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The map label for this gene is ybbH [H]

Identifier: 148266618

GI number: 148266618

Start: 214647

End: 215522

Strand: Direct

Name: ybbH [H]

Synonym: SaurJH9_0178

Alternate gene names: 148266618

Gene position: 214647-215522 (Clockwise)

Preceding gene: 148266617

Following gene: 148266620

Centisome position: 7.38

GC content: 34.36

Gene sequence:

>876_bases
ATGACAAATATTTTATATCGCATTGATAAACAGTTGAGTGATTTTACGAAGACAGAAAAGATAATCGCTGATTACATTTT
AAAGAATCCACATAAAATCATTGATATGACGGTGAATGATTTGGCAGATGTTACGAATGTTAGTACAGCATCAATTGTTA
GATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCA
ACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATGATTGCTAGAGCAACGAATAC
GATGCGATTTGTAGCTACTAATATTATGGATGCGCAAATTGATGCAATTTGTGATGTGTTGAAAAATGCCAGGACAATAT
TTTTATTTGGATTTGGCGCATCGAGTTTGACTATTGGTGATCTTTTTCAAAAGTTATCTCGTATTGGCTTAAATGTCAGG
TTATTACATGAAACGCATTTACTTGTGTCAACATTTGCGACGCATGATGATAGAGATTGCATGATTTTTGTGACGAATCA
AGGTAGTCATAGTGAATTGCAGTCAATTGCACAGGTGGCCACACATTACAGTATTCCCATCATAACTATATCTAGTACAG
CTAATAATCCAGTGGCTCAAATTGCAGACTATGCATTGATTTATGGCAGAACTGATGAAAATGAAATGCGTATGGCGGCT
ACAACTTCACTATTTGCACAGTTATTCACGGTAGATATATTGTACTATCGATTTGTAGCATTAAATTATCATGCGATTCT
AGATTGTATAACCCAATCGAAAATGGCACTTGATAATTACCGGAAGCATCTTGCGACGATAGATTTTAAACATTAG

Upstream 100 bases:

>100_bases
TTGCAGGATTACTTGCTGCATATGCTGGTGGATTCGTTTGTACATATTTATTTGGAACGACAAAGGCGATGCGACAGACA
GATTTGTTGGGTGATTAATG

Downstream 100 bases:

>100_bases
ATATTGTGAGCGTTCTAATATAAAGTTAGTTGCAACGTAAACAATTGAAGTTTGTGATGTGATTCAGTTGTTTGATGAAA
AATTGTTGCTACAAGTTTGT

Product: RpiR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 290

Protein sequence:

>291_residues
MTNILYRIDKQLSDFTKTEKIIADYILKNPHKIIDMTVNDLADVTNVSTASIVRFSRKMTHQGFQELKIAISRYLPEDIA
TNPHLELIENESVETLKNKMIARATNTMRFVATNIMDAQIDAICDVLKNARTIFLFGFGASSLTIGDLFQKLSRIGLNVR
LLHETHLLVSTFATHDDRDCMIFVTNQGSHSELQSIAQVATHYSIPIITISSTANNPVAQIADYALIYGRTDENEMRMAA
TTSLFAQLFTVDILYYRFVALNYHAILDCITQSKMALDNYRKHLATIDFKH

Sequences:

>Translated_291_residues
MTNILYRIDKQLSDFTKTEKIIADYILKNPHKIIDMTVNDLADVTNVSTASIVRFSRKMTHQGFQELKIAISRYLPEDIA
TNPHLELIENESVETLKNKMIARATNTMRFVATNIMDAQIDAICDVLKNARTIFLFGFGASSLTIGDLFQKLSRIGLNVR
LLHETHLLVSTFATHDDRDCMIFVTNQGSHSELQSIAQVATHYSIPIITISSTANNPVAQIADYALIYGRTDENEMRMAA
TTSLFAQLFTVDILYYRFVALNYHAILDCITQSKMALDNYRKHLATIDFKH
>Mature_290_residues
TNILYRIDKQLSDFTKTEKIIADYILKNPHKIIDMTVNDLADVTNVSTASIVRFSRKMTHQGFQELKIAISRYLPEDIAT
NPHLELIENESVETLKNKMIARATNTMRFVATNIMDAQIDAICDVLKNARTIFLFGFGASSLTIGDLFQKLSRIGLNVRL
LHETHLLVSTFATHDDRDCMIFVTNQGSHSELQSIAQVATHYSIPIITISSTANNPVAQIADYALIYGRTDENEMRMAAT
TSLFAQLFTVDILYYRFVALNYHAILDCITQSKMALDNYRKHLATIDFKH

Specific function: Unknown

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI87082130, Length=261, Percent_Identity=26.0536398467433, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1788767, Length=271, Percent_Identity=28.7822878228782, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI1788159, Length=283, Percent_Identity=26.1484098939929, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI87082369, Length=281, Percent_Identity=24.9110320284698, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 32987; Mature: 32856

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNILYRIDKQLSDFTKTEKIIADYILKNPHKIIDMTVNDLADVTNVSTASIVRFSRKMT
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHCCCCHHHHHHHHHHHH
HQGFQELKIAISRYLPEDIATNPHLELIENESVETLKNKMIARATNTMRFVATNIMDAQI
HCCHHHHHHHHHHHCCHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DAICDVLKNARTIFLFGFGASSLTIGDLFQKLSRIGLNVRLLHETHLLVSTFATHDDRDC
HHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCCCCCE
MIFVTNQGSHSELQSIAQVATHYSIPIITISSTANNPVAQIADYALIYGRTDENEMRMAA
EEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCEEECCCCCCHHHHHH
TTSLFAQLFTVDILYYRFVALNYHAILDCITQSKMALDNYRKHLATIDFKH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TNILYRIDKQLSDFTKTEKIIADYILKNPHKIIDMTVNDLADVTNVSTASIVRFSRKMT
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHCCCCHHHHHHHHHHHH
HQGFQELKIAISRYLPEDIATNPHLELIENESVETLKNKMIARATNTMRFVATNIMDAQI
HCCHHHHHHHHHHHCCHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DAICDVLKNARTIFLFGFGASSLTIGDLFQKLSRIGLNVRLLHETHLLVSTFATHDDRDC
HHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCCCCCE
MIFVTNQGSHSELQSIAQVATHYSIPIITISSTANNPVAQIADYALIYGRTDENEMRMAA
EEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCEEECCCCCCHHHHHH
TTSLFAQLFTVDILYYRFVALNYHAILDCITQSKMALDNYRKHLATIDFKH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377 [H]