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The map label for this gene is sodM

Identifier: 148266559

GI number: 148266559

Start: 141896

End: 142495

Strand: Direct

Name: sodM

Synonym: SaurJH9_0119

Alternate gene names: 148266559

Gene position: 141896-142495 (Clockwise)

Preceding gene: 148266558

Following gene: 148266560

Centisome position: 4.88

GC content: 35.33

Gene sequence:

>600_bases
ATGGCATTTAAATTACCAAATTTACCATATGCATATGATGCATTGGAACCATATATAGATCAAAGAACAATGGAGTTTCA
TCACGACAAACATCACAATACGTACGTGACGAAATTAAACGCAACAGTTGAAGGAACAGAGTTAGAGCATCAATCACTAG
CGGATATGATTGCTAACTTAGACAAGGTACCGGAAGCGATGAGGATGTCAGTCCGTAATAATGGCGGTGGTCATTTTAAC
CATTCATTATTCTGGGAAATACTATCACCTAATTCTGAAGAAAAAGGTGGCGTAATAGATGACATCAAAGCGCAGTGGGG
CACTTTAGATGAATTTAAAAATGAATTTGCAAATAAAGCAACAACATTATTTGGATCAGGTTGGACTTGGTTAGTTGTTA
ATGATGGAAAATTAGAAATTGTGACAACGCCAAACCAAGATAATCCATTAACAGAAGGCAAAACACCAATCTTACTATTT
GATGTTTGGGAGCATGCCTACTATCTGAAATATCAAAATAAACGTCCAGACTATATGACTGCATTTTGGAATATTGTTAA
CTGGAAAAAAGTTGATGAATTATACCAAGCAGCAAAATAA

Upstream 100 bases:

>100_bases
ATTTTATATAATTGGATATAACAAATAAATAATAATTATTGCAAAACACACCCGAAATTAATTATTATAAAAGTATATTC
ATAAAAGGAGGAATATACTT

Downstream 100 bases:

>100_bases
TATAACTTAATATAATTGAGGTGGAGCATTTACAAGGTGTTCCACTTTTTTGTACTTAATATCTTTACTTATTTGTTTTT
GTGTAATGGGATAGCACGTA

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MAFKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTELEHQSLADMIANLDKVPEAMRMSVRNNGGGHFN
HSLFWEILSPNSEEKGGVIDDIKAQWGTLDEFKNEFANKATTLFGSGWTWLVVNDGKLEIVTTPNQDNPLTEGKTPILLF
DVWEHAYYLKYQNKRPDYMTAFWNIVNWKKVDELYQAAK

Sequences:

>Translated_199_residues
MAFKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTELEHQSLADMIANLDKVPEAMRMSVRNNGGGHFN
HSLFWEILSPNSEEKGGVIDDIKAQWGTLDEFKNEFANKATTLFGSGWTWLVVNDGKLEIVTTPNQDNPLTEGKTPILLF
DVWEHAYYLKYQNKRPDYMTAFWNIVNWKKVDELYQAAK
>Mature_198_residues
AFKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTELEHQSLADMIANLDKVPEAMRMSVRNNGGGHFNH
SLFWEILSPNSEEKGGVIDDIKAQWGTLDEFKNEFANKATTLFGSGWTWLVVNDGKLEIVTTPNQDNPLTEGKTPILLFD
VWEHAYYLKYQNKRPDYMTAFWNIVNWKKVDELYQAAK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family

Homologues:

Organism=Homo sapiens, GI67782307, Length=201, Percent_Identity=47.2636815920398, Blast_Score=182, Evalue=1e-46,
Organism=Homo sapiens, GI67782305, Length=201, Percent_Identity=47.2636815920398, Blast_Score=182, Evalue=1e-46,
Organism=Homo sapiens, GI67782309, Length=199, Percent_Identity=39.6984924623116, Blast_Score=139, Evalue=2e-33,
Organism=Escherichia coli, GI1790342, Length=206, Percent_Identity=48.0582524271845, Blast_Score=207, Evalue=4e-55,
Organism=Escherichia coli, GI1787946, Length=194, Percent_Identity=47.9381443298969, Blast_Score=186, Evalue=1e-48,
Organism=Caenorhabditis elegans, GI17569479, Length=198, Percent_Identity=42.9292929292929, Blast_Score=154, Evalue=3e-38,
Organism=Caenorhabditis elegans, GI17506561, Length=200, Percent_Identity=42.5, Blast_Score=152, Evalue=8e-38,
Organism=Saccharomyces cerevisiae, GI6321796, Length=208, Percent_Identity=40.3846153846154, Blast_Score=152, Evalue=5e-38,
Organism=Drosophila melanogaster, GI17136812, Length=203, Percent_Identity=46.3054187192118, Blast_Score=172, Evalue=1e-43,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): SODM2_STAA3 (Q2FKC6)

Other databases:

- EMBL:   CP000255
- RefSeq:   YP_492852.1
- HSSP:   Q9RUV2
- ProteinModelPortal:   Q2FKC6
- SMR:   Q2FKC6
- STRING:   Q2FKC6
- EnsemblBacteria:   EBSTAT00000037019
- GeneID:   3913957
- GenomeReviews:   CP000255_GR
- KEGG:   saa:SAUSA300_0135
- eggNOG:   COG0605
- GeneTree:   EBGT00050000024279
- HOGENOM:   HBG507761
- OMA:   KFTETAT
- ProtClustDB:   CLSK884424
- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831
- PANTHER:   PTHR11404
- PIRSF:   PIRSF000349
- PRINTS:   PR01703

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N; SSF46609 SODismutase; SSF54719 SODismutase

EC number: =1.15.1.1

Molecular weight: Translated: 23041; Mature: 22910

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTELEHQSLADMIANL
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECEECCCCCHHHHHHHHHHHH
DKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDDIKAQWGTLDEFKNEFANKA
HHCHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
TTLFGSGWTWLVVNDGKLEIVTTPNQDNPLTEGKTPILLFDVWEHAYYLKYQNKRPDYMT
HEEEECCEEEEEEECCEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCHHH
AFWNIVNWKKVDELYQAAK
HHHHHCCHHHHHHHHHHCC
>Mature Secondary Structure 
AFKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTELEHQSLADMIANL
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECEECCCCCHHHHHHHHHHHH
DKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDDIKAQWGTLDEFKNEFANKA
HHCHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
TTLFGSGWTWLVVNDGKLEIVTTPNQDNPLTEGKTPILLFDVWEHAYYLKYQNKRPDYMT
HEEEECCEEEEEEECCEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCHHH
AFWNIVNWKKVDELYQAAK
HHHHHCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA