| Definition | Staphylococcus aureus subsp. aureus JH9, complete genome. |
|---|---|
| Accession | NC_009487 |
| Length | 2,906,700 |
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The map label for this gene is hsdR [H]
Identifier: 148266620
GI number: 148266620
Start: 216210
End: 218999
Strand: Direct
Name: hsdR [H]
Synonym: SaurJH9_0180
Alternate gene names: 148266620
Gene position: 216210-218999 (Clockwise)
Preceding gene: 148266618
Following gene: 148266622
Centisome position: 7.44
GC content: 33.15
Gene sequence:
>2790_bases ATGGCATACCAAAGTGAATACGCATTAGAAAATGAAATGATGAATCAACTTGAACAATTGGGTTACGAAAGAGTAACGAT ACGTGATAATAAGCAATTGCTTGATAATTTTAGAACGATTTTAAATGAGCGTCATGCGGACAAATTAGAAGGCAATCCCT TAACAGATAAAGAATTTCAACGTCTGTTAACGATGATTGATGGGAAAAGTATTTTCGAGAGTGCCCGTATTTTACGTGAT AAATTACCACTTAGACGTGATGATGAGTCTGAGATTTATTTGTCGTTTTTAGATAAGAAAAGTTGGTGTAAAAATAAGTT TCAAGTGACGAATCAAGTATCTGTCGAGGATACATATAAAGCACGTTATGATGTAACGATATTAATCAACGGACTACCCC TTGTCCAAGTTGAATTGAAACGTCGAGGTATTGATATTAATGAGGCGTTTAACCAAGTAAAACGTTACCGCAAACAAAAT TACACAGGCTTATTCCGCTACATACAAATGTTTATCATTAGTAATGGTGTTGAAACGCGATACTTTTCTAATAATGATAG CGAACTATTGAAGAGTCACATGTTTTATTGGAGTGATAAACAGAATAACCGAATCAATACATTACAATCATTTGCTGAGT CGTTTATGAGACCCTGTCAATTAGCTAAGATGATATCGCGCTATATGATTATTAATGAAACAGATAGAATACTGATGGCA ATGCGTCCGTATCAAGTGTATGCGGTAGAAGCACTTATTCAACAAGCGACTGAGACAGGGAATAATGGATATGTATGGCA TACAACTGGAAGTGGTAAGACATTGACTTCTTTTAAAGCGAGTCAGATTTTATCACAGCAAGATGACATTAAGAAAGTTA TCTTTTTGGTTGACCGTAAAGACTTGGATAGTCAAACAGAAGAGGAATTTAATAAATTTGCTAAGGGTGCTGTAGACAAA ACTTTTAATACCTCGCAACTGGTACGCCAACTAAATGATAAAAGTTTGCCACTTATTGTAACGACGATTCAAAAAATGGC TAAAGCGATTCAAGGGAATGCCCATTTATTAGAACAGTATAAAACGAATAAAGTTGTATTTATTATTGATGAGTGTCATC GCAGTCAATTTGGTGACATGCATCGTCTAGTTAAACAACATTTCAAAAATGCCCAATACTTTGGATTCACTGGTACGCCA CGTTTTCCAGAAAATAGTAGTCAAGATGGTAGAACAACTGCAGATATTTTCGGTAGATGCTTACATACGTATTTAATTAG AGATGCCATTCATGATGGTAATGTACTTGGTTTCTCAGTTGACTATATTAATACTTTTAAAAATAAAGCTTTAAAAGCAG AAGATAACAGCATGGTTGAAGCAATTGATACGGAAGAAGTATGGTTAGCGGATAAACGTGTGGAATTAGTAACACGACAT ATCATCAATAATCATGATAAATATACACGTAATCGTCAATATTCAAGTATATTTACAGTCCAAAGTATTCACGCGCTTAT TAAATATTATGAGACATTTAAGCGACTTAACAAAAAGTTGGAACAACCGTTAACGATAGCTGGTATATTTACGTTTAAAC CTAATGAAGATGATCGTGATGGTGAAGTGCCATATCATTCACGTGAAAAATTAGAGATAATGATTAGTGATTATAATAAA AAGTTCGAGACGAATTTTTCAACAGACACAACTAATGAGTATTTTAATCATATTTCAAAAAACGTTAAAAAGGGCGTTAA AGATAGTAAAATTGATATCTTAATCGTTGTTAATATGTTCTTAACTGGTTTTGATAGTAAAGTACTGAACACTTTATATG TTGATAAGAATTTAATGTATCATGATTTAATTCAAGCGTATTCACGTACAAATAGGGTTGAAAAAGAATCAAAGCCATTT GGTAAAATTGTAAACTATCGTGACTTGAAAAAAGAGACAGACGATGCACTGAGAGTATTCTCACAAACAAATGATACGGA TACAATTTTAATGCGCAGTTATGAAGAGTATAAAAAAGAATTTATGGACGCTTATCGTGAGCTTAAAATGATTGTGCCGA CACCACACATGGTTGATGACATTCAAGATGAAGAAGAGCTAAAGCGCTTTGTTGAAGCTTATCGTTTATTAGCTAAAATA ATATTACGTTTAAAAGCATTTGACGAGTTTGAGTTTACAATTGATGAAATTGGAATGGATGAACAAGAGAATGAAGACTA TAAAAGTAAATATTTAGCTGTGTACGATCAAGTAAAAAGAGCGACGGCTGAGAAAAATAAAGTATCCATTTTAAATGATA TTGATTTCGAAATAGAAATGATGCGTAATGATACGATTAATGTGAATTATATTATGAATATATTGAGACAAATTGATCTT GAAGACAAAGCGGAACAACGTCGTAACCAAGAACAAATTAGACGCATTTTAGATCATGCAGATGATCCGACATTGAGGTT AAAACGAGATCTAATTAGAGAATTCATCGACAATGTTGTACCTTCTTTAAATAAGGATGATGATATCGATCAAGAATATG TTAATTTCGAAAGTATTAAAAAAGAAGCGGAGTTCAAAGGATTTGCTGGAGAGAGATCTATCGATGAACAAGCCCTAAAA ACAATTTCAAATGACTACCAGTATAGTGGTGTTGTAAACCCACATCACCTTAAAAAAATGATTGGTGATTTGCCATTGAA AGAAAAGCGTAAAGCAAGAAAAGCCATTGAATCTTTCGTGGCAGAAACAACTGAAAAATACGGTGTGTAA
Upstream 100 bases:
>100_bases AAATTAGAATAAATTTACGTTTGAAGATAAAAAACAAACATTTTTCATTAAAGTTTATGATATATTTAGAGCAATAGAAA GTGTATGGAAGGGGATATGA
Downstream 100 bases:
>100_bases TGATTCAGCCCCCTCGCTAGATTAGTGTAGGGGGCATTATTATTTCATTAGAAAAGGCTCATTTGTTAAATTCATCTTAT CAAGAATATAACGAATGTTC
Product: HsdR family type I site-specific deoxyribonuclease
Products: NA
Alternate protein names: Type I restriction enzyme R protein [H]
Number of amino acids: Translated: 929; Mature: 928
Protein sequence:
>929_residues MAYQSEYALENEMMNQLEQLGYERVTIRDNKQLLDNFRTILNERHADKLEGNPLTDKEFQRLLTMIDGKSIFESARILRD KLPLRRDDESEIYLSFLDKKSWCKNKFQVTNQVSVEDTYKARYDVTILINGLPLVQVELKRRGIDINEAFNQVKRYRKQN YTGLFRYIQMFIISNGVETRYFSNNDSELLKSHMFYWSDKQNNRINTLQSFAESFMRPCQLAKMISRYMIINETDRILMA MRPYQVYAVEALIQQATETGNNGYVWHTTGSGKTLTSFKASQILSQQDDIKKVIFLVDRKDLDSQTEEEFNKFAKGAVDK TFNTSQLVRQLNDKSLPLIVTTIQKMAKAIQGNAHLLEQYKTNKVVFIIDECHRSQFGDMHRLVKQHFKNAQYFGFTGTP RFPENSSQDGRTTADIFGRCLHTYLIRDAIHDGNVLGFSVDYINTFKNKALKAEDNSMVEAIDTEEVWLADKRVELVTRH IINNHDKYTRNRQYSSIFTVQSIHALIKYYETFKRLNKKLEQPLTIAGIFTFKPNEDDRDGEVPYHSREKLEIMISDYNK KFETNFSTDTTNEYFNHISKNVKKGVKDSKIDILIVVNMFLTGFDSKVLNTLYVDKNLMYHDLIQAYSRTNRVEKESKPF GKIVNYRDLKKETDDALRVFSQTNDTDTILMRSYEEYKKEFMDAYRELKMIVPTPHMVDDIQDEEELKRFVEAYRLLAKI ILRLKAFDEFEFTIDEIGMDEQENEDYKSKYLAVYDQVKRATAEKNKVSILNDIDFEIEMMRNDTINVNYIMNILRQIDL EDKAEQRRNQEQIRRILDHADDPTLRLKRDLIREFIDNVVPSLNKDDDIDQEYVNFESIKKEAEFKGFAGERSIDEQALK TISNDYQYSGVVNPHHLKKMIGDLPLKEKRKARKAIESFVAETTEKYGV
Sequences:
>Translated_929_residues MAYQSEYALENEMMNQLEQLGYERVTIRDNKQLLDNFRTILNERHADKLEGNPLTDKEFQRLLTMIDGKSIFESARILRD KLPLRRDDESEIYLSFLDKKSWCKNKFQVTNQVSVEDTYKARYDVTILINGLPLVQVELKRRGIDINEAFNQVKRYRKQN YTGLFRYIQMFIISNGVETRYFSNNDSELLKSHMFYWSDKQNNRINTLQSFAESFMRPCQLAKMISRYMIINETDRILMA MRPYQVYAVEALIQQATETGNNGYVWHTTGSGKTLTSFKASQILSQQDDIKKVIFLVDRKDLDSQTEEEFNKFAKGAVDK TFNTSQLVRQLNDKSLPLIVTTIQKMAKAIQGNAHLLEQYKTNKVVFIIDECHRSQFGDMHRLVKQHFKNAQYFGFTGTP RFPENSSQDGRTTADIFGRCLHTYLIRDAIHDGNVLGFSVDYINTFKNKALKAEDNSMVEAIDTEEVWLADKRVELVTRH IINNHDKYTRNRQYSSIFTVQSIHALIKYYETFKRLNKKLEQPLTIAGIFTFKPNEDDRDGEVPYHSREKLEIMISDYNK KFETNFSTDTTNEYFNHISKNVKKGVKDSKIDILIVVNMFLTGFDSKVLNTLYVDKNLMYHDLIQAYSRTNRVEKESKPF GKIVNYRDLKKETDDALRVFSQTNDTDTILMRSYEEYKKEFMDAYRELKMIVPTPHMVDDIQDEEELKRFVEAYRLLAKI ILRLKAFDEFEFTIDEIGMDEQENEDYKSKYLAVYDQVKRATAEKNKVSILNDIDFEIEMMRNDTINVNYIMNILRQIDL EDKAEQRRNQEQIRRILDHADDPTLRLKRDLIREFIDNVVPSLNKDDDIDQEYVNFESIKKEAEFKGFAGERSIDEQALK TISNDYQYSGVVNPHHLKKMIGDLPLKEKRKARKAIESFVAETTEKYGV >Mature_928_residues AYQSEYALENEMMNQLEQLGYERVTIRDNKQLLDNFRTILNERHADKLEGNPLTDKEFQRLLTMIDGKSIFESARILRDK LPLRRDDESEIYLSFLDKKSWCKNKFQVTNQVSVEDTYKARYDVTILINGLPLVQVELKRRGIDINEAFNQVKRYRKQNY TGLFRYIQMFIISNGVETRYFSNNDSELLKSHMFYWSDKQNNRINTLQSFAESFMRPCQLAKMISRYMIINETDRILMAM RPYQVYAVEALIQQATETGNNGYVWHTTGSGKTLTSFKASQILSQQDDIKKVIFLVDRKDLDSQTEEEFNKFAKGAVDKT FNTSQLVRQLNDKSLPLIVTTIQKMAKAIQGNAHLLEQYKTNKVVFIIDECHRSQFGDMHRLVKQHFKNAQYFGFTGTPR FPENSSQDGRTTADIFGRCLHTYLIRDAIHDGNVLGFSVDYINTFKNKALKAEDNSMVEAIDTEEVWLADKRVELVTRHI INNHDKYTRNRQYSSIFTVQSIHALIKYYETFKRLNKKLEQPLTIAGIFTFKPNEDDRDGEVPYHSREKLEIMISDYNKK FETNFSTDTTNEYFNHISKNVKKGVKDSKIDILIVVNMFLTGFDSKVLNTLYVDKNLMYHDLIQAYSRTNRVEKESKPFG KIVNYRDLKKETDDALRVFSQTNDTDTILMRSYEEYKKEFMDAYRELKMIVPTPHMVDDIQDEEELKRFVEAYRLLAKII LRLKAFDEFEFTIDEIGMDEQENEDYKSKYLAVYDQVKRATAEKNKVSILNDIDFEIEMMRNDTINVNYIMNILRQIDLE DKAEQRRNQEQIRRILDHADDPTLRLKRDLIREFIDNVVPSLNKDDDIDQEYVNFESIKKEAEFKGFAGERSIDEQALKT ISNDYQYSGVVNPHHLKKMIGDLPLKEKRKARKAIESFVAETTEKYGV
Specific function: Subunit R is required for both nuclease and ATPase activities, but not for modification [H]
COG id: COG0610
COG function: function code V; Type I site-specific restriction-modification system, R (restriction) subunit and related helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase ATP-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR014021 - InterPro: IPR004473 - InterPro: IPR006935 - InterPro: IPR007409 - InterPro: IPR022625 [H]
Pfam domain/function: PF12008 EcoR124_C; PF04313 HSDR_N; PF04851 ResIII [H]
EC number: =3.1.21.3 [H]
Molecular weight: Translated: 109295; Mature: 109164
Theoretical pI: Translated: 6.66; Mature: 6.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYQSEYALENEMMNQLEQLGYERVTIRDNKQLLDNFRTILNERHADKLEGNPLTDKEFQ CCCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCHHCCCCCCCHHHHH RLLTMIDGKSIFESARILRDKLPLRRDDESEIYLSFLDKKSWCKNKFQVTNQVSVEDTYK HHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHHHHCCCEECCCHHHC ARYDVTILINGLPLVQVELKRRGIDINEAFNQVKRYRKQNYTGLFRYIQMFIISNGVETR CEEEEEEEECCCCEEEEHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEE YFSNNDSELLKSHMFYWSDKQNNRINTLQSFAESFMRPCQLAKMISRYMIINETDRILMA EECCCHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE MRPYQVYAVEALIQQATETGNNGYVWHTTGSGKTLTSFKASQILSQQDDIKKVIFLVDRK ECCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCC DLDSQTEEEFNKFAKGAVDKTFNTSQLVRQLNDKSLPLIVTTIQKMAKAIQGNAHLLEQY CCCCHHHHHHHHHHHCHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHH KTNKVVFIIDECHRSQFGDMHRLVKQHFKNAQYFGFTGTPRFPENSSQDGRTTADIFGRC CCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHH LHTYLIRDAIHDGNVLGFSVDYINTFKNKALKAEDNSMVEAIDTEEVWLADKRVELVTRH HHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHH IINNHDKYTRNRQYSSIFTVQSIHALIKYYETFKRLNKKLEQPLTIAGIFTFKPNEDDRD HHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCC GEVPYHSREKLEIMISDYNKKFETNFSTDTTNEYFNHISKNVKKGVKDSKIDILIVVNMF CCCCCCCCCCEEEEEECCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEHHHH LTGFDSKVLNTLYVDKNLMYHDLIQAYSRTNRVEKESKPFGKIVNYRDLKKETDDALRVF HHCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHCCCHHHHCCHHHHHHHHHHHHHHH SQTNDTDTILMRSYEEYKKEFMDAYRELKMIVPTPHMVDDIQDEEELKRFVEAYRLLAKI HCCCCCHHHHHHHHHHHHHHHHHHHHHCEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHH ILRLKAFDEFEFTIDEIGMDEQENEDYKSKYLAVYDQVKRATAEKNKVSILNDIDFEIEM HHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEE MRNDTINVNYIMNILRQIDLEDKAEQRRNQEQIRRILDHADDPTLRLKRDLIREFIDNVV ECCCCCCHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC PSLNKDDDIDQEYVNFESIKKEAEFKGFAGERSIDEQALKTISNDYQYSGVVNPHHLKKM CCCCCCCCCHHHHHCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHH IGDLPLKEKRKARKAIESFVAETTEKYGV HCCCCCHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AYQSEYALENEMMNQLEQLGYERVTIRDNKQLLDNFRTILNERHADKLEGNPLTDKEFQ CCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCHHCCCCCCCHHHHH RLLTMIDGKSIFESARILRDKLPLRRDDESEIYLSFLDKKSWCKNKFQVTNQVSVEDTYK HHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHHHHCCCEECCCHHHC ARYDVTILINGLPLVQVELKRRGIDINEAFNQVKRYRKQNYTGLFRYIQMFIISNGVETR CEEEEEEEECCCCEEEEHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEE YFSNNDSELLKSHMFYWSDKQNNRINTLQSFAESFMRPCQLAKMISRYMIINETDRILMA EECCCHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE MRPYQVYAVEALIQQATETGNNGYVWHTTGSGKTLTSFKASQILSQQDDIKKVIFLVDRK ECCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCC DLDSQTEEEFNKFAKGAVDKTFNTSQLVRQLNDKSLPLIVTTIQKMAKAIQGNAHLLEQY CCCCHHHHHHHHHHHCHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHH KTNKVVFIIDECHRSQFGDMHRLVKQHFKNAQYFGFTGTPRFPENSSQDGRTTADIFGRC CCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHH LHTYLIRDAIHDGNVLGFSVDYINTFKNKALKAEDNSMVEAIDTEEVWLADKRVELVTRH HHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHH IINNHDKYTRNRQYSSIFTVQSIHALIKYYETFKRLNKKLEQPLTIAGIFTFKPNEDDRD HHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCC GEVPYHSREKLEIMISDYNKKFETNFSTDTTNEYFNHISKNVKKGVKDSKIDILIVVNMF CCCCCCCCCCEEEEEECCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEHHHH LTGFDSKVLNTLYVDKNLMYHDLIQAYSRTNRVEKESKPFGKIVNYRDLKKETDDALRVF HHCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHCCCHHHHCCHHHHHHHHHHHHHHH SQTNDTDTILMRSYEEYKKEFMDAYRELKMIVPTPHMVDDIQDEEELKRFVEAYRLLAKI HCCCCCHHHHHHHHHHHHHHHHHHHHHCEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHH ILRLKAFDEFEFTIDEIGMDEQENEDYKSKYLAVYDQVKRATAEKNKVSILNDIDFEIEM HHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEE MRNDTINVNYIMNILRQIDLEDKAEQRRNQEQIRRILDHADDPTLRLKRDLIREFIDNVV ECCCCCCHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC PSLNKDDDIDQEYVNFESIKKEAEFKGFAGERSIDEQALKTISNDYQYSGVVNPHHLKKM CCCCCCCCCHHHHHCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHH IGDLPLKEKRKARKAIESFVAETTEKYGV HCCCCCHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA