Click here to switch to the map view.

The map label for this gene is tnpA1

Identifier: 148268140

GI number: 148268140

Start: 1814683

End: 1815768

Strand: Reverse

Name: tnpA1

Synonym: SaurJH9_1717

Alternate gene names: 148268140

Gene position: 1815768-1814683 (Counterclockwise)

Preceding gene: 148268141

Following gene: 148268139

Centisome position: 62.47

GC content: 32.14

Gene sequence:

>1086_bases
GTGAAGGTTCAAAGGATAGAAGTGGAGAATAAGCCGTATCCATTGTATTTATTACTAGATAAAGAATACCAGCTAATAGA
ACCAGTAATGAAATTTATTAAATACTTAGATAATACTGGTAAGTCTCCTAATACCATTAAGGCATACTGCTATCATTTAA
AGTTGCTGTACGAGTTCATGGAACAGAGAGGTGTTATTCTTAATGATATTAACTTTGAGTTGTTAGCAGACTTCGTAGGT
TGGTTGAGATATCCTTCAGCATCAAATGTAATTGATCTTCAGTCAAAAAAAGCCATAAGAGAAGAAACGACAGTGAATAC
AATTTTAAATGTAGTTATGAGTTTTCTTGATTATTTAAGTAGATTAGGAGAATTTAAATCAATTGATGTATTTAAACAAG
CAAAGGGAAGAAATTTCAAAGGATTTTTACATCATGTTAATAAGGGTAGATACCAAAAGAATGTCTTAAAGTTAAGGGTT
AAAAAGAAACAGATAAGAACATTGAGATCAAAGGAAGTTAAGCAAATTATTGATGCTTGTCATACGAAAAGAGATAAATT
AATTTTAATGCTTATGTATGAGGGTGGTTTAAGAATCGGTGAAGTGTTATCGCTTAGGCTTGAAGATATTGTCACTTGGG
ACAATCAAATCCATTTAACACCTAGAGATGTTAATGTTAATGAAGCTTATATTAAATTAAGGAAGGAAAGAACAATACAT
GTGAGTAAAGAACTTATGTCACTTTATACAGATTACTTGATATATGAGTATAGTGAGGAATTGGAGCATGATTATGTTTT
TATTTCCTTAAAAGAAGGCTATTTTGGGAAACCACTAAAGTACCAAAGTGTTCTTGATCTAGTTAGAAGAATAGTTAAAA
GGACTGGAATAGAATTTACATCACATATGCTTCGCCACACTCACGCAACGCAGCTAATTAGGGAAGGATGGGATGTTGCG
TTCGTTCAAAAGAGATTAGGTCACGCACATGTTCAGACAACGTTAAATACCTATGTTCATCTTTCAGATCAGGATATGAA
AAATGAGTTTAATAAATACCTCGAGAGAAAGGAGCATAAGAAATGA

Upstream 100 bases:

>100_bases
GTAGTTTAAGAGGAGATATTAAAGGGATATTTTACTTTAAATAAAAATTAACAAGGTTTATAATTTGTAGTAGTTAAAGT
ATTTAAAGAGGTGGGAACAT

Downstream 100 bases:

>100_bases
ATGCTTCTAGTAAAAGGAAAATTATTAGTCAGAGTGAGATTAGCAAAAAAATAGCTGTAATGAATGAAGAAATGCAGGGG
TTTTGGGCTAATAATAGTTG

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MKVQRIEVENKPYPLYLLLDKEYQLIEPVMKFIKYLDNTGKSPNTIKAYCYHLKLLYEFMEQRGVILNDINFELLADFVG
WLRYPSASNVIDLQSKKAIREETTVNTILNVVMSFLDYLSRLGEFKSIDVFKQAKGRNFKGFLHHVNKGRYQKNVLKLRV
KKKQIRTLRSKEVKQIIDACHTKRDKLILMLMYEGGLRIGEVLSLRLEDIVTWDNQIHLTPRDVNVNEAYIKLRKERTIH
VSKELMSLYTDYLIYEYSEELEHDYVFISLKEGYFGKPLKYQSVLDLVRRIVKRTGIEFTSHMLRHTHATQLIREGWDVA
FVQKRLGHAHVQTTLNTYVHLSDQDMKNEFNKYLERKEHKK

Sequences:

>Translated_361_residues
MKVQRIEVENKPYPLYLLLDKEYQLIEPVMKFIKYLDNTGKSPNTIKAYCYHLKLLYEFMEQRGVILNDINFELLADFVG
WLRYPSASNVIDLQSKKAIREETTVNTILNVVMSFLDYLSRLGEFKSIDVFKQAKGRNFKGFLHHVNKGRYQKNVLKLRV
KKKQIRTLRSKEVKQIIDACHTKRDKLILMLMYEGGLRIGEVLSLRLEDIVTWDNQIHLTPRDVNVNEAYIKLRKERTIH
VSKELMSLYTDYLIYEYSEELEHDYVFISLKEGYFGKPLKYQSVLDLVRRIVKRTGIEFTSHMLRHTHATQLIREGWDVA
FVQKRLGHAHVQTTLNTYVHLSDQDMKNEFNKYLERKEHKK
>Mature_361_residues
MKVQRIEVENKPYPLYLLLDKEYQLIEPVMKFIKYLDNTGKSPNTIKAYCYHLKLLYEFMEQRGVILNDINFELLADFVG
WLRYPSASNVIDLQSKKAIREETTVNTILNVVMSFLDYLSRLGEFKSIDVFKQAKGRNFKGFLHHVNKGRYQKNVLKLRV
KKKQIRTLRSKEVKQIIDACHTKRDKLILMLMYEGGLRIGEVLSLRLEDIVTWDNQIHLTPRDVNVNEAYIKLRKERTIH
VSKELMSLYTDYLIYEYSEELEHDYVFISLKEGYFGKPLKYQSVLDLVRRIVKRTGIEFTSHMLRHTHATQLIREGWDVA
FVQKRLGHAHVQTTLNTYVHLSDQDMKNEFNKYLERKEHKK

Specific function: One of three proteins encoded by transposon Tn554 required for its transposition

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TNPA_STAAM (P0A050)

Other databases:

- EMBL:   BA000017
- EMBL:   BA000017
- RefSeq:   NP_370580.1
- RefSeq:   NP_372183.1
- ProteinModelPortal:   P0A050
- STRING:   P0A050
- EnsemblBacteria:   EBSTAT00000005729
- EnsemblBacteria:   EBSTAT00000006955
- GeneID:   1120016
- GeneID:   1121634
- GenomeReviews:   BA000017_GR
- GenomeReviews:   BA000017_GR
- KEGG:   sav:SAV0056
- KEGG:   sav:SAV1659
- eggNOG:   COG0582
- GeneTree:   EBGT00050000024184
- HOGENOM:   HBG565748
- OMA:   NFKGFLY
- ProtClustDB:   CLSK884358
- BioCyc:   SAUR158878:SAV0056-MONOMER
- BioCyc:   SAUR158878:SAV1659-MONOMER
- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107
- Gene3D:   G3DSA:1.10.150.130
- Gene3D:   G3DSA:1.10.443.10

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase; SSF56349 DNA_brk_join_enz

EC number: NA

Molecular weight: Translated: 42942; Mature: 42942

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: ACT_SITE 338-338

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVQRIEVENKPYPLYLLLDKEYQLIEPVMKFIKYLDNTGKSPNTIKAYCYHLKLLYEFM
CCCEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
EQRGVILNDINFELLADFVGWLRYPSASNVIDLQSKKAIREETTVNTILNVVMSFLDYLS
HHCCCEEECCCHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLGEFKSIDVFKQAKGRNFKGFLHHVNKGRYQKNVLKLRVKKKQIRTLRSKEVKQIIDAC
HHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HTKRDKLILMLMYEGGLRIGEVLSLRLEDIVTWDNQIHLTPRDVNVNEAYIKLRKERTIH
CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHH
VSKELMSLYTDYLIYEYSEELEHDYVFISLKEGYFGKPLKYQSVLDLVRRIVKRTGIEFT
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCHHHH
SHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTTLNTYVHLSDQDMKNEFNKYLERKEHK
HHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHCC
K
C
>Mature Secondary Structure
MKVQRIEVENKPYPLYLLLDKEYQLIEPVMKFIKYLDNTGKSPNTIKAYCYHLKLLYEFM
CCCEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
EQRGVILNDINFELLADFVGWLRYPSASNVIDLQSKKAIREETTVNTILNVVMSFLDYLS
HHCCCEEECCCHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLGEFKSIDVFKQAKGRNFKGFLHHVNKGRYQKNVLKLRVKKKQIRTLRSKEVKQIIDAC
HHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HTKRDKLILMLMYEGGLRIGEVLSLRLEDIVTWDNQIHLTPRDVNVNEAYIKLRKERTIH
CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHH
VSKELMSLYTDYLIYEYSEELEHDYVFISLKEGYFGKPLKYQSVLDLVRRIVKRTGIEFT
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCHHHH
SHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTTLNTYVHLSDQDMKNEFNKYLERKEHK
HHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11418146