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The map label for this gene is ycjN [C]

Identifier: 146343391

GI number: 146343391

Start: 6871734

End: 6873065

Strand: Reverse

Name: ycjN [C]

Synonym: BRADO6620

Alternate gene names: 146343391

Gene position: 6873065-6871734 (Counterclockwise)

Preceding gene: 146343392

Following gene: 146343390

Centisome position: 92.17

GC content: 63.96

Gene sequence:

>1332_bases
GTGAAGACCATCTTCACTCGCACGCACACGCTTGCCGCCCTGATGGGCGCCGCCGCGCTGCTGACCACTATGCCCGCATT
GGCCGAGACGACCCTGACCATCGCCACCGTCAACAATGGCGACATGATCCGGATGCAGGGCCTGACGGGCGAATTCACCA
AGGCCAATCCCGACATCCAGGTGAAATGGGTGACCCTGGAAGAGAACGTGCTGCGCCAGCGCGTCACCACCGACATCGCC
ACCAAGGGCGGCCAGTTCGACATCCTCACCATCGGCACCTACGAAGTGCCGATCTGGGCCAAGAAGAACTGGCTGGTGCC
GCTCGACAAGCTCGGCGCCGACTACGATGCGAACGACATCCTGCCGAAGATTAAGGACGCGGTGTCCGTCGACGGCAAGC
TCTACGCCGCGCCATTCTACGGCGAGAGCTCGATGGTGATGTACCGCACCGATCTGTTCGACAAGGCCGGGCTGAAGATG
CCGGAGAGCCCGACCTGGGACTTCGTCATCGACGCCGCCAAGAAGCTGACCGACAAGCAGGCCGGCACGTTCGGCATCTG
CCTGCGCGGCAAGGCCGGCTGGGGCGAGAACATGGCGTTCCTGACCGCGATGTCGAACTCGTTCGGCGCGCGCTGGTTCG
ACGAGAAATGGCAGCCGCAGTTCAACACGCCGGAATGGAAGAAGACGCTGTCGACCTATGTCGACCTGATGAAGGAGGCC
GGCCCTCCTGGCGCCAGCTCCAACGGCTTCAACGAGAACCTCGCGCTGTTCAACGCAGGCAAATGCGCGATGTGGATCGA
CGCCACGGTCGCGGCCTCGTTCGTGACCAATCCGAAGGAGTCCAAGGTCGCCGACAAGGTCGGCTTCGCGCTGGCGCCGA
ACACCGGCCTCGGCAAGAACGCCAACTGGCTTTGGGCCTGGAATCTCGCGATTCCCGCCGGCTCGAAGAAGACGGACGCA
GCCGAGAAGTTCATCGCCTGGGCGACCAGCAAGGACTACACCAAGCTCGTCGCCTCGAAGGAGGGCTGGGCCAATGTGCC
GCCGGGCACCCGCACCTCGCTGTACAAGAACGAGGACTATCTGAAGGTCGCGCCGTTCGCGAAGATCACGCTCGCCTCGA
TCGACGCGGCTGATCCGAGCCATCCGACGGTGAAGCCGGTGCCCTATGTCGGCGTGCAATACGCCGCCATTCCGGAATTC
CAGGGCATCGGCACCGCGGTCGGTCAGCAGTTCTCCGCCGCGCTTGCGGGATCGATGACCGTCGATGCGGCGCTGAGCGC
GGCGCAGTCCGCCACCGAACGCGAGATGAAGCGCGCCGGCTACATCAAGTAA

Upstream 100 bases:

>100_bases
CAGCGGGCGCCGACACCTGCTTGACAAAGTCCAACCGTTGTTGTGAACATCAGCCCAGCCCGTGAGCATATGTTCAAAAG
ACACGGGGAGGGAGGAGACC

Downstream 100 bases:

>100_bases
GCGCGCTACAGTATCAGCTCGTCACGGAACTCCTCCCGAGCTGATCACTGGCGGCCATCCCTCCCCACAAGGGATGGCCG
CATTTTCTCTAGGCTTGAAC

Product: putative ABC transporter periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 443

Protein sequence:

>443_residues
MKTIFTRTHTLAALMGAAALLTTMPALAETTLTIATVNNGDMIRMQGLTGEFTKANPDIQVKWVTLEENVLRQRVTTDIA
TKGGQFDILTIGTYEVPIWAKKNWLVPLDKLGADYDANDILPKIKDAVSVDGKLYAAPFYGESSMVMYRTDLFDKAGLKM
PESPTWDFVIDAAKKLTDKQAGTFGICLRGKAGWGENMAFLTAMSNSFGARWFDEKWQPQFNTPEWKKTLSTYVDLMKEA
GPPGASSNGFNENLALFNAGKCAMWIDATVAASFVTNPKESKVADKVGFALAPNTGLGKNANWLWAWNLAIPAGSKKTDA
AEKFIAWATSKDYTKLVASKEGWANVPPGTRTSLYKNEDYLKVAPFAKITLASIDAADPSHPTVKPVPYVGVQYAAIPEF
QGIGTAVGQQFSAALAGSMTVDAALSAAQSATEREMKRAGYIK

Sequences:

>Translated_443_residues
MKTIFTRTHTLAALMGAAALLTTMPALAETTLTIATVNNGDMIRMQGLTGEFTKANPDIQVKWVTLEENVLRQRVTTDIA
TKGGQFDILTIGTYEVPIWAKKNWLVPLDKLGADYDANDILPKIKDAVSVDGKLYAAPFYGESSMVMYRTDLFDKAGLKM
PESPTWDFVIDAAKKLTDKQAGTFGICLRGKAGWGENMAFLTAMSNSFGARWFDEKWQPQFNTPEWKKTLSTYVDLMKEA
GPPGASSNGFNENLALFNAGKCAMWIDATVAASFVTNPKESKVADKVGFALAPNTGLGKNANWLWAWNLAIPAGSKKTDA
AEKFIAWATSKDYTKLVASKEGWANVPPGTRTSLYKNEDYLKVAPFAKITLASIDAADPSHPTVKPVPYVGVQYAAIPEF
QGIGTAVGQQFSAALAGSMTVDAALSAAQSATEREMKRAGYIK
>Mature_443_residues
MKTIFTRTHTLAALMGAAALLTTMPALAETTLTIATVNNGDMIRMQGLTGEFTKANPDIQVKWVTLEENVLRQRVTTDIA
TKGGQFDILTIGTYEVPIWAKKNWLVPLDKLGADYDANDILPKIKDAVSVDGKLYAAPFYGESSMVMYRTDLFDKAGLKM
PESPTWDFVIDAAKKLTDKQAGTFGICLRGKAGWGENMAFLTAMSNSFGARWFDEKWQPQFNTPEWKKTLSTYVDLMKEA
GPPGASSNGFNENLALFNAGKCAMWIDATVAASFVTNPKESKVADKVGFALAPNTGLGKNANWLWAWNLAIPAGSKKTDA
AEKFIAWATSKDYTKLVASKEGWANVPPGTRTSLYKNEDYLKVAPFAKITLASIDAADPSHPTVKPVPYVGVQYAAIPEF
QGIGTAVGQQFSAALAGSMTVDAALSAAQSATEREMKRAGYIK

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787569, Length=345, Percent_Identity=26.0869565217391, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 48035; Mature: 48035

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTIFTRTHTLAALMGAAALLTTMPALAETTLTIATVNNGDMIRMQGLTGEFTKANPDIQ
CCEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEECCCCCCCCCCCCEE
VKWVTLEENVLRQRVTTDIATKGGQFDILTIGTYEVPIWAKKNWLVPLDKLGADYDANDI
EEEEEECHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEEECCCCCCCHHHCCCCCCCHHH
LPKIKDAVSVDGKLYAAPFYGESSMVMYRTDLFDKAGLKMPESPTWDFVIDAAKKLTDKQ
HHHHHHHHCCCCEEEEEEEECCCCEEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHCC
AGTFGICLRGKAGWGENMAFLTAMSNSFGARWFDEKWQPQFNTPEWKKTLSTYVDLMKEA
CCEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
GPPGASSNGFNENLALFNAGKCAMWIDATVAASFVTNPKESKVADKVGFALAPNTGLGKN
CCCCCCCCCCCCCEEEEECCCEEEEEEHHHHHHHHCCCCHHHHHHHHCEEECCCCCCCCC
ANWLWAWNLAIPAGSKKTDAAEKFIAWATSKDYTKLVASKEGWANVPPGTRTSLYKNEDY
CCEEEEEEEEECCCCCCCHHHHHHEEECCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCC
LKVAPFAKITLASIDAADPSHPTVKPVPYVGVQYAAIPEFQGIGTAVGQQFSAALAGSMT
EEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCHH
VDAALSAAQSATEREMKRAGYIK
HHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKTIFTRTHTLAALMGAAALLTTMPALAETTLTIATVNNGDMIRMQGLTGEFTKANPDIQ
CCEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEECCCCCCCCCCCCEE
VKWVTLEENVLRQRVTTDIATKGGQFDILTIGTYEVPIWAKKNWLVPLDKLGADYDANDI
EEEEEECHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEEECCCCCCCHHHCCCCCCCHHH
LPKIKDAVSVDGKLYAAPFYGESSMVMYRTDLFDKAGLKMPESPTWDFVIDAAKKLTDKQ
HHHHHHHHCCCCEEEEEEEECCCCEEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHCC
AGTFGICLRGKAGWGENMAFLTAMSNSFGARWFDEKWQPQFNTPEWKKTLSTYVDLMKEA
CCEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
GPPGASSNGFNENLALFNAGKCAMWIDATVAASFVTNPKESKVADKVGFALAPNTGLGKN
CCCCCCCCCCCCCEEEEECCCEEEEEEHHHHHHHHCCCCHHHHHHHHCEEECCCCCCCCC
ANWLWAWNLAIPAGSKKTDAAEKFIAWATSKDYTKLVASKEGWANVPPGTRTSLYKNEDY
CCEEEEEEEEECCCCCCCHHHHHHEEECCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCC
LKVAPFAKITLASIDAADPSHPTVKPVPYVGVQYAAIPEFQGIGTAVGQQFSAALAGSMT
EEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCHH
VDAALSAAQSATEREMKRAGYIK
HHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]