| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
Click here to switch to the map view.
The map label for this gene is 147675742
Identifier: 147675742
GI number: 147675742
Start: 307747
End: 308664
Strand: Direct
Name: 147675742
Synonym: VC0395_A0293
Alternate gene names: NA
Gene position: 307747-308664 (Clockwise)
Preceding gene: 147675115
Following gene: 147674233
Centisome position: 10.18
GC content: 46.3
Gene sequence:
>918_bases TTGGGCTTTTTTGTCTCTGAAGGAGAGAGATGCATGACCTATTGCGCAACAGAAGTCACCTTTCCACAAGGAATTACATC ACTAGAGACTCAAGTGATGTTGCTTCAGACTCATCAAAATGGAATGGATATTGTCACCTACAGTACGCCTTTTCACCCTG TCAGTCATATTTGGCCCGATCATCCTGCTGACCGTGGAATCTTAATTTGGCAAGGTAGTGAGTATGCCGTCACTGACTGT GTCGTGGGGGCGATTGAACAAGCCTCGGGTCATTTGTACGTTGGAAATAATATCCCCGTAAAACGTGAAGAGAGCGGCTG GCTCTTTGTGGTCGTTCATCGTCTTGGCGAAGTCATAGCCGCATGCCAAGTGGGCGATAAGGTTCAGTTGCAAGTCGATA CCCAATATCAAGCAAGTTTAAGCCGAGGTCATAGCGCAGGGCATTTAGGTTATTTAGCGCTCAATAAAGTCTTAGCACAG GGGTATTGGCGTAAAGATGCAGAGCGTAAAGACCCGCAGGGTTATTTTGACTTCAACAGCTATGCCCAAATCTCAAGTGA TGTTACTCCTGATTGTTCAACCGATGTCTATCGTTTGGGGAAAACACTGCGTAAGCGAGGTTTAAATAGTGATGATGTGC TGAGAGATTTAAGTTTTATAGAACAAAAGACTAATGAACAGCTTGCGCAGTGGCTAGCTTTAGCCAGCCCAATTCGTCTT GAGTGCACGGGCTCAACCTTGACCGATTCACGTTATTGGGAATGTGACTTACATGAAGCCAATATCGCACGAATTCCTTG TGGAGGCACACACTGCAAGGGTTTAACCGCCTTTCAGTCGATCCAAGTGACACTGAAACAAGTCGATGAACAGCATATTG AGGCAGTCACTTGCGCGCAGCCCTCAGAATCTGAGTGA
Upstream 100 bases:
>100_bases GTAAGACGAATAAAATGACCCTCTCACAAGAGCGACAACGTAAGCGATTGATGAGCATGGTGAAAAACCGCAGAAAATAA TTTATAAAGCCCAAGTTTAC
Downstream 100 bases:
>100_bases TCTTTTTACTATATTCTGTCTTAAGTCTTAAATGGTTTTGTTTTTAGATTTTTATTCTTTTTAAAATTGAAATGCAGAAT ATGTAACTTATGCTTTCGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 305; Mature: 304
Protein sequence:
>305_residues MGFFVSEGERCMTYCATEVTFPQGITSLETQVMLLQTHQNGMDIVTYSTPFHPVSHIWPDHPADRGILIWQGSEYAVTDC VVGAIEQASGHLYVGNNIPVKREESGWLFVVVHRLGEVIAACQVGDKVQLQVDTQYQASLSRGHSAGHLGYLALNKVLAQ GYWRKDAERKDPQGYFDFNSYAQISSDVTPDCSTDVYRLGKTLRKRGLNSDDVLRDLSFIEQKTNEQLAQWLALASPIRL ECTGSTLTDSRYWECDLHEANIARIPCGGTHCKGLTAFQSIQVTLKQVDEQHIEAVTCAQPSESE
Sequences:
>Translated_305_residues MGFFVSEGERCMTYCATEVTFPQGITSLETQVMLLQTHQNGMDIVTYSTPFHPVSHIWPDHPADRGILIWQGSEYAVTDC VVGAIEQASGHLYVGNNIPVKREESGWLFVVVHRLGEVIAACQVGDKVQLQVDTQYQASLSRGHSAGHLGYLALNKVLAQ GYWRKDAERKDPQGYFDFNSYAQISSDVTPDCSTDVYRLGKTLRKRGLNSDDVLRDLSFIEQKTNEQLAQWLALASPIRL ECTGSTLTDSRYWECDLHEANIARIPCGGTHCKGLTAFQSIQVTLKQVDEQHIEAVTCAQPSESE >Mature_304_residues GFFVSEGERCMTYCATEVTFPQGITSLETQVMLLQTHQNGMDIVTYSTPFHPVSHIWPDHPADRGILIWQGSEYAVTDCV VGAIEQASGHLYVGNNIPVKREESGWLFVVVHRLGEVIAACQVGDKVQLQVDTQYQASLSRGHSAGHLGYLALNKVLAQG YWRKDAERKDPQGYFDFNSYAQISSDVTPDCSTDVYRLGKTLRKRGLNSDDVLRDLSFIEQKTNEQLAQWLALASPIRLE CTGSTLTDSRYWECDLHEANIARIPCGGTHCKGLTAFQSIQVTLKQVDEQHIEAVTCAQPSESE
Specific function: Unknown
COG id: COG2872
COG function: function code R; Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33975; Mature: 33844
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGFFVSEGERCMTYCATEVTFPQGITSLETQVMLLQTHQNGMDIVTYSTPFHPVSHIWPD CCCCCCCCCHHHHHHHHHCCCCCCCHHHHHEEEEEEECCCCCEEEEECCCCCCHHHCCCC HPADRGILIWQGSEYAVTDCVVGAIEQASGHLYVGNNIPVKREESGWLFVVVHRLGEVIA CCCCCEEEEEECCCEEHHHHHHHHHHHCCCCEEECCCCCCEECCCCEEEEEHHHHHHHHH ACQVGDKVQLQVDTQYQASLSRGHSAGHLGYLALNKVLAQGYWRKDAERKDPQGYFDFNS HHCCCCEEEEEECCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCC YAQISSDVTPDCSTDVYRLGKTLRKRGLNSDDVLRDLSFIEQKTNEQLAQWLALASPIRL HHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE ECTGSTLTDSRYWECDLHEANIARIPCGGTHCKGLTAFQSIQVTLKQVDEQHIEAVTCAQ EECCCCCCCCCEEEEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCEEEECC PSESE CCCCC >Mature Secondary Structure GFFVSEGERCMTYCATEVTFPQGITSLETQVMLLQTHQNGMDIVTYSTPFHPVSHIWPD CCCCCCCCHHHHHHHHHCCCCCCCHHHHHEEEEEEECCCCCEEEEECCCCCCHHHCCCC HPADRGILIWQGSEYAVTDCVVGAIEQASGHLYVGNNIPVKREESGWLFVVVHRLGEVIA CCCCCEEEEEECCCEEHHHHHHHHHHHCCCCEEECCCCCCEECCCCEEEEEHHHHHHHHH ACQVGDKVQLQVDTQYQASLSRGHSAGHLGYLALNKVLAQGYWRKDAERKDPQGYFDFNS HHCCCCEEEEEECCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCC YAQISSDVTPDCSTDVYRLGKTLRKRGLNSDDVLRDLSFIEQKTNEQLAQWLALASPIRL HHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE ECTGSTLTDSRYWECDLHEANIARIPCGGTHCKGLTAFQSIQVTLKQVDEQHIEAVTCAQ EECCCCCCCCCEEEEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCEEEECC PSESE CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA