGC
TAGTTACTGGGTTTATGCTTGTTAATGGCGTCATGATACCTCTGACGGCATATCTAATGGATAGAATTAAAACTAGACCT
TTATACTTAGCGGCGATGGGGACATTTTTATTAGGTTCTATTGTTGCAGCCTTAGCTCCGAATTTTGGAGTTTTAATGTT
AGCACGTGTAATTCAAGCGATGGGTGCAGGCGTACTTATGCCCTTAATGCAATTTACGTTATTTACATTGTTCAGTAAAG
AACATCGAGGTTTTGCAATGGGACTAGCAGGTTTAGTAATTCAATTTGCACCAGCAATAGGCCCTACAGTTACAGGATTA
ATTATTGATCAAGCGAGTTGGCGAGTACCATTTATTATAATTGTAGGAATTGCTTTAGTTGCCTTTGTTTTCGGCTTAGT
TTCAATCTCAAGTTACAATGAAGTGAAATATACGAAATTAGATAAGCGCTCAGTAATGTATTCAACTATTGGATTCGGGT
TAATGCTATACGCATTTAGTAGTGCAGGAGATTTAGGATTTACAAGTCCAATAGTAATAGGTGCGTTGATAATAAGTATG
GTTATTATCTATTTATTTATACGTAGACAATTTAATATTACTAATGTACTTTTAAATTTAAGGGTTTTTAAAAATAGAAC
ATTTGCATTATGTACGATTAGTTCAATGATTATAATGATGTCAATGGTTGGACCTGCGCTGCTTATACCGCTATATGTTC
AAAATAGTTTATCTTTATCTGCCTTGTTATCAGGACTTGTTATCATGCCTGGTGCAATAATAAATGGTATTATGTCAGTT
TTTACAGGTAAATTTTATGATAAGTATGGTCCTAGACCATTGATTTATACTGGTTTTACAATTTTAACAATTACTACAAT
TATGTTGTGTTTCTTGCATACAGACACATCTTATACGTATTTAATAGTCGTATATGCAATTAGAATGTTTTCAGTTTCTT
TACTCATGATGCCGATAAATACTACAGGAATTAATTCTTTGAGAAATGAAGAAATCTCACATGGCACGGCTATTATGAAC
TTTGGTCGTGTAATGGCTGGTTCACTAGGCACAGCTTTAATGGTTACATTAATGAGTTTTGGTGCAAAAATATTTTTATC
TACATCGCCATCGCATTTAACTGCAACTGAAATTAAACAGCAATCCATTGCTATAGGGGTGGATATCTCATTTGCTTTTG
TAGCTGTGCTTGTTATGGCAGCTTATGTGATAGCACTTTTTATAAGAGAACCTAAAGAAATAGAAAGTAATAGAAGGAAA
TTTTAA

Upstream 100 bases:

>100_bases
TTATGTAGTGCTTCTTTATCATTTGAGTACTACTCCCATTATGTTAATGGCTATATGTATTAAAGGGACAAGTGTATATC
TGTTTTAAAAAGGAGGAATT

Downstream 100 bases:

>100_bases
AATAATTATAGTAGTTGGTCTATTTAAAATAATAGGCTAACTGCTTTTTTTATTTAATAAAAAGTTTTATACTTTTAGTG
ATAGACTAAGCAAAAATTGT

Product: EmrB/QacA family drug resistance transporter

Products: Proton [Cytoplasm]; multidrug [Periplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 481; Mature: 481

Protein sequence:

>481_residues
MMAKVELTTRRRNFIVAVMLISAFVAILNQTLLNTALPSIMRELNINESTSQWLVTGFMLVNGVMIPLTAYLMDRIKTRP
LYLAAMGTFLLGSIVAALAPNFGVLMLARVIQAMGAGVLMPLMQFTLFTLFSKEHRGFAMGLAGLVIQFAPAIGPTVTGL
IIDQASWRVPFIIIVGIALVAFVFGLVSISSYNEVKYTKLDKRSVMYSTIGFGLMLYAFSSAGDLGFTSPIVIGALIISM
VIIYLFIRRQFNITNVLLNLRVFKNRTFALCTISSMIIMMSMVGPALLIPLYVQNSLSLSALLSGLVIMPGAIINGIMSV
FTGKFYDKYGPRPLIYTGFTILTITTIMLCFLHTDTSYTYLIVVYAIRMFSVSLLMMPINTTGINSLRNEEISHGTAIMN
FGRVMAGSLGTALMVTLMSFGAKIFLSTSPSHLTATEIKQQSIAIGVDISFAFVAVLVMAAYVIALFIREPKEIESNRRK
F

Sequences:

>Translated_481_residues
MMAKVELTTRRRNFIVAVMLISAFVAILNQTLLNTALPSIMRELNINESTSQWLVTGFMLVNGVMIPLTAYLMDRIKTRP
LYLAAMGTFLLGSIVAALAPNFGVLMLARVIQAMGAGVLMPLMQFTLFTLFSKEHRGFAMGLAGLVIQFAPAIGPTVTGL
IIDQASWRVPFIIIVGIALVAFVFGLVSISSYNEVKYTKLDKRSVMYSTIGFGLMLYAFSSAGDLGFTSPIVIGALIISM
VIIYLFIRRQFNITNVLLNLRVFKNRTFALCTISSMIIMMSMVGPALLIPLYVQNSLSLSALLSGLVIMPGAIINGIMSV
FTGKFYDKYGPRPLIYTGFTILTITTIMLCFLHTDTSYTYLIVVYAIRMFSVSLLMMPINTTGINSLRNEEISHGTAIMN
FGRVMAGSLGTALMVTLMSFGAKIFLSTSPSHLTATEIKQQSIAIGVDISFAFVAVLVMAAYVIALFIREPKEIESNRRK
F
>Mature_481_residues
MMAKVELTTRRRNFIVAVMLISAFVAILNQTLLNTALPSIMRELNINESTSQWLVTGFMLVNGVMIPLTAYLMDRIKTRP
LYLAAMGTFLLGSIVAALAPNFGVLMLARVIQAMGAGVLMPLMQFTLFTLFSKEHRGFAMGLAGLVIQFAPAIGPTVTGL
IIDQASWRVPFIIIVGIALVAFVFGLVSISSYNEVKYTKLDKRSVMYSTIGFGLMLYAFSSAGDLGFTSPIVIGALIISM
VIIYLFIRRQFNITNVLLNLRVFKNRTFALCTISSMIIMMSMVGPALLIPLYVQNSLSLSALLSGLVIMPGAIINGIMSV
FTGKFYDKYGPRPLIYTGFTILTITTIMLCFLHTDTSYTYLIVVYAIRMFSVSLLMMPINTTGINSLRNEEISHGTAIMN
FGRVMAGSLGTALMVTLMSFGAKIFLSTSPSHLTATEIKQQSIAIGVDISFAFVAVLVMAAYVIALFIREPKEIESNRRK
F

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. EmrB family [H]

Homologues:

Organism=Escherichia coli, GI1788710, Length=486, Percent_Identity=25.7201646090535, Blast_Score=141, Evalue=1e-34,
Organism=Escherichia coli, GI1789042, Length=407, Percent_Identity=26.2899262899263, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI87081983, Length=425, Percent_Identity=24, Blast_Score=111, Evalue=8e-26,
Organism=Escherichia coli, GI1790195, Length=415, Percent_Identity=23.855421686747, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI1788392, Length=489, Percent_Identity=22.9038854805726, Blast_Score=99, Evalue=9e-22,
Organism=Saccharomyces cerevisiae, GI6323735, Length=318, Percent_Identity=22.6415094339623, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004638
- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196
- InterPro:   IPR001411 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 52785; Mature: 52785

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
6.4 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
6.4 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMAKVELTTRRRNFIVAVMLISAFVAILNQTLLNTALPSIMRELNINESTSQWLVTGFML
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
VNGVMIPLTAYLMDRIKTRPLYLAAMGTFLLGSIVAALAPNFGVLMLARVIQAMGAGVLM
HCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHH
PLMQFTLFTLFSKEHRGFAMGLAGLVIQFAPAIGPTVTGLIIDQASWRVPFIIIVGIALV
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHEEEEECCCCCCHHHHHHHHHHH
AFVFGLVSISSYNEVKYTKLDKRSVMYSTIGFGLMLYAFSSAGDLGFTSPIVIGALIISM
HHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
VIIYLFIRRQFNITNVLLNLRVFKNRTFALCTISSMIIMMSMVGPALLIPLYVQNSLSLS
HHHHHHHHHCCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
ALLSGLVIMPGAIINGIMSVFTGKFYDKYGPRPLIYTGFTILTITTIMLCFLHTDTSYTY
HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHCCCCHHH
LIVVYAIRMFSVSLLMMPINTTGINSLRNEEISHGTAIMNFGRVMAGSLGTALMVTLMSF
HHHHHHHHHHHHHHHEEECCCCCCCHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
GAKIFLSTSPSHLTATEIKQQSIAIGVDISFAFVAVLVMAAYVIALFIREPKEIESNRRK
CCEEEEECCCCCCHHHHHHHHHEEEEECHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCC
F
C
>Mature Secondary Structure
MMAKVELTTRRRNFIVAVMLISAFVAILNQTLLNTALPSIMRELNINESTSQWLVTGFML
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
VNGVMIPLTAYLMDRIKTRPLYLAAMGTFLLGSIVAALAPNFGVLMLARVIQAMGAGVLM
HCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHH
PLMQFTLFTLFSKEHRGFAMGLAGLVIQFAPAIGPTVTGLIIDQASWRVPFIIIVGIALV
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHEEEEECCCCCCHHHHHHHHHHH
AFVFGLVSISSYNEVKYTKLDKRSVMYSTIGFGLMLYAFSSAGDLGFTSPIVIGALIISM
HHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
VIIYLFIRRQFNITNVLLNLRVFKNRTFALCTISSMIIMMSMVGPALLIPLYVQNSLSLS
HHHHHHHHHCCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
ALLSGLVIMPGAIINGIMSVFTGKFYDKYGPRPLIYTGFTILTITTIMLCFLHTDTSYTY
HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHCCCCHHH
LIVVYAIRMFSVSLLMMPINTTGINSLRNEEISHGTAIMNFGRVMAGSLGTALMVTLMSF
HHHHHHHHHHHHHHHEEECCCCCCCHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
GAKIFLSTSPSHLTATEIKQQSIAIGVDISFAFVAVLVMAAYVIALFIREPKEIESNRRK
CCEEEEECCCCCCHHHHHHHHHEEEEECHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCC
F
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; multidrug [Cytoplasm] [C]

Specific reaction: Proton [Periplasm] + multidrug [Cytoplasm] = Proton [Cytoplasm] + multidrug [Periplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]