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The map label for this gene is rpfG [H]

Identifier: 146343884

GI number: 146343884

Start: 7447978

End: 7449087

Strand: Reverse

Name: rpfG [H]

Synonym: BRADO7135

Alternate gene names: 146343884

Gene position: 7449087-7447978 (Counterclockwise)

Preceding gene: 146343885

Following gene: 146343883

Centisome position: 99.9

GC content: 66.85

Gene sequence:

>1110_bases
ATGAGCGCGACAGCCAAGCAGACCGTGACCCAGACCGCGACCAGGCGTCATCTCCTGCTCGCGTCCGATCGCGGCGACCA
GAGCAGCGAGCTGGCGCGCATCCTGCGCTCCGTCGGCGACGTCGACCTGATGCCGACCACCGACATTCCTGAAAATCCCG
GCAACCGCTTCTCCGGCGTCATCGTCGACATCAACCTGCGCTCGCCCGAGAGCGTGCAGCGGGTGCGCAAGAAGCTGTCC
TCGCGCGCCTATAGCGACGTGCCGCGCCTGTTCGTTCTGGCCGAGGCGCTGCATCATGCCACGATGCAGGCCTGGGCGCT
GGGCGCGACCGACACCATCGCGCGTCCGTTCAGCGCCGCCGACGTACTGCAGCGGGTCCGCTCGGCGCTGCCGGCCGATG
ACGGCTATGACGAGAGCGATCGCGGCAAGCTGCTCAACCGCGGGATCGAGGCCGCTCAGGCCGTGATGGCCAAGATCTTC
GAGAAGCTGCCGGAGGGGATCCCGCTGACGATGGAGGACATCGTCGCGGCCGAGAACAAGATCCTCAAGGCGATCAAGCA
TTCGTCCTTGCGCGAGTGGATGACCGTGGTCGGCTGCCACCACAACGACACCTATCGGCACTGCCTGTTCGTGACCGGGC
TTGCGGTCGGCTTCTCGATCCATCTCGGCATGCGTGAGGACGATCAGCGCCGGCTGGTCCGCGCGGCGCTGTTGCACGAC
GTCGGCAAGGCCTTCATCCCCGTCGCGATCCTCGACAAGCAGGGCAAGCTGACCGCCGAGGAGATCGCGCTGCTGCGCCA
GCATCCGCGCCGCGGCTACGAGGCGCTGTCCCGGCAGGGCGGCTTCCCGCCGGAAATGCTCGACGTGATCCTGCATCACC
ACGAATTCCTCGACGGCTCCGGCTATCCGGACGCGCTGCACAGTGAGCAGATCAGCGATATCGTGCGCCTGACCACGATC
GTCGACATCTACGCCGCGCTGATCGAGCACCGCGCCTACCGTCCGGCGTTCACCCATGCGCGCGCCTTCCAGATCATGGA
GAACATGGGCCCGAAGCTCGACCAGCAGCTGCTGCAGGCGTTCCGCCCGGTCGCGATGGGCGCGCATTGA

Upstream 100 bases:

>100_bases
GCTCACCCAAACGCAGACAGCTTGAACGATCGGATTAAGCCGCGTCGAACCCGTATCCAAGTAGCTTGCAAAGGCAGCAA
ACCGAGAGGGGCGAGCACGT

Downstream 100 bases:

>100_bases
GACTCTCGGGCTGAGACGGCGGCTAGCTGCTGGACGCAAGTGCCCGGGTGCAGCTGCGCACTATCCTACCTGCCGTCGAG
GAAGCAAGCGGGGCGATCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 368

Protein sequence:

>369_residues
MSATAKQTVTQTATRRHLLLASDRGDQSSELARILRSVGDVDLMPTTDIPENPGNRFSGVIVDINLRSPESVQRVRKKLS
SRAYSDVPRLFVLAEALHHATMQAWALGATDTIARPFSAADVLQRVRSALPADDGYDESDRGKLLNRGIEAAQAVMAKIF
EKLPEGIPLTMEDIVAAENKILKAIKHSSLREWMTVVGCHHNDTYRHCLFVTGLAVGFSIHLGMREDDQRRLVRAALLHD
VGKAFIPVAILDKQGKLTAEEIALLRQHPRRGYEALSRQGGFPPEMLDVILHHHEFLDGSGYPDALHSEQISDIVRLTTI
VDIYAALIEHRAYRPAFTHARAFQIMENMGPKLDQQLLQAFRPVAMGAH

Sequences:

>Translated_369_residues
MSATAKQTVTQTATRRHLLLASDRGDQSSELARILRSVGDVDLMPTTDIPENPGNRFSGVIVDINLRSPESVQRVRKKLS
SRAYSDVPRLFVLAEALHHATMQAWALGATDTIARPFSAADVLQRVRSALPADDGYDESDRGKLLNRGIEAAQAVMAKIF
EKLPEGIPLTMEDIVAAENKILKAIKHSSLREWMTVVGCHHNDTYRHCLFVTGLAVGFSIHLGMREDDQRRLVRAALLHD
VGKAFIPVAILDKQGKLTAEEIALLRQHPRRGYEALSRQGGFPPEMLDVILHHHEFLDGSGYPDALHSEQISDIVRLTTI
VDIYAALIEHRAYRPAFTHARAFQIMENMGPKLDQQLLQAFRPVAMGAH
>Mature_368_residues
SATAKQTVTQTATRRHLLLASDRGDQSSELARILRSVGDVDLMPTTDIPENPGNRFSGVIVDINLRSPESVQRVRKKLSS
RAYSDVPRLFVLAEALHHATMQAWALGATDTIARPFSAADVLQRVRSALPADDGYDESDRGKLLNRGIEAAQAVMAKIFE
KLPEGIPLTMEDIVAAENKILKAIKHSSLREWMTVVGCHHNDTYRHCLFVTGLAVGFSIHLGMREDDQRRLVRAALLHDV
GKAFIPVAILDKQGKLTAEEIALLRQHPRRGYEALSRQGGFPPEMLDVILHHHEFLDGSGYPDALHSEQISDIVRLTTIV
DIYAALIEHRAYRPAFTHARAFQIMENMGPKLDQQLLQAFRPVAMGAH

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 41032; Mature: 40900

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSATAKQTVTQTATRRHLLLASDRGDQSSELARILRSVGDVDLMPTTDIPENPGNRFSGV
CCCCHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEE
IVDINLRSPESVQRVRKKLSSRAYSDVPRLFVLAEALHHATMQAWALGATDTIARPFSAA
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHH
DVLQRVRSALPADDGYDESDRGKLLNRGIEAAQAVMAKIFEKLPEGIPLTMEDIVAAENK
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
ILKAIKHSSLREWMTVVGCHHNDTYRHCLFVTGLAVGFSIHLGMREDDQRRLVRAALLHD
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHH
VGKAFIPVAILDKQGKLTAEEIALLRQHPRRGYEALSRQGGFPPEMLDVILHHHEFLDGS
HHHHHHHHHEECCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
GYPDALHSEQISDIVRLTTIVDIYAALIEHRAYRPAFTHARAFQIMENMGPKLDQQLLQA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
FRPVAMGAH
HHHHHCCCC
>Mature Secondary Structure 
SATAKQTVTQTATRRHLLLASDRGDQSSELARILRSVGDVDLMPTTDIPENPGNRFSGV
CCCHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEE
IVDINLRSPESVQRVRKKLSSRAYSDVPRLFVLAEALHHATMQAWALGATDTIARPFSAA
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHH
DVLQRVRSALPADDGYDESDRGKLLNRGIEAAQAVMAKIFEKLPEGIPLTMEDIVAAENK
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
ILKAIKHSSLREWMTVVGCHHNDTYRHCLFVTGLAVGFSIHLGMREDDQRRLVRAALLHD
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHH
VGKAFIPVAILDKQGKLTAEEIALLRQHPRRGYEALSRQGGFPPEMLDVILHHHEFLDGS
HHHHHHHHHEECCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
GYPDALHSEQISDIVRLTTIVDIYAALIEHRAYRPAFTHARAFQIMENMGPKLDQQLLQA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
FRPVAMGAH
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]