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The map label for this gene is rimM

Identifier: 148267730

GI number: 148267730

Start: 1349149

End: 1349652

Strand: Direct

Name: rimM

Synonym: SaurJH9_1298

Alternate gene names: 148267730

Gene position: 1349149-1349652 (Clockwise)

Preceding gene: 148267729

Following gene: 148267731

Centisome position: 46.42

GC content: 31.75

Gene sequence:

>504_bases
ATGAGAGTTGAAGTTGGTCAAATTGTTAACACACATGGTATTAAAGGTGAAATTAAAGTAAAATCCAATTCAGACTTTAC
AGACGTTCGTTTTCAACCCGGTCAAGTGCTGACAGTTGTGCATAACAATAACGACCTTGAATATACTGTTAAGTCACATA
GAGTGCATAAAGGGCTTCATATGCTTACATTTGAAGGTATTAATAATATTAATGATATTGAGCATTTAAAAGGGAGTTCT
ATTTATCAAGAGCGTGATCATGAAGATATCGTACTTGAGGAAAATGAATTTTATTATTCAGATATTATAGGATGTACAGT
TTTTGATGATCAAGAAACACCAATAGGTCGTGTAATTAATATATTTGAAACAGGTGCGAATGATGTGTGGGTGATTAAAG
GATCTAAAGAATATTTGATTCCTTATATTGCTGATGTTGTAAAAGAAGTGGATGTTGAAAATAAAAAAATTATCATCACG
CCAATGGAAGGATTGTTGGATTAA

Upstream 100 bases:

>100_bases
GTAATATAGAACGTATTGGGTACCATAATGGTGCCCTTTTTCTTTGAATTATTTTCAATTAAAATAGAAGTGTTCAAAGC
ATAGAGTTGGAGGTAATAGA

Downstream 100 bases:

>100_bases
TGAAAATTGATTATTTAACTTTATTTCCTGAAATGTTTGATGGTGTTTTAAATCATTCAATTATGAAACGTGCCCAAGAA
AACAATAAATTACAAATCAA

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MRVEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHMLTFEGINNINDIEHLKGSS
IYQERDHEDIVLEENEFYYSDIIGCTVFDDQETPIGRVINIFETGANDVWVIKGSKEYLIPYIADVVKEVDVENKKIIIT
PMEGLLD

Sequences:

>Translated_167_residues
MRVEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHMLTFEGINNINDIEHLKGSS
IYQERDHEDIVLEENEFYYSDIIGCTVFDDQETPIGRVINIFETGANDVWVIKGSKEYLIPYIADVVKEVDVENKKIIIT
PMEGLLD
>Mature_167_residues
MRVEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHMLTFEGINNINDIEHLKGSS
IYQERDHEDIVLEENEFYYSDIIGCTVFDDQETPIGRVINIFETGANDVWVIKGSKEYLIPYIADVVKEVDVENKKIIIT
PMEGLLD

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=161, Percent_Identity=26.0869565217391, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_STAA1 (A7X1K9)

Other databases:

- EMBL:   AP009324
- RefSeq:   YP_001441819.1
- ProteinModelPortal:   A7X1K9
- SMR:   A7X1K9
- STRING:   A7X1K9
- EnsemblBacteria:   EBSTAT00000004009
- GeneID:   5559749
- GenomeReviews:   AP009324_GR
- KEGG:   saw:SAHV_1229
- eggNOG:   COG0806
- GeneTree:   EBGT00050000025391
- HOGENOM:   HBG703775
- OMA:   PDEFYDH
- ProtClustDB:   PRK00122
- BioCyc:   SAUR418127:SAHV_1229-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19073; Mature: 19073

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLH
CEEECCCEEECCCCCEEEEECCCCCCEEEEECCCCEEEEEECCCCEEEEEECCHHHCCEE
MLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGCTVFDDQETPIGRVIN
EEEECCCCCCCHHHHCCCCCCCCCCCCCCEEEECCCEEEEEEEEEEEECCCCCCHHHEEE
IFETGANDVWVIKGSKEYLIPYIADVVKEVDVENKKIIITPMEGLLD
EEECCCCEEEEEECCCCEEHHHHHHHHHHCCCCCCEEEEECCHHHCC
>Mature Secondary Structure
MRVEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLH
CEEECCCEEECCCCCEEEEECCCCCCEEEEECCCCEEEEEECCCCEEEEEECCHHHCCEE
MLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGCTVFDDQETPIGRVIN
EEEECCCCCCCHHHHCCCCCCCCCCCCCCEEEECCCEEEEEEEEEEEECCCCCCHHHEEE
IFETGANDVWVIKGSKEYLIPYIADVVKEVDVENKKIIITPMEGLLD
EEECCCCEEEEEECCCCEEHHHHHHHHHHCCCCCCEEEEECCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA