| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is gltX1 [H]
Identifier: 146343277
GI number: 146343277
Start: 6746156
End: 6747025
Strand: Reverse
Name: gltX1 [H]
Synonym: BRADO6498
Alternate gene names: 146343277
Gene position: 6747025-6746156 (Counterclockwise)
Preceding gene: 146343284
Following gene: 146343276
Centisome position: 90.48
GC content: 66.55
Gene sequence:
>870_bases ATGCCACCCGTTTTCCGATTTGCCCCCAGCCCCAACGGCTATCTCCATCTCGGCCACGCCTATTCGGCGCTGCTGAACGT CCAGCGTGCGCGGGAGACCGGTGGCCGCCTGCTGTTGCGGATCGAGGACATCGACCCGACGCGCTGCCGGCCCGAATATG AGCAGGCGATCACCGAGGATCTCGCCTGGCTCGGCATCGCCTGGGAGCAGCCGGTGCGGCGGCAGTCGCTGCATCTCGCT GCGTATGGCGCTGCGCTGGAGCGGCTGCAGGATATGGGGCTCGTCTATCCGAGCTTCGAGAGCCGGGCCGAAATCGCGCG GCTGGTCGCGCAGCGAGGTGTCGAGGGCAATTGGCCGCAGGATCCTGATGGGGCGCCGCTCTATCCCGGTGCGGCAAAGG CAATGTCTGCAACACGCCGTGCAGAACTGATGAGCAGCGGCCTGCCCTATGCGCTGCGACTCGATATGGAAGCGGCGGTC GTGCGCGCCGGAGGGCTGAGCTGGGTCGAGGTCGGCTGTGGGCCGAACGGCGAGAGCGGGACGATCGAGGCGACCCCGGC AGTCTGGGGCGACGTCATCCTGGCGCGCAAGGAAACACCCACCAGCTACCATCTGTCCGTGGTCGTGGACGACGCGCTGC AAGGCGTGACCGAGGTGGTGCGTGGACAGGATCTGTTTCATGCGACCAGCGTGCACCGGCTGCTGCAGGTCCTGCTCGGC CTGCCGGCGCCGGCCTATCGGCACCACCAACTGATTCGCGACGATATGGGCCACAAGCTGTCCAAATCCACGCAAGCGAC GGCTTTGCGCACATTGCGCGCCGAAGGCGTCTCGCCGGCGGAAATCCGACACAGGATCGGCTTGGTATAG
Upstream 100 bases:
>100_bases GCGCGGGCTTGACCCGCGCATCCATCTCGGATCGAACGTTTTCGCAAAGGAGCATGAGTGTCGGATCACGCGAGCTCAAG TCCTGCAAGGACGAACTGAC
Downstream 100 bases:
>100_bases CCGTGTCCTGCCGCAAGTCCCGCTGTCTCCGAATGTTTCCGGCGGGGACAACCTCCGGGGCATCGTGACACTCGGAAACG ACCGTGCCATGCTGACCAAT
Product: glutamyl-Q tRNA(Asp) synthetase
Products: NA
Alternate protein names: Glutamate--tRNA ligase 1; GluRS 1 [H]
Number of amino acids: Translated: 289; Mature: 288
Protein sequence:
>289_residues MPPVFRFAPSPNGYLHLGHAYSALLNVQRARETGGRLLLRIEDIDPTRCRPEYEQAITEDLAWLGIAWEQPVRRQSLHLA AYGAALERLQDMGLVYPSFESRAEIARLVAQRGVEGNWPQDPDGAPLYPGAAKAMSATRRAELMSSGLPYALRLDMEAAV VRAGGLSWVEVGCGPNGESGTIEATPAVWGDVILARKETPTSYHLSVVVDDALQGVTEVVRGQDLFHATSVHRLLQVLLG LPAPAYRHHQLIRDDMGHKLSKSTQATALRTLRAEGVSPAEIRHRIGLV
Sequences:
>Translated_289_residues MPPVFRFAPSPNGYLHLGHAYSALLNVQRARETGGRLLLRIEDIDPTRCRPEYEQAITEDLAWLGIAWEQPVRRQSLHLA AYGAALERLQDMGLVYPSFESRAEIARLVAQRGVEGNWPQDPDGAPLYPGAAKAMSATRRAELMSSGLPYALRLDMEAAV VRAGGLSWVEVGCGPNGESGTIEATPAVWGDVILARKETPTSYHLSVVVDDALQGVTEVVRGQDLFHATSVHRLLQVLLG LPAPAYRHHQLIRDDMGHKLSKSTQATALRTLRAEGVSPAEIRHRIGLV >Mature_288_residues PPVFRFAPSPNGYLHLGHAYSALLNVQRARETGGRLLLRIEDIDPTRCRPEYEQAITEDLAWLGIAWEQPVRRQSLHLAA YGAALERLQDMGLVYPSFESRAEIARLVAQRGVEGNWPQDPDGAPLYPGAAKAMSATRRAELMSSGLPYALRLDMEAAVV RAGGLSWVEVGCGPNGESGTIEATPAVWGDVILARKETPTSYHLSVVVDDALQGVTEVVRGQDLFHATSVHRLLQVLLGL PAPAYRHHQLIRDDMGHKLSKSTQATALRTLRAEGVSPAEIRHRIGLV
Specific function: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction:glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) [H]
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI134288884, Length=284, Percent_Identity=32.0422535211268, Blast_Score=114, Evalue=1e-25, Organism=Escherichia coli, GI1788743, Length=276, Percent_Identity=30.7971014492754, Blast_Score=121, Evalue=7e-29, Organism=Escherichia coli, GI226510925, Length=264, Percent_Identity=34.469696969697, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1786895, Length=91, Percent_Identity=40.6593406593407, Blast_Score=75, Evalue=5e-15, Organism=Caenorhabditis elegans, GI71993394, Length=267, Percent_Identity=28.0898876404494, Blast_Score=91, Evalue=9e-19, Organism=Saccharomyces cerevisiae, GI6324540, Length=279, Percent_Identity=28.673835125448, Blast_Score=112, Evalue=5e-26, Organism=Saccharomyces cerevisiae, GI6321192, Length=226, Percent_Identity=27.8761061946903, Blast_Score=73, Evalue=6e-14, Organism=Drosophila melanogaster, GI24665321, Length=285, Percent_Identity=31.2280701754386, Blast_Score=119, Evalue=2e-27,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008925 - InterPro: IPR020751 - InterPro: IPR001412 - InterPro: IPR004527 - InterPro: IPR000924 - InterPro: IPR020061 - InterPro: IPR020058 - InterPro: IPR014729 [H]
Pfam domain/function: PF00749 tRNA-synt_1c [H]
EC number: =6.1.1.17 [H]
Molecular weight: Translated: 31629; Mature: 31497
Theoretical pI: Translated: 7.08; Mature: 7.08
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPVFRFAPSPNGYLHLGHAYSALLNVQRARETGGRLLLRIEDIDPTRCRPEYEQAITED CCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHH LAWLGIAWEQPVRRQSLHLAAYGAALERLQDMGLVYPSFESRAEIARLVAQRGVEGNWPQ HHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCC DPDGAPLYPGAAKAMSATRRAELMSSGLPYALRLDMEAAVVRAGGLSWVEVGCGPNGESG CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCEEEEECCCCCCCCC TIEATPAVWGDVILARKETPTSYHLSVVVDDALQGVTEVVRGQDLFHATSVHRLLQVLLG EEEECCHHHHHEEEEECCCCCCEEEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC LPAPAYRHHQLIRDDMGHKLSKSTQATALRTLRAEGVSPAEIRHRIGLV CCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC >Mature Secondary Structure PPVFRFAPSPNGYLHLGHAYSALLNVQRARETGGRLLLRIEDIDPTRCRPEYEQAITED CCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHH LAWLGIAWEQPVRRQSLHLAAYGAALERLQDMGLVYPSFESRAEIARLVAQRGVEGNWPQ HHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCC DPDGAPLYPGAAKAMSATRRAELMSSGLPYALRLDMEAAVVRAGGLSWVEVGCGPNGESG CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCEEEEECCCCCCCCC TIEATPAVWGDVILARKETPTSYHLSVVVDDALQGVTEVVRGQDLFHATSVHRLLQVLLG EEEECCHHHHHEEEEECCCCCCEEEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC LPAPAYRHHQLIRDDMGHKLSKSTQATALRTLRAEGVSPAEIRHRIGLV CCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA