| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
Click here to switch to the map view.
The map label for this gene is idnO [H]
Identifier: 146343527
GI number: 146343527
Start: 7021119
End: 7021874
Strand: Reverse
Name: idnO [H]
Synonym: BRADO6762
Alternate gene names: 146343527
Gene position: 7021874-7021119 (Counterclockwise)
Preceding gene: 146343533
Following gene: 146343526
Centisome position: 94.17
GC content: 68.39
Gene sequence:
>756_bases GTGGCGGTCGGCTTGTTCGATCTGACGGGGCGGCGCGCCCTGGTGACCGGGTCCTCGCAAGGCATCGGTCTTGCGCTCGC ACGCGGGCTGGCGGACGCTGGCGCTGAGGTCGTGCTCAACGGCCGCGATGCAACCAAGCTTGCTGCGGCGGCCGCAGCGA TCAAGGGAGCGCGCGTGCTCGCCTTCGACGTCACCGACCACGCCGCGGCGCGCGCGGCCGTCGACCGCTTTGAGGCCGAG ATCGGGCCGATCGACATTCTGGTCAACAATGCCGGCATGCAGCACCGCGCGCCGCTGGAGGAGTTTCCCGAGGACGCGTT CCAGCGCCTGCTGCAGACCAACATCGCCTCTGTGTTCAATGTCGGCCAGGCCTGCGCGCGGCATATGATCGCGCGCCACG CCGGCAAGATCATCAACATCGCCTCCGTGCAGACCTCGCTGGCGCGGCCGTCGATCGCGCCGTACACCGCCTCCAAGGGC GCGGTCGGCAATTTCACCAAGGGCATGGCGACGGATTGGGCCAAGCACGGTCTGCAGGTCAACGCCATCGCGCCGGGCTA CTTCGACACGCCGCTCAACGCGGCGCTGGTCGCGGATCCCGCTTTCTCCGCCTGGCTCGAGAAGCGCACGCCGGCGGGGC GCTGGGGCAAGGTGGAGGAACTCGTCGGCGCCTGCATCTTCCTTGCCTCGGCCGCATCGTCGTTTGTCAATGGCCATGTG CTCTATGTCGACGGCGGCATCACTGCCTCGCTCTGA
Upstream 100 bases:
>100_bases CAGCACGACCGCGGCGCGCGGGCATTCACGTTGACAGGCCTTGTTATCGATAACATAATCGCCCCAGCATGAATGAAAGC CAGCAGGCGGAGGAAGCATC
Downstream 100 bases:
>100_bases GGCACGCTGTCGTCTCATCCCCCGTGTTGCTTGCGGAGTGCCGTCATGAGTCGTGTTGTCGCATTGATCGGCGCAGGCGC CATGGGGGGAGCGATCGGGG
Product: gluconate 5-dehydrogenase
Products: NA
Alternate protein names: 5-keto-D-gluconate 5-reductase [H]
Number of amino acids: Translated: 251; Mature: 250
Protein sequence:
>251_residues MAVGLFDLTGRRALVTGSSQGIGLALARGLADAGAEVVLNGRDATKLAAAAAAIKGARVLAFDVTDHAAARAAVDRFEAE IGPIDILVNNAGMQHRAPLEEFPEDAFQRLLQTNIASVFNVGQACARHMIARHAGKIINIASVQTSLARPSIAPYTASKG AVGNFTKGMATDWAKHGLQVNAIAPGYFDTPLNAALVADPAFSAWLEKRTPAGRWGKVEELVGACIFLASAASSFVNGHV LYVDGGITASL
Sequences:
>Translated_251_residues MAVGLFDLTGRRALVTGSSQGIGLALARGLADAGAEVVLNGRDATKLAAAAAAIKGARVLAFDVTDHAAARAAVDRFEAE IGPIDILVNNAGMQHRAPLEEFPEDAFQRLLQTNIASVFNVGQACARHMIARHAGKIINIASVQTSLARPSIAPYTASKG AVGNFTKGMATDWAKHGLQVNAIAPGYFDTPLNAALVADPAFSAWLEKRTPAGRWGKVEELVGACIFLASAASSFVNGHV LYVDGGITASL >Mature_250_residues AVGLFDLTGRRALVTGSSQGIGLALARGLADAGAEVVLNGRDATKLAAAAAAIKGARVLAFDVTDHAAARAAVDRFEAEI GPIDILVNNAGMQHRAPLEEFPEDAFQRLLQTNIASVFNVGQACARHMIARHAGKIINIASVQTSLARPSIAPYTASKGA VGNFTKGMATDWAKHGLQVNAIAPGYFDTPLNAALVADPAFSAWLEKRTPAGRWGKVEELVGACIFLASAASSFVNGHVL YVDGGITASL
Specific function: Involved in the non-phosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate. Dependent on NADP, almost inactive with NAD [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7705925, Length=244, Percent_Identity=34.4262295081967, Blast_Score=132, Evalue=4e-31, Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=31.9066147859922, Blast_Score=113, Evalue=2e-25, Organism=Homo sapiens, GI40254992, Length=239, Percent_Identity=30.9623430962343, Blast_Score=107, Evalue=9e-24, Organism=Homo sapiens, GI59889578, Length=227, Percent_Identity=33.920704845815, Blast_Score=102, Evalue=3e-22, Organism=Homo sapiens, GI32483357, Length=249, Percent_Identity=28.9156626506024, Blast_Score=102, Evalue=3e-22, Organism=Homo sapiens, GI66933014, Length=245, Percent_Identity=30.6122448979592, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI7706318, Length=203, Percent_Identity=32.0197044334975, Blast_Score=98, Evalue=9e-21, Organism=Homo sapiens, GI20149619, Length=212, Percent_Identity=30.6603773584906, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI10190704, Length=245, Percent_Identity=28.5714285714286, Blast_Score=95, Evalue=6e-20, Organism=Homo sapiens, GI15277342, Length=257, Percent_Identity=29.5719844357977, Blast_Score=88, Evalue=6e-18, Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=28.968253968254, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI7705855, Length=213, Percent_Identity=30.5164319248826, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI4758504, Length=263, Percent_Identity=31.5589353612167, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI4503301, Length=225, Percent_Identity=28.4444444444444, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI226371731, Length=196, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI4557649, Length=195, Percent_Identity=30.7692307692308, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=27.2357723577236, Blast_Score=78, Evalue=6e-15, Organism=Homo sapiens, GI31542939, Length=213, Percent_Identity=27.6995305164319, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI210032110, Length=203, Percent_Identity=25.1231527093596, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI4503817, Length=193, Percent_Identity=26.4248704663212, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI142976729, Length=204, Percent_Identity=26.4705882352941, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI126723191, Length=210, Percent_Identity=27.6190476190476, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI83715985, Length=263, Percent_Identity=30.0380228136882, Blast_Score=68, Evalue=8e-12, Organism=Escherichia coli, GI1790717, Length=247, Percent_Identity=52.2267206477733, Blast_Score=261, Evalue=2e-71, Organism=Escherichia coli, GI1789208, Length=250, Percent_Identity=44.4, Blast_Score=180, Evalue=6e-47, Organism=Escherichia coli, GI87082160, Length=252, Percent_Identity=33.7301587301587, Blast_Score=148, Evalue=3e-37, Organism=Escherichia coli, GI1787335, Length=244, Percent_Identity=35.655737704918, Blast_Score=146, Evalue=1e-36, Organism=Escherichia coli, GI87082100, Length=252, Percent_Identity=36.1111111111111, Blast_Score=124, Evalue=5e-30, Organism=Escherichia coli, GI1788459, Length=240, Percent_Identity=31.6666666666667, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI2367175, Length=250, Percent_Identity=31.6, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI1787905, Length=243, Percent_Identity=31.6872427983539, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1789378, Length=253, Percent_Identity=30.8300395256917, Blast_Score=94, Evalue=6e-21, Organism=Escherichia coli, GI1786812, Length=251, Percent_Identity=27.4900398406374, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI2367365, Length=239, Percent_Identity=31.3807531380753, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1789057, Length=252, Percent_Identity=26.5873015873016, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1787820, Length=180, Percent_Identity=30, Blast_Score=69, Evalue=4e-13, Organism=Caenorhabditis elegans, GI71994604, Length=245, Percent_Identity=33.8775510204082, Blast_Score=119, Evalue=1e-27, Organism=Caenorhabditis elegans, GI25147288, Length=246, Percent_Identity=33.3333333333333, Blast_Score=118, Evalue=3e-27, Organism=Caenorhabditis elegans, GI71994600, Length=246, Percent_Identity=32.9268292682927, Blast_Score=117, Evalue=5e-27, Organism=Caenorhabditis elegans, GI17560676, Length=254, Percent_Identity=29.9212598425197, Blast_Score=111, Evalue=4e-25, Organism=Caenorhabditis elegans, GI17560150, Length=259, Percent_Identity=30.5019305019305, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17555706, Length=249, Percent_Identity=33.3333333333333, Blast_Score=108, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17562906, Length=263, Percent_Identity=30.7984790874525, Blast_Score=107, Evalue=5e-24, Organism=Caenorhabditis elegans, GI115534694, Length=245, Percent_Identity=29.3877551020408, Blast_Score=107, Evalue=5e-24, Organism=Caenorhabditis elegans, GI17559104, Length=257, Percent_Identity=31.5175097276265, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI193204405, Length=261, Percent_Identity=33.3333333333333, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17536651, Length=253, Percent_Identity=32.0158102766798, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17562908, Length=268, Percent_Identity=32.4626865671642, Blast_Score=104, Evalue=5e-23, Organism=Caenorhabditis elegans, GI17562990, Length=259, Percent_Identity=29.7297297297297, Blast_Score=103, Evalue=8e-23, Organism=Caenorhabditis elegans, GI17560332, Length=263, Percent_Identity=30.7984790874525, Blast_Score=100, Evalue=6e-22, Organism=Caenorhabditis elegans, GI17560220, Length=261, Percent_Identity=30.6513409961686, Blast_Score=100, Evalue=9e-22, Organism=Caenorhabditis elegans, GI17536025, Length=253, Percent_Identity=30.8300395256917, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17561402, Length=252, Percent_Identity=29.7619047619048, Blast_Score=98, Evalue=3e-21, Organism=Caenorhabditis elegans, GI72000259, Length=265, Percent_Identity=30.188679245283, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=29.6992481203008, Blast_Score=97, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17538486, Length=269, Percent_Identity=29.368029739777, Blast_Score=97, Evalue=7e-21, Organism=Caenorhabditis elegans, GI17563726, Length=257, Percent_Identity=29.5719844357977, Blast_Score=97, Evalue=8e-21, Organism=Caenorhabditis elegans, GI17562904, Length=266, Percent_Identity=28.9473684210526, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17562910, Length=265, Percent_Identity=28.6792452830189, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17565030, Length=262, Percent_Identity=32.0610687022901, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=29.3233082706767, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17561272, Length=251, Percent_Identity=31.4741035856574, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17544670, Length=266, Percent_Identity=28.5714285714286, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17538182, Length=258, Percent_Identity=32.9457364341085, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17551412, Length=261, Percent_Identity=29.5019157088123, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI193203115, Length=192, Percent_Identity=27.6041666666667, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17564282, Length=190, Percent_Identity=27.8947368421053, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI193203117, Length=194, Percent_Identity=26.8041237113402, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71997402, Length=194, Percent_Identity=29.3814432989691, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI71982365, Length=192, Percent_Identity=28.125, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI32563809, Length=211, Percent_Identity=25.1184834123223, Blast_Score=64, Evalue=8e-11, Organism=Caenorhabditis elegans, GI17508895, Length=193, Percent_Identity=24.8704663212435, Blast_Score=64, Evalue=8e-11, Organism=Caenorhabditis elegans, GI17507613, Length=211, Percent_Identity=25.1184834123223, Blast_Score=64, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=249, Percent_Identity=24.8995983935743, Blast_Score=76, Evalue=6e-15, Organism=Saccharomyces cerevisiae, GI6323882, Length=193, Percent_Identity=29.5336787564767, Blast_Score=75, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6322861, Length=196, Percent_Identity=25.5102040816327, Blast_Score=66, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6319635, Length=265, Percent_Identity=23.0188679245283, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI23397609, Length=247, Percent_Identity=33.6032388663968, Blast_Score=123, Evalue=1e-28, Organism=Drosophila melanogaster, GI24643142, Length=245, Percent_Identity=34.2857142857143, Blast_Score=123, Evalue=1e-28, Organism=Drosophila melanogaster, GI24639444, Length=256, Percent_Identity=34.765625, Blast_Score=122, Evalue=3e-28, Organism=Drosophila melanogaster, GI28571526, Length=242, Percent_Identity=36.3636363636364, Blast_Score=115, Evalue=2e-26, Organism=Drosophila melanogaster, GI21357041, Length=242, Percent_Identity=35.5371900826446, Blast_Score=112, Evalue=2e-25, Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=32, Blast_Score=111, Evalue=4e-25, Organism=Drosophila melanogaster, GI28574402, Length=196, Percent_Identity=34.6938775510204, Blast_Score=103, Evalue=8e-23, Organism=Drosophila melanogaster, GI24584744, Length=196, Percent_Identity=34.6938775510204, Blast_Score=103, Evalue=9e-23, Organism=Drosophila melanogaster, GI21355319, Length=249, Percent_Identity=27.710843373494, Blast_Score=99, Evalue=2e-21, Organism=Drosophila melanogaster, GI161076933, Length=191, Percent_Identity=34.0314136125654, Blast_Score=98, Evalue=5e-21, Organism=Drosophila melanogaster, GI24584748, Length=191, Percent_Identity=34.0314136125654, Blast_Score=98, Evalue=5e-21, Organism=Drosophila melanogaster, GI24644337, Length=181, Percent_Identity=35.9116022099448, Blast_Score=95, Evalue=5e-20, Organism=Drosophila melanogaster, GI17737361, Length=250, Percent_Identity=32, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI24640442, Length=196, Percent_Identity=29.0816326530612, Blast_Score=82, Evalue=2e-16, Organism=Drosophila melanogaster, GI21358495, Length=194, Percent_Identity=29.3814432989691, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI281364892, Length=266, Percent_Identity=24.0601503759398, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24581726, Length=218, Percent_Identity=27.9816513761468, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI116007236, Length=195, Percent_Identity=29.7435897435897, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI24584752, Length=192, Percent_Identity=29.1666666666667, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI21356301, Length=197, Percent_Identity=28.4263959390863, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24641232, Length=197, Percent_Identity=31.9796954314721, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24640492, Length=210, Percent_Identity=24.7619047619048, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI116007238, Length=137, Percent_Identity=32.8467153284672, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI221331218, Length=188, Percent_Identity=29.2553191489362, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24665243, Length=188, Percent_Identity=29.2553191489362, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI21355631, Length=168, Percent_Identity=26.1904761904762, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI28571387, Length=196, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI21357673, Length=195, Percent_Identity=29.7435897435897, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24580925, Length=196, Percent_Identity=26.530612244898, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.69 [H]
Molecular weight: Translated: 26045; Mature: 25914
Theoretical pI: Translated: 8.26; Mature: 8.26
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVGLFDLTGRRALVTGSSQGIGLALARGLADAGAEVVLNGRDATKLAAAAAAIKGARVL CEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCEEE AFDVTDHAAARAAVDRFEAEIGPIDILVNNAGMQHRAPLEEFPEDAFQRLLQTNIASVFN EEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHH VGQACARHMIARHAGKIINIASVQTSLARPSIAPYTASKGAVGNFTKGMATDWAKHGLQV HHHHHHHHHHHHHCCCEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCEEE NAIAPGYFDTPLNAALVADPAFSAWLEKRTPAGRWGKVEELVGACIFLASAASSFVNGHV EEECCCCCCCCCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEE LYVDGGITASL EEECCCEEECC >Mature Secondary Structure AVGLFDLTGRRALVTGSSQGIGLALARGLADAGAEVVLNGRDATKLAAAAAAIKGARVL EEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCEEE AFDVTDHAAARAAVDRFEAEIGPIDILVNNAGMQHRAPLEEFPEDAFQRLLQTNIASVFN EEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHH VGQACARHMIARHAGKIINIASVQTSLARPSIAPYTASKGAVGNFTKGMATDWAKHGLQV HHHHHHHHHHHHHCCCEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCEEE NAIAPGYFDTPLNAALVADPAFSAWLEKRTPAGRWGKVEELVGACIFLASAASSFVNGHV EEECCCCCCCCCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEE LYVDGGITASL EEECCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7751271 [H]