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The map label for this gene is lsrR [H]

Identifier: 146343392

GI number: 146343392

Start: 6873407

End: 6874357

Strand: Reverse

Name: lsrR [H]

Synonym: BRADO6621

Alternate gene names: 146343392

Gene position: 6874357-6873407 (Counterclockwise)

Preceding gene: 146343399

Following gene: 146343391

Centisome position: 92.19

GC content: 69.61

Gene sequence:

>951_bases
ATGGCGGGCAGCGACAGCGACAAATCACGGCTCGACGACGCCGCCCGCGCCGGCTGGCTGTATTTCATCGCCGGCCATAC
CCAGGACGAGATCGCTCGGATGCTGCAGGTCTCGCGCGCCTCGGCGCAGCGGCTGGTGTCGCTGTGCCTTGCCGAGCGGC
TGATCACCTTCCGGCTCGAGCACCCGATCGCCTCCTGCATGGCACTGGCCGCACAGTTGAAGGAGCGCTTCGCGCTGGTG
CATTGCGAGGTGGTGCCGACCGATCCGGCTGCGCCCACGGGCGCCGCCGGCATTGCCGAGCGCTCCGCCAACCTGCTGGA
GACGACGCTGCGCGCCGAGACGCCGGTTATCATCGCGCTGGGCACCGGCCGTGCGGTCCGCGCCGCGGTCGAGCGCGTGT
CGCCGATCGACCGGCCCGAGCATCAGATCGTGTCGCTGGTCGGCAACATCCTGGCCGACGGCTCTGCGAGCTTCTTCGAC
ACGGTGGGCCGGCTGGCCGACCGCACCGGCGCCCGGCATTACCCGATGCCGCTGCCGTTTTTGATGGGCAGCGAGGACGA
GCGCGACCGCATGGTCAGGCTCGACGCGATCGCCAAGGTGAAGGCGGTCGCCGACAAGGCCGACCTCAAGCTGGTCGGCA
TCGGCCAGATGGACCAGAAGGCGCAGATGCATATCGACGGCTTCGTCACCCGCGACGAACTCACCGAGATGATGCGGCTG
GGCGCCATTGGCGAGATCACCGGCTGGGCCTATGACGCCAAGGGGCGGATCATCGACGCCGGCATCAACCGTCGCCTGAC
CAGCATTCCGCCCGACGTGCCGGCGCGCGCGATGACCATCGCGGCGGCGCTGGGACCGGCGAAGATCACGGCCATCCGCG
CCGCGCTGACCGGGCGGCTGATCAACGGCCTGATCACCGATGAGGCGACCGCGCGCGCCATCCTGGCTTGA

Upstream 100 bases:

>100_bases
TCGGTTCCCGCGGCCCGGACGGCCATGTCATAGTGCCGCCGATCCGCGTCGGACAAGGTCCTGCGGGACAGGCATCATCC
GAAGGAGACCGCTCGGCGCC

Downstream 100 bases:

>100_bases
GGATGCCTCACTCTCTCTCGTCATTCCGGGGCATTCGCGCCAGCGAATGAGCCCGGAATCGATAACCCCAGGCTAGCGTT
TCGAGACGCGATGCCCACGA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MAGSDSDKSRLDDAARAGWLYFIAGHTQDEIARMLQVSRASAQRLVSLCLAERLITFRLEHPIASCMALAAQLKERFALV
HCEVVPTDPAAPTGAAGIAERSANLLETTLRAETPVIIALGTGRAVRAAVERVSPIDRPEHQIVSLVGNILADGSASFFD
TVGRLADRTGARHYPMPLPFLMGSEDERDRMVRLDAIAKVKAVADKADLKLVGIGQMDQKAQMHIDGFVTRDELTEMMRL
GAIGEITGWAYDAKGRIIDAGINRRLTSIPPDVPARAMTIAAALGPAKITAIRAALTGRLINGLITDEATARAILA

Sequences:

>Translated_316_residues
MAGSDSDKSRLDDAARAGWLYFIAGHTQDEIARMLQVSRASAQRLVSLCLAERLITFRLEHPIASCMALAAQLKERFALV
HCEVVPTDPAAPTGAAGIAERSANLLETTLRAETPVIIALGTGRAVRAAVERVSPIDRPEHQIVSLVGNILADGSASFFD
TVGRLADRTGARHYPMPLPFLMGSEDERDRMVRLDAIAKVKAVADKADLKLVGIGQMDQKAQMHIDGFVTRDELTEMMRL
GAIGEITGWAYDAKGRIIDAGINRRLTSIPPDVPARAMTIAAALGPAKITAIRAALTGRLINGLITDEATARAILA
>Mature_315_residues
AGSDSDKSRLDDAARAGWLYFIAGHTQDEIARMLQVSRASAQRLVSLCLAERLITFRLEHPIASCMALAAQLKERFALVH
CEVVPTDPAAPTGAAGIAERSANLLETTLRAETPVIIALGTGRAVRAAVERVSPIDRPEHQIVSLVGNILADGSASFFDT
VGRLADRTGARHYPMPLPFLMGSEDERDRMVRLDAIAKVKAVADKADLKLVGIGQMDQKAQMHIDGFVTRDELTEMMRLG
AIGEITGWAYDAKGRIIDAGINRRLTSIPPDVPARAMTIAAALGPAKITAIRAALTGRLINGLITDEATARAILA

Specific function: Regulates transcription of many different genes. In the absence of autoinducer 2 (AI-2), represses transcription of the lsr operon and its own transcription. In the presence of AI-2, lsrR is inactivated by binding phospho-AI-2, leading to the transcriptio

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=313, Percent_Identity=29.7124600638978, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI87082414, Length=323, Percent_Identity=21.671826625387, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 33878; Mature: 33746

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGSDSDKSRLDDAARAGWLYFIAGHTQDEIARMLQVSRASAQRLVSLCLAERLITFRLE
CCCCCCCHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HPIASCMALAAQLKERFALVHCEVVPTDPAAPTGAAGIAERSANLLETTLRAETPVIIAL
HHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
GTGRAVRAAVERVSPIDRPEHQIVSLVGNILADGSASFFDTVGRLADRTGARHYPMPLPF
CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCH
LMGSEDERDRMVRLDAIAKVKAVADKADLKLVGIGQMDQKAQMHIDGFVTRDELTEMMRL
HCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCEEEHHHHHHHHHH
GAIGEITGWAYDAKGRIIDAGINRRLTSIPPDVPARAMTIAAALGPAKITAIRAALTGRL
CCCHHHCCEEECCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
INGLITDEATARAILA
HHHHHCCCHHHHHHCC
>Mature Secondary Structure 
AGSDSDKSRLDDAARAGWLYFIAGHTQDEIARMLQVSRASAQRLVSLCLAERLITFRLE
CCCCCCHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HPIASCMALAAQLKERFALVHCEVVPTDPAAPTGAAGIAERSANLLETTLRAETPVIIAL
HHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
GTGRAVRAAVERVSPIDRPEHQIVSLVGNILADGSASFFDTVGRLADRTGARHYPMPLPF
CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCH
LMGSEDERDRMVRLDAIAKVKAVADKADLKLVGIGQMDQKAQMHIDGFVTRDELTEMMRL
HCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCEEEHHHHHHHHHH
GAIGEITGWAYDAKGRIIDAGINRRLTSIPPDVPARAMTIAAALGPAKITAIRAALTGRL
CCCHHHCCEEECCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
INGLITDEATARAILA
HHHHHCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA