| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is yeeO [C]
Identifier: 146343533
GI number: 146343533
Start: 7025242
End: 7026690
Strand: Reverse
Name: yeeO [C]
Synonym: BRADO6768
Alternate gene names: 146343533
Gene position: 7026690-7025242 (Counterclockwise)
Preceding gene: 146343534
Following gene: 146343527
Centisome position: 94.23
GC content: 67.56
Gene sequence:
>1449_bases ATGTCCGAGATCGGCCTGGCCGACACTCCGGTCGGCGAGGGGCGGCCGGTGCCGCCCGTGAAGCCGGCGCGGAATGCGGT GGCCGACGGCCCGATCCTGAAGACACTGCTGTCGCTGGCCTGGCCCAACCTCATCGCGAACTCGGCCGGAACCTGCGTCG TCATCGCCGAGACCTCCTATATCGGCCGCCTCGGAATCGAGGCGCTGGCCGCGATGGCCCTGGTCTTCCCGCTTGTGATC CTGACCATGACGATGTCCGGCGGCGCCATGGGCGGCGGCGTCGCCTCGGCGATCGCGCGGGCGCTCGGCGCGGGGGAGAC CGAGCGCGCTTCGACACTCGCTTCGCACGCGCTGCTGATTGCATTGTCGTTCGGTGCGACCTTCCTGGTCGGCATGCTCG TGTTCGGACCCGCTCTGCTGGAAACACTCGGTGGCCGCGGCGCGGTGCTGGACCATGCTGTCGCCTATCTGCAGATCTTC TTCGGCGGCGCGATGCTGCCGTGGCTGATGAACTCGATGGCCGGCATTCTGCGCGGCACCGGCAACATGAAGCTGCCGTC GTTCATGATCCTGAGCTCGGCGATGCTGCAGATCGTGCTCGGCGGCACGCTGAGTCTTGGCCTCGGGCTCGGGATGCGCG GTGTTGCTGCCGGCGCTCTGCTGGCCTTCAGCGTCAGCATCTCCGTGATGGGCTGGTACCTGTTCTCGGGACGTGCGCGG GTGCGGCCGAAGCTGCGGGGGCTGAAGATCAGCTGGGCGATGTTCGCCGACATCCTCAAGGTCGGCGCGGTCGCCTGCTT TTCGCCGCTGCAATCGGTGCTCTCGATCGCGATCTTCACGCACATGCTCGCGGGGTTCGGCACCGCAGTGCTCGCTGGCT ACGGCATTGGCGCCCGGCTGGAGTTCATGATGACGACGGTCGGCTTCTCGATCGGCATGGCCTCGGTGCCGATGGTCGGG ATGGCGATCGGCGGCGGAAACATCGCGCGCGCCCGCCGGATCGCATGGACTGCGGGTCTCGTTTCTTTCTCCGCAATGGG CGTGCTTTCGACGATCATCGCGATCGTTCCGCAGCTGTGGGTCGACATCTTTACCCAGGATGAGAGCGCGCGCAGCGCGG GCCGGCATTATCTGCAGATCGCGGCCCCGATGTACGCCTTCATCGGTCTCGCGATCGCAATGTACTTTTCCTCGCAAGGC GCAGCCAAGGTGATCGGCCCGGTGCTGGCGCAGACGGCGCGGCTCGTCTTCATCGCCGCCGGCGGGAGCTACCTGCTGAG CCATGCCGCGACCGAAGGCCAGTTCTTCACGCTGGCCGCGGTGTCGATGGTCCTGCTCGGCGTGCTGACGCTGACCAGCG TCATGCTGACCCGCTGGGGCCCGCAGCCGACCGCGCTGTCGTTGCACCCGGCCGGCGTCGCGGCCGAGCAAGGCTCCGTT TCGCGGTGA
Upstream 100 bases:
>100_bases ACCCCCCTTGCGTTCGCCGCACGGGGGCACCCTGGCACGATGTGCTAGGAACGAACGACAAGAAGCCGCGACGCGAGCGC GGCGTACGCGGGGAGCGAAC
Downstream 100 bases:
>100_bases GACGTTGTAACCGCGCCCATCTCAGCCGCCCTTCGCGAAGGCGTCCTGCATGGCCCGCGCGCCGAGCTCCATCTGCTGGG CGATGTAGGGTGCGATTTCA
Product: putative cation-driven multidrug efflux pump membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 482; Mature: 481
Protein sequence:
>482_residues MSEIGLADTPVGEGRPVPPVKPARNAVADGPILKTLLSLAWPNLIANSAGTCVVIAETSYIGRLGIEALAAMALVFPLVI LTMTMSGGAMGGGVASAIARALGAGETERASTLASHALLIALSFGATFLVGMLVFGPALLETLGGRGAVLDHAVAYLQIF FGGAMLPWLMNSMAGILRGTGNMKLPSFMILSSAMLQIVLGGTLSLGLGLGMRGVAAGALLAFSVSISVMGWYLFSGRAR VRPKLRGLKISWAMFADILKVGAVACFSPLQSVLSIAIFTHMLAGFGTAVLAGYGIGARLEFMMTTVGFSIGMASVPMVG MAIGGGNIARARRIAWTAGLVSFSAMGVLSTIIAIVPQLWVDIFTQDESARSAGRHYLQIAAPMYAFIGLAIAMYFSSQG AAKVIGPVLAQTARLVFIAAGGSYLLSHAATEGQFFTLAAVSMVLLGVLTLTSVMLTRWGPQPTALSLHPAGVAAEQGSV SR
Sequences:
>Translated_482_residues MSEIGLADTPVGEGRPVPPVKPARNAVADGPILKTLLSLAWPNLIANSAGTCVVIAETSYIGRLGIEALAAMALVFPLVI LTMTMSGGAMGGGVASAIARALGAGETERASTLASHALLIALSFGATFLVGMLVFGPALLETLGGRGAVLDHAVAYLQIF FGGAMLPWLMNSMAGILRGTGNMKLPSFMILSSAMLQIVLGGTLSLGLGLGMRGVAAGALLAFSVSISVMGWYLFSGRAR VRPKLRGLKISWAMFADILKVGAVACFSPLQSVLSIAIFTHMLAGFGTAVLAGYGIGARLEFMMTTVGFSIGMASVPMVG MAIGGGNIARARRIAWTAGLVSFSAMGVLSTIIAIVPQLWVDIFTQDESARSAGRHYLQIAAPMYAFIGLAIAMYFSSQG AAKVIGPVLAQTARLVFIAAGGSYLLSHAATEGQFFTLAAVSMVLLGVLTLTSVMLTRWGPQPTALSLHPAGVAAEQGSV SR >Mature_481_residues SEIGLADTPVGEGRPVPPVKPARNAVADGPILKTLLSLAWPNLIANSAGTCVVIAETSYIGRLGIEALAAMALVFPLVIL TMTMSGGAMGGGVASAIARALGAGETERASTLASHALLIALSFGATFLVGMLVFGPALLETLGGRGAVLDHAVAYLQIFF GGAMLPWLMNSMAGILRGTGNMKLPSFMILSSAMLQIVLGGTLSLGLGLGMRGVAAGALLAFSVSISVMGWYLFSGRARV RPKLRGLKISWAMFADILKVGAVACFSPLQSVLSIAIFTHMLAGFGTAVLAGYGIGARLEFMMTTVGFSIGMASVPMVGM AIGGGNIARARRIAWTAGLVSFSAMGVLSTIIAIVPQLWVDIFTQDESARSAGRHYLQIAAPMYAFIGLAIAMYFSSQGA AKVIGPVLAQTARLVFIAAGGSYLLSHAATEGQFFTLAAVSMVLLGVLTLTSVMLTRWGPQPTALSLHPAGVAAEQGSVS R
Specific function: Unknown
COG id: COG0534
COG function: function code V; Na+-driven multidrug efflux pump
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002528 - InterPro: IPR015522 [H]
Pfam domain/function: PF01554 MatE [H]
EC number: NA
Molecular weight: Translated: 49584; Mature: 49452
Theoretical pI: Translated: 10.47; Mature: 10.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 5.4 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 5.2 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEIGLADTPVGEGRPVPPVKPARNAVADGPILKTLLSLAWPNLIANSAGTCVVIAETSY CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCH IGRLGIEALAAMALVFPLVILTMTMSGGAMGGGVASAIARALGAGETERASTLASHALLI HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH ALSFGATFLVGMLVFGPALLETLGGRGAVLDHAVAYLQIFFGGAMLPWLMNSMAGILRGT HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GNMKLPSFMILSSAMLQIVLGGTLSLGLGLGMRGVAAGALLAFSVSISVMGWYLFSGRAR CCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC VRPKLRGLKISWAMFADILKVGAVACFSPLQSVLSIAIFTHMLAGFGTAVLAGYGIGARL CCHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH EFMMTTVGFSIGMASVPMVGMAIGGGNIARARRIAWTAGLVSFSAMGVLSTIIAIVPQLW HHHHHHHHHHHCHHHCCHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VDIFTQDESARSAGRHYLQIAAPMYAFIGLAIAMYFSSQGAAKVIGPVLAQTARLVFIAA HHHHCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCEEEEEEC GGSYLLSHAATEGQFFTLAAVSMVLLGVLTLTSVMLTRWGPQPTALSLHPAGVAAEQGSV CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCC SR CC >Mature Secondary Structure SEIGLADTPVGEGRPVPPVKPARNAVADGPILKTLLSLAWPNLIANSAGTCVVIAETSY CCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCH IGRLGIEALAAMALVFPLVILTMTMSGGAMGGGVASAIARALGAGETERASTLASHALLI HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH ALSFGATFLVGMLVFGPALLETLGGRGAVLDHAVAYLQIFFGGAMLPWLMNSMAGILRGT HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GNMKLPSFMILSSAMLQIVLGGTLSLGLGLGMRGVAAGALLAFSVSISVMGWYLFSGRAR CCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC VRPKLRGLKISWAMFADILKVGAVACFSPLQSVLSIAIFTHMLAGFGTAVLAGYGIGARL CCHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH EFMMTTVGFSIGMASVPMVGMAIGGGNIARARRIAWTAGLVSFSAMGVLSTIIAIVPQLW HHHHHHHHHHHCHHHCCHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VDIFTQDESARSAGRHYLQIAAPMYAFIGLAIAMYFSSQGAAKVIGPVLAQTARLVFIAA HHHHCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCEEEEEEC GGSYLLSHAATEGQFFTLAAVSMVLLGVLTLTSVMLTRWGPQPTALSLHPAGVAAEQGSV CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCC SR CC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]