| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is yagR [C]
Identifier: 146343885
GI number: 146343885
Start: 7449305
End: 7451587
Strand: Reverse
Name: yagR [C]
Synonym: BRADO7136
Alternate gene names: 146343885
Gene position: 7451587-7449305 (Counterclockwise)
Preceding gene: 146343886
Following gene: 146343884
Centisome position: 99.93
GC content: 66.89
Gene sequence:
>2283_bases ATGAACCAGCACGTGAAAGCAGCGCCCACCATGGCCACAGATCTCAGCCGCCGCTCCTTCCTGGTCGGCACCGCCGCCAC CGGCCTCGTGCTCGGCTATGCCGGCCTCGCCGATTCCGCGCTCGCCGCGACCACGCCCTCGGCCTTCGAGCCGACCGTGT GGTACTCGATCGCACCCGATGGTCTGGTCACCGTGACCTGCGGCAAGGCCGACATGGGCCAGCACATTGCCTCCACCATG GCGCAGATCATCTGCGAGGAGCTCGGGGCGGCCTGGAAGGACATGCGCGTCCAGCTCGCCTCCAACGATCCGAAGTTCAA CGATCCCGTGCTCGGCGCCCAGATCACCGGCGGCAGCTGGAGCACGATGATGAACTTCGACGCCATGAGCCGCGCCGGCG CTGCCGGACGCATCGCGCTCACCGAAGCCGCTGCGACCGCGATGGGCGTGCCGGCCAAGGAGCTCGTGGTGCGCGACGGC GTCGTGATGCATCCGAAGACCAAGAAGCAGATGAGCTATGCCGAGATCGTCAAGAGCGGCAAGATCACCAAGAGCTTCAC GCCCGACGAGCTCAAGGCGATCACGCTGAAGACGCCCGATCAATACACCATGATCGGCGTCTCGGTGCCGCAGCTCGACA TCCCGTCGAAGACCAACGGCACCGCGAAGTACGGCATCGATACGATGCTGCCGGGCATGGTCTACGGCAAGGTGGTCACG CCACCGGTCCGTTTCGGCGCGACAGTGAAGTCGGTGGATGACTCGGAGGCCAAGAAGGTCCCGGGCTTCATCAAGGCGGT CACGCTCGATGACAAGACCGGCTCCACGTCAGGGTGGGTGGTCGCAGTTGCCAACACCTATGCCAATGCCAGGAAGGCGG CGGATGCGCTGAAGATCACCTACGACAACGGCCCGTACGCCAATGTCAGCACCGCGAGCATCCTCGCCGAGGCCAAGAAG CTGCAGGCCCAGGATGACTCCGGACAGTTCTTCGTCAAGGACGGCGATGCCACGGCCGCGCTGTCCGGTGCGGCCAAGGT GCTGGAGGCGGAGTACACCACCAGCATCAACATCCACGCGCCGCTGGAGCCGATGAACGCGACCGCCGAGTTCAAGGGCG ACATCCTGCACATCTACTCCGGCAACCAGTTCGCGACCCGCTCCGGTGCAATCGCGGCCGGAGCGGCCGGGATCGATCCG AAATATGTCGTGATGCACCAAGCCTGGCTCGGCGGCGGCTTCGGCCGCAGGCTCGATGCCGACATGATGGTGCCGGCGGT GCAGGCGGCCAAGGCCGTCGGCAAGCCGGTCAAGGTGATCTACTCCCGCGAGAACGATATGACGATGGACTACTCGCGGC CGCTCACCTACCAGAAGGTCAAGGCGGGGCTCGACAGCGACGGCAAGCTGATCGCGCTCAGCCACGACGTCGTCTCGGCC TGGCCGACGGCGCGCTGGGGCATCCCGGACTTCCTGACGCCCTCGGTCGACAAGAAGGGCCCGCTCGACTCGTTCACGGT CAACGGCGCCGACTTCTTCTACACCGTGCCCAACCATCATGTGCGCGCGATCAAGAACGAGCTCGCGCATAATGCGACGC CGTCGGGGCAGCTCCGCTCGGTAGCGCCGGGTTGGACGTTCTGGGCGGTCGAGAGCATGATCGACGAGATCGCGGCCGCG TCGGGTCAGGACCCGGCCCAGTTCCGCATCGCGCTGCTCGACGGCAAGGGCAAGAACGATGGCGGCGCGCAGCGGCTGCG CAACACGCTGCTCGCGGCGATGGGCCTGTCAGGCTATGGCGCCAAGAAGCTGCCGAAGGGCGAGGGCATGGGCGTCGCCT GCGTGTCGTCGCAGGAGCGCGCGACCGCGAGCTGGACGGCGTGCGTCGCCCATGTCGCGGTCGCCGACAACGGCGCGGTC ACGGTGAAGAAGCTCACCGTGGCGACCGATGTCGGCACGCAGGTGCATCCCGACAACATCCGCGCCCAGGTCGAGGGTGC GGCGCTGTGGGGCCTGTCGCTGGCGATGTACGAGAAGGCGACGTTGAAGGACGGCGGCATCGAGCAGACCAACTTCGACA GCTACACGCCGCTGCGCATGAGCCAGGTGCCGGAGGTCGCGATCGCCGTGATCGCCAATGGCGAGAAGGCGACCGGCGTC GGCGAGCCCGCGGTGACCGTGGTCGCGCCTGCGCTCGGCAACGCCATCTACAACGCCTGCGGCGCCCGGCTGCGGTCGCT GCCGATCACCGCGGAAGCGGTGAAGGCGGCGATGAAGGCCTGA
Upstream 100 bases:
>100_bases ATCTCTGCCGCTGCATGACCTATTCGCGGATCCAGAAGGCGATCCAGCGCGCCGCATCCGAGATGCGCACCGCGTCGAAC ACCAGCGACCGGAGGGCGAC
Downstream 100 bases:
>100_bases CGCCACACGCCAGCAACAACAACCTCGGAACCGCCGGAGATGCCCTCTCCGGCGGTTTTCGTTTGGTCAGGGCACACCGC CGGCGGCGCGCAATTCGAGC
Product: putative aldehyde dehydrogenase
Products: NA
Alternate protein names: ALDH [H]
Number of amino acids: Translated: 760; Mature: 760
Protein sequence:
>760_residues MNQHVKAAPTMATDLSRRSFLVGTAATGLVLGYAGLADSALAATTPSAFEPTVWYSIAPDGLVTVTCGKADMGQHIASTM AQIICEELGAAWKDMRVQLASNDPKFNDPVLGAQITGGSWSTMMNFDAMSRAGAAGRIALTEAAATAMGVPAKELVVRDG VVMHPKTKKQMSYAEIVKSGKITKSFTPDELKAITLKTPDQYTMIGVSVPQLDIPSKTNGTAKYGIDTMLPGMVYGKVVT PPVRFGATVKSVDDSEAKKVPGFIKAVTLDDKTGSTSGWVVAVANTYANARKAADALKITYDNGPYANVSTASILAEAKK LQAQDDSGQFFVKDGDATAALSGAAKVLEAEYTTSINIHAPLEPMNATAEFKGDILHIYSGNQFATRSGAIAAGAAGIDP KYVVMHQAWLGGGFGRRLDADMMVPAVQAAKAVGKPVKVIYSRENDMTMDYSRPLTYQKVKAGLDSDGKLIALSHDVVSA WPTARWGIPDFLTPSVDKKGPLDSFTVNGADFFYTVPNHHVRAIKNELAHNATPSGQLRSVAPGWTFWAVESMIDEIAAA SGQDPAQFRIALLDGKGKNDGGAQRLRNTLLAAMGLSGYGAKKLPKGEGMGVACVSSQERATASWTACVAHVAVADNGAV TVKKLTVATDVGTQVHPDNIRAQVEGAALWGLSLAMYEKATLKDGGIEQTNFDSYTPLRMSQVPEVAIAVIANGEKATGV GEPAVTVVAPALGNAIYNACGARLRSLPITAEAVKAAMKA
Sequences:
>Translated_760_residues MNQHVKAAPTMATDLSRRSFLVGTAATGLVLGYAGLADSALAATTPSAFEPTVWYSIAPDGLVTVTCGKADMGQHIASTM AQIICEELGAAWKDMRVQLASNDPKFNDPVLGAQITGGSWSTMMNFDAMSRAGAAGRIALTEAAATAMGVPAKELVVRDG VVMHPKTKKQMSYAEIVKSGKITKSFTPDELKAITLKTPDQYTMIGVSVPQLDIPSKTNGTAKYGIDTMLPGMVYGKVVT PPVRFGATVKSVDDSEAKKVPGFIKAVTLDDKTGSTSGWVVAVANTYANARKAADALKITYDNGPYANVSTASILAEAKK LQAQDDSGQFFVKDGDATAALSGAAKVLEAEYTTSINIHAPLEPMNATAEFKGDILHIYSGNQFATRSGAIAAGAAGIDP KYVVMHQAWLGGGFGRRLDADMMVPAVQAAKAVGKPVKVIYSRENDMTMDYSRPLTYQKVKAGLDSDGKLIALSHDVVSA WPTARWGIPDFLTPSVDKKGPLDSFTVNGADFFYTVPNHHVRAIKNELAHNATPSGQLRSVAPGWTFWAVESMIDEIAAA SGQDPAQFRIALLDGKGKNDGGAQRLRNTLLAAMGLSGYGAKKLPKGEGMGVACVSSQERATASWTACVAHVAVADNGAV TVKKLTVATDVGTQVHPDNIRAQVEGAALWGLSLAMYEKATLKDGGIEQTNFDSYTPLRMSQVPEVAIAVIANGEKATGV GEPAVTVVAPALGNAIYNACGARLRSLPITAEAVKAAMKA >Mature_760_residues MNQHVKAAPTMATDLSRRSFLVGTAATGLVLGYAGLADSALAATTPSAFEPTVWYSIAPDGLVTVTCGKADMGQHIASTM AQIICEELGAAWKDMRVQLASNDPKFNDPVLGAQITGGSWSTMMNFDAMSRAGAAGRIALTEAAATAMGVPAKELVVRDG VVMHPKTKKQMSYAEIVKSGKITKSFTPDELKAITLKTPDQYTMIGVSVPQLDIPSKTNGTAKYGIDTMLPGMVYGKVVT PPVRFGATVKSVDDSEAKKVPGFIKAVTLDDKTGSTSGWVVAVANTYANARKAADALKITYDNGPYANVSTASILAEAKK LQAQDDSGQFFVKDGDATAALSGAAKVLEAEYTTSINIHAPLEPMNATAEFKGDILHIYSGNQFATRSGAIAAGAAGIDP KYVVMHQAWLGGGFGRRLDADMMVPAVQAAKAVGKPVKVIYSRENDMTMDYSRPLTYQKVKAGLDSDGKLIALSHDVVSA WPTARWGIPDFLTPSVDKKGPLDSFTVNGADFFYTVPNHHVRAIKNELAHNATPSGQLRSVAPGWTFWAVESMIDEIAAA SGQDPAQFRIALLDGKGKNDGGAQRLRNTLLAAMGLSGYGAKKLPKGEGMGVACVSSQERATASWTACVAHVAVADNGAV TVKKLTVATDVGTQVHPDNIRAQVEGAALWGLSLAMYEKATLKDGGIEQTNFDSYTPLRMSQVPEVAIAVIANGEKATGV GEPAVTVVAPALGNAIYNACGARLRSLPITAEAVKAAMKA
Specific function: Unknown
COG id: COG1529
COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI91823271, Length=431, Percent_Identity=23.8979118329466, Blast_Score=81, Evalue=4e-15, Organism=Escherichia coli, GI1786478, Length=397, Percent_Identity=27.7078085642317, Blast_Score=84, Evalue=3e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000674 - InterPro: IPR008274 - InterPro: IPR012368 - InterPro: IPR006311 [H]
Pfam domain/function: PF02738 Ald_Xan_dh_C2 [H]
EC number: =1.2.99.3 [H]
Molecular weight: Translated: 79766; Mature: 79766
Theoretical pI: Translated: 8.39; Mature: 8.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQHVKAAPTMATDLSRRSFLVGTAATGLVLGYAGLADSALAATTPSAFEPTVWYSIAPD CCCCCCCCCCHHHHCCCCEEEEEEHHHHHHHEECCCCCCCHHCCCCCCCCCEEEEEECCC GLVTVTCGKADMGQHIASTMAQIICEELGAAWKDMRVQLASNDPKFNDPVLGAQITGGSW CEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHEEEEEECCCCCCCCCEEEEEECCCCC STMMNFDAMSRAGAAGRIALTEAAATAMGVPAKELVVRDGVVMHPKTKKQMSYAEIVKSG CEEEEHHHHHCCCCCCEEEEEHHHHHHCCCCHHHHHEECCEEECCCHHHHHHHHHHHHCC KITKSFTPDELKAITLKTPDQYTMIGVSVPQLDIPSKTNGTAKYGIDTMLPGMVYGKVVT CCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCEECCHHHHCCCHHCCCEEC PPVRFGATVKSVDDSEAKKVPGFIKAVTLDDKTGSTSGWVVAVANTYANARKAADALKIT CCHHHCCEEECCCCCHHHHCCCEEEEEEECCCCCCCCCEEEEEECHHHHHHHCCCEEEEE YDNGPYANVSTASILAEAKKLQAQDDSGQFFVKDGDATAALSGAAKVLEAEYTTSINIHA ECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHEECCEEEEEEEC PLEPMNATAEFKGDILHIYSGNQFATRSGAIAAGAAGIDPKYVVMHQAWLGGGFGRRLDA CCCCCCCCEECCCCEEEEEECCEEECCCCCEEECCCCCCCCEEEEEEHHHCCCCCCCCCC DMMVPAVQAAKAVGKPVKVIYSRENDMTMDYSRPLTYQKVKAGLDSDGKLIALSHDVVSA HHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCCCCHHHHHCCCCCCCCEEEEECHHHHC WPTARWGIPDFLTPSVDKKGPLDSFTVNGADFFYTVPNHHVRAIKNELAHNATPSGQLRS CCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEECCCHHHHHHHHHHHCCCCCCCCCEE VAPGWTFWAVESMIDEIAAASGQDPAQFRIALLDGKGKNDGGAQRLRNTLLAAMGLSGYG CCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCC AKKLPKGEGMGVACVSSQERATASWTACVAHVAVADNGAVTVKKLTVATDVGTQVHPDNI CCCCCCCCCCEEEEECCCCCCHHHHHHHHEEEEEECCCCEEEEEEEEEECCCCEECCCCC RAQVEGAALWGLSLAMYEKATLKDGGIEQTNFDSYTPLRMSQVPEVAIAVIANGEKATGV EEEECCEEEEHHEEEHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCEEEEEEECCCCCCCC GEPAVTVVAPALGNAIYNACGARLRSLPITAEAVKAAMKA CCCCCEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC >Mature Secondary Structure MNQHVKAAPTMATDLSRRSFLVGTAATGLVLGYAGLADSALAATTPSAFEPTVWYSIAPD CCCCCCCCCCHHHHCCCCEEEEEEHHHHHHHEECCCCCCCHHCCCCCCCCCEEEEEECCC GLVTVTCGKADMGQHIASTMAQIICEELGAAWKDMRVQLASNDPKFNDPVLGAQITGGSW CEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHEEEEEECCCCCCCCCEEEEEECCCCC STMMNFDAMSRAGAAGRIALTEAAATAMGVPAKELVVRDGVVMHPKTKKQMSYAEIVKSG CEEEEHHHHHCCCCCCEEEEEHHHHHHCCCCHHHHHEECCEEECCCHHHHHHHHHHHHCC KITKSFTPDELKAITLKTPDQYTMIGVSVPQLDIPSKTNGTAKYGIDTMLPGMVYGKVVT CCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCEECCHHHHCCCHHCCCEEC PPVRFGATVKSVDDSEAKKVPGFIKAVTLDDKTGSTSGWVVAVANTYANARKAADALKIT CCHHHCCEEECCCCCHHHHCCCEEEEEEECCCCCCCCCEEEEEECHHHHHHHCCCEEEEE YDNGPYANVSTASILAEAKKLQAQDDSGQFFVKDGDATAALSGAAKVLEAEYTTSINIHA ECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHEECCEEEEEEEC PLEPMNATAEFKGDILHIYSGNQFATRSGAIAAGAAGIDPKYVVMHQAWLGGGFGRRLDA CCCCCCCCEECCCCEEEEEECCEEECCCCCEEECCCCCCCCEEEEEEHHHCCCCCCCCCC DMMVPAVQAAKAVGKPVKVIYSRENDMTMDYSRPLTYQKVKAGLDSDGKLIALSHDVVSA HHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCCCCHHHHHCCCCCCCCEEEEECHHHHC WPTARWGIPDFLTPSVDKKGPLDSFTVNGADFFYTVPNHHVRAIKNELAHNATPSGQLRS CCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEECCCHHHHHHHHHHHCCCCCCCCCEE VAPGWTFWAVESMIDEIAAASGQDPAQFRIALLDGKGKNDGGAQRLRNTLLAAMGLSGYG CCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCC AKKLPKGEGMGVACVSSQERATASWTACVAHVAVADNGAVTVKKLTVATDVGTQVHPDNI CCCCCCCCCCEEEEECCCCCCHHHHHHHHEEEEEECCCCEEEEEEEEEECCCCEECCCCC RAQVEGAALWGLSLAMYEKATLKDGGIEQTNFDSYTPLRMSQVPEVAIAVIANGEKATGV EEEECCEEEEHHEEEHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCEEEEEEECCCCCCCC GEPAVTVVAPALGNAIYNACGARLRSLPITAEAVKAAMKA CCCCCEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2606906 [H]