Click here to switch to the map view.

The map label for this gene is cydB [H]

Identifier: 146343598

GI number: 146343598

Start: 7096639

End: 7097649

Strand: Direct

Name: cydB [H]

Synonym: BRADO6836

Alternate gene names: 146343598

Gene position: 7096639-7097649 (Clockwise)

Preceding gene: 146343597

Following gene: 146343599

Centisome position: 95.17

GC content: 64.59

Gene sequence:

>1011_bases
ATGAGCGTCGCCGTCGATCTCGCCACGCTTTGGGCCTTCATCATCGCGCTCGCTGTGTTCATCTATGTCGTGATGGACGG
CTTCGATCTCGGCCTCGGCATTCTCTTCCCGCTGTTTCCGGCCAAGCACGACCGCGACACCATCACCAACACGGTCGCGC
CGGTGTGGGACGGCAACGAGACCTGGCTGGTGCTCGGCGGCGGCGGGCTGATGGCGGCGTTTCCGCTCGCTTATTCCATC
CTGCTGCCGGCGCTGTATGCGCCGCTGATCGCGATGCTGGTCGGGCTGATCTTCCGCGGCGTCGCGTTCGAATTCCGCTG
GCGCACGCGCGCCACACGCAATCTCTGGGACATTGCCTTTGCTGGCGGCTCCTGGATCGCGGCGCTGGCACAGGGCATCG
CGCTCGGCGCCATCCTGCAGGGCGTCCATGTCGAGGGCCGGCATTATGCCGGCGGCTGGTGGGACTGGCTGACGCCGTTC
AGCATTCTCACCGGCGTCTCTTTGGTTGCCGGCTACGCCCTTCTTGGCGCGACCTGGCTGATCCTGAAGACCGAGGGCGA
CCTGCGCGACAAAGCCTACCGGATCAGCTGGTTCTTCCTGTTCGCGATGCTGCTCGCGATCGCGGCGGTCAGCCTGGCGA
CGCCGCTGCTCACCAATCAATACGCACATCGCTGGTTTCAGCTGCCGACCGTGATCTTCGCAGCACCGGTGCCGCTCGCC
GTCATCGGGGTCACCGTGCTGATGATGAAGAACCTCGCCCAGAAGCACGACGGCTGGCCATTCTTTCTGGCCCTGGCTCT
CTTCTTGCTCTCCTATGCCGGTCTCGGCATCAGCATCTATCCCTACATCGTGCCGCAGAGCATCACGATCTGGCAGGCGG
CGGCGCCGGAGCGCAGCCAACTGATCATGCTGCCCGGCGTGCTGGTGCTGGTGCCGCTGATTCTCGGCTACACCGCCTGG
GCCTATTGGGTGTTTCGCGGCAAGGTCAGCCACGACGCCGGCTATCATTGA

Upstream 100 bases:

>100_bases
CCGAGCCGCCGCACCCTGGTGAGCCCGGCCTGAGCAGCGCGCAGCCGGTCCGGACCGCCGGCATCACGCCGGCAGCCGGC
GTCGTGCAGGGAGCGGGATC

Downstream 100 bases:

>100_bases
TGCCCACTCCCGAGCCCGCCCCGCTCGCCAAGCGCCTCGCCTGGTTCGTTGCCCTGTGGCTGGCCGGCCTGGCCACCGTC
GGTGCGGTCGCCTTCCTGCT

Product: cytochrome bd ubiquinol oxidase subunit II (cydB, qxtB)

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MSVAVDLATLWAFIIALAVFIYVVMDGFDLGLGILFPLFPAKHDRDTITNTVAPVWDGNETWLVLGGGGLMAAFPLAYSI
LLPALYAPLIAMLVGLIFRGVAFEFRWRTRATRNLWDIAFAGGSWIAALAQGIALGAILQGVHVEGRHYAGGWWDWLTPF
SILTGVSLVAGYALLGATWLILKTEGDLRDKAYRISWFFLFAMLLAIAAVSLATPLLTNQYAHRWFQLPTVIFAAPVPLA
VIGVTVLMMKNLAQKHDGWPFFLALALFLLSYAGLGISIYPYIVPQSITIWQAAAPERSQLIMLPGVLVLVPLILGYTAW
AYWVFRGKVSHDAGYH

Sequences:

>Translated_336_residues
MSVAVDLATLWAFIIALAVFIYVVMDGFDLGLGILFPLFPAKHDRDTITNTVAPVWDGNETWLVLGGGGLMAAFPLAYSI
LLPALYAPLIAMLVGLIFRGVAFEFRWRTRATRNLWDIAFAGGSWIAALAQGIALGAILQGVHVEGRHYAGGWWDWLTPF
SILTGVSLVAGYALLGATWLILKTEGDLRDKAYRISWFFLFAMLLAIAAVSLATPLLTNQYAHRWFQLPTVIFAAPVPLA
VIGVTVLMMKNLAQKHDGWPFFLALALFLLSYAGLGISIYPYIVPQSITIWQAAAPERSQLIMLPGVLVLVPLILGYTAW
AYWVFRGKVSHDAGYH
>Mature_335_residues
SVAVDLATLWAFIIALAVFIYVVMDGFDLGLGILFPLFPAKHDRDTITNTVAPVWDGNETWLVLGGGGLMAAFPLAYSIL
LPALYAPLIAMLVGLIFRGVAFEFRWRTRATRNLWDIAFAGGSWIAALAQGIALGAILQGVHVEGRHYAGGWWDWLTPFS
ILTGVSLVAGYALLGATWLILKTEGDLRDKAYRISWFFLFAMLLAIAAVSLATPLLTNQYAHRWFQLPTVIFAAPVPLAV
IGVTVLMMKNLAQKHDGWPFFLALALFLLSYAGLGISIYPYIVPQSITIWQAAAPERSQLIMLPGVLVLVPLILGYTAWA
YWVFRGKVSHDAGYH

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=368, Percent_Identity=30.7065217391304, Blast_Score=144, Evalue=9e-36,
Organism=Escherichia coli, GI1787213, Length=367, Percent_Identity=29.700272479564, Blast_Score=139, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36911; Mature: 36780

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVAVDLATLWAFIIALAVFIYVVMDGFDLGLGILFPLFPAKHDRDTITNTVAPVWDGNE
CCEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCC
TWLVLGGGGLMAAFPLAYSILLPALYAPLIAMLVGLIFRGVAFEFRWRTRATRNLWDIAF
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHCCHHHEEE
AGGSWIAALAQGIALGAILQGVHVEGRHYAGGWWDWLTPFSILTGVSLVAGYALLGATWL
CCCHHHHHHHHHHHHHHHHHCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEE
ILKTEGDLRDKAYRISWFFLFAMLLAIAAVSLATPLLTNQYAHRWFQLPTVIFAAPVPLA
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
VIGVTVLMMKNLAQKHDGWPFFLALALFLLSYAGLGISIYPYIVPQSITIWQAAAPERSQ
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCCCCCCC
LIMLPGVLVLVPLILGYTAWAYWVFRGKVSHDAGYH
EEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SVAVDLATLWAFIIALAVFIYVVMDGFDLGLGILFPLFPAKHDRDTITNTVAPVWDGNE
CEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCC
TWLVLGGGGLMAAFPLAYSILLPALYAPLIAMLVGLIFRGVAFEFRWRTRATRNLWDIAF
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHCCHHHEEE
AGGSWIAALAQGIALGAILQGVHVEGRHYAGGWWDWLTPFSILTGVSLVAGYALLGATWL
CCCHHHHHHHHHHHHHHHHHCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEE
ILKTEGDLRDKAYRISWFFLFAMLLAIAAVSLATPLLTNQYAHRWFQLPTVIFAAPVPLA
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
VIGVTVLMMKNLAQKHDGWPFFLALALFLLSYAGLGISIYPYIVPQSITIWQAAAPERSQ
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCCCCCCC
LIMLPGVLVLVPLILGYTAWAYWVFRGKVSHDAGYH
EEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]