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The map label for this gene is rodZ [H]

Identifier: 147675566

GI number: 147675566

Start: 300615

End: 301796

Strand: Direct

Name: rodZ [H]

Synonym: VC0395_A0287

Alternate gene names: 147675566

Gene position: 300615-301796 (Clockwise)

Preceding gene: 147675306

Following gene: 147673394

Centisome position: 9.94

GC content: 48.82

Gene sequence:

>1182_bases
TTGCACCGATTAAGCCAAGTTGTTCCATTACTACCTATAATCAAAAATAAAAGTGAATGGCCCAGCGGCTTAGTCCTGAC
TAAGAGATTGAAATTACGGATGAATACTGAACAGCAAGATTACAACCAAACTGAGACGACCGAGCAAGTAAATCAACCTG
CCATCGAGAAAGTTGCTCCCGGCACTTTACTCAAGCAAAAACGTGAAGATTTGGGGCTGACTCAGCGCCAAATCGCTGAC
CGCCTCAGATTACGCCTTTCTATTATCCAAAGCATTGAAGAGAACCGTTTTGAAGATGGTCAAGTCGCCACTTTTACTCG
CGGTTATTTGCGTTCGTATGCCAAAGCGGTGGGTATTCGTGAATCTGAGATCTTGTGTGCTTTTGATGACAGCTATTGCC
AAAAGCCAGAAGTTCAGCCGGATATGAAAAGCTTCTCGAAAAAGACCAAGCGTCAGTTGCACGACAGCCGAATCATGCTG
ATCACTTGGGTGATCTTAGCGGTTATCGTCGGCATGTCGACCTTGTGGTGGTGGCAAAATAGCCAGAAGAACAGCTTAAT
CCCGGATAAAACAACCATTGCGCCGAGTGCTATTTCGGATATTCAGTCTAGCAATGACGCCAGTCTTGCCAATGAAGACT
TCGCAACCGTTCCTCCACTCAATGAGCTACAAGATGCGGCGCCAGCCAGTGAAGAGGCACCGATGAGCCAAGAGTCTCTT
TCTGGTGAGGCCAGTGAATTGACTCCGCCAGCACCGAATGAAGCTGATGTGGTGACAGATAAACCTGTGGTTGAAGAAAC
GGCGGCGGCACCAGTAGCACCTGCTCAGCCTCAAGGACAAACTCCAGTTCAGTCTCAAGCTCCAGTGGCGGCTGCGCCTG
TGACTCAACCTGAAGCGGCGCCTAGTGCACCTAGTCAACCTGTAAGCTCTTCCACTGAGAGTGCTTCCGCACTGCTGGTG
ATGAATTTTTCTGCCGATTGCTGGATTCAAGTCAAAGATGCCACGGGCAAAATACTGTCAACGGGTGTGAAAAAAGCAGG
GCAGAGTGTGAGTTTGAGTGGCCAGCGCCCTTATAAATTGGTGTTGGGTGCACCAGAAGGGGTTTCAATCACATTAGCGA
GTGAACCCGTCGACCTTTCTGGGTATACTTCCGGCAAAGTAGCAAGATTGACCTTACCTTAG

Upstream 100 bases:

>100_bases
TTATTGGCCATTTCTTTATTGTTTAGTCAACAATATCTATTAGAATGAGGCAAATTTCTCAAACTTGATTTGAGCTATAC
CCAAGCGACGCGCTAACCGA

Downstream 100 bases:

>100_bases
AAAAATGTCTATGCAACATGAGTCTCCTATCAAACGTCGCCCCTCGACACGTATCTATGTGGGCGACGTTCCTATTGGTG
ATGGTGCGCCCATCGCCGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MHRLSQVVPLLPIIKNKSEWPSGLVLTKRLKLRMNTEQQDYNQTETTEQVNQPAIEKVAPGTLLKQKREDLGLTQRQIAD
RLRLRLSIIQSIEENRFEDGQVATFTRGYLRSYAKAVGIRESEILCAFDDSYCQKPEVQPDMKSFSKKTKRQLHDSRIML
ITWVILAVIVGMSTLWWWQNSQKNSLIPDKTTIAPSAISDIQSSNDASLANEDFATVPPLNELQDAAPASEEAPMSQESL
SGEASELTPPAPNEADVVTDKPVVEETAAAPVAPAQPQGQTPVQSQAPVAAAPVTQPEAAPSAPSQPVSSSTESASALLV
MNFSADCWIQVKDATGKILSTGVKKAGQSVSLSGQRPYKLVLGAPEGVSITLASEPVDLSGYTSGKVARLTLP

Sequences:

>Translated_393_residues
MHRLSQVVPLLPIIKNKSEWPSGLVLTKRLKLRMNTEQQDYNQTETTEQVNQPAIEKVAPGTLLKQKREDLGLTQRQIAD
RLRLRLSIIQSIEENRFEDGQVATFTRGYLRSYAKAVGIRESEILCAFDDSYCQKPEVQPDMKSFSKKTKRQLHDSRIML
ITWVILAVIVGMSTLWWWQNSQKNSLIPDKTTIAPSAISDIQSSNDASLANEDFATVPPLNELQDAAPASEEAPMSQESL
SGEASELTPPAPNEADVVTDKPVVEETAAAPVAPAQPQGQTPVQSQAPVAAAPVTQPEAAPSAPSQPVSSSTESASALLV
MNFSADCWIQVKDATGKILSTGVKKAGQSVSLSGQRPYKLVLGAPEGVSITLASEPVDLSGYTSGKVARLTLP
>Mature_393_residues
MHRLSQVVPLLPIIKNKSEWPSGLVLTKRLKLRMNTEQQDYNQTETTEQVNQPAIEKVAPGTLLKQKREDLGLTQRQIAD
RLRLRLSIIQSIEENRFEDGQVATFTRGYLRSYAKAVGIRESEILCAFDDSYCQKPEVQPDMKSFSKKTKRQLHDSRIML
ITWVILAVIVGMSTLWWWQNSQKNSLIPDKTTIAPSAISDIQSSNDASLANEDFATVPPLNELQDAAPASEEAPMSQESL
SGEASELTPPAPNEADVVTDKPVVEETAAAPVAPAQPQGQTPVQSQAPVAAAPVTQPEAAPSAPSQPVSSSTESASALLV
MNFSADCWIQVKDATGKILSTGVKKAGQSVSLSGQRPYKLVLGAPEGVSITLASEPVDLSGYTSGKVARLTLP

Specific function: Cytoskeletal protein that is involved in cell-shape control through regulation of the length of the long axis [H]

COG id: COG1426

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein. Note=Forms helical filaments along the long axis of the cell (By similarity) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788864, Length=366, Percent_Identity=34.9726775956284, Blast_Score=171, Evalue=5e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 42567; Mature: 42567

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRLSQVVPLLPIIKNKSEWPSGLVLTKRLKLRMNTEQQDYNQTETTEQVNQPAIEKVAP
CCCHHHHHHHHHHHCCCCCCCCCEEEEEEEHEEECCCHHHCCHHHHHHHHCCCHHHHHCC
GTLLKQKREDLGLTQRQIADRLRLRLSIIQSIEENRFEDGQVATFTRGYLRSYAKAVGIR
CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHCCC
ESEILCAFDDSYCQKPEVQPDMKSFSKKTKRQLHDSRIMLITWVILAVIVGMSTLWWWQN
CCCEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEECC
SQKNSLIPDKTTIAPSAISDIQSSNDASLANEDFATVPPLNELQDAAPASEEAPMSQESL
CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHC
SGEASELTPPAPNEADVVTDKPVVEETAAAPVAPAQPQGQTPVQSQAPVAAAPVTQPEAA
CCCHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PSAPSQPVSSSTESASALLVMNFSADCWIQVKDATGKILSTGVKKAGQSVSLSGQRPYKL
CCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCEEE
VLGAPEGVSITLASEPVDLSGYTSGKVARLTLP
EEECCCCCEEEEECCCCCCCCCCCCCEEEEECC
>Mature Secondary Structure
MHRLSQVVPLLPIIKNKSEWPSGLVLTKRLKLRMNTEQQDYNQTETTEQVNQPAIEKVAP
CCCHHHHHHHHHHHCCCCCCCCCEEEEEEEHEEECCCHHHCCHHHHHHHHCCCHHHHHCC
GTLLKQKREDLGLTQRQIADRLRLRLSIIQSIEENRFEDGQVATFTRGYLRSYAKAVGIR
CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHCCC
ESEILCAFDDSYCQKPEVQPDMKSFSKKTKRQLHDSRIMLITWVILAVIVGMSTLWWWQN
CCCEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEECC
SQKNSLIPDKTTIAPSAISDIQSSNDASLANEDFATVPPLNELQDAAPASEEAPMSQESL
CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHC
SGEASELTPPAPNEADVVTDKPVVEETAAAPVAPAQPQGQTPVQSQAPVAAAPVTQPEAA
CCCHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PSAPSQPVSSSTESASALLVMNFSADCWIQVKDATGKILSTGVKKAGQSVSLSGQRPYKL
CCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCEEE
VLGAPEGVSITLASEPVDLSGYTSGKVARLTLP
EEECCCCCEEEEECCCCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA