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The map label for this gene is yciL [C]

Identifier: 146342900

GI number: 146342900

Start: 6307478

End: 6309529

Strand: Reverse

Name: yciL [C]

Synonym: BRADO6081

Alternate gene names: 146342900

Gene position: 6309529-6307478 (Counterclockwise)

Preceding gene: 146342902

Following gene: 146342899

Centisome position: 84.62

GC content: 71.44

Gene sequence:

>2052_bases
ATGCCCCGCACCACCGACAAAGACAACGATTCCCGCGGCCGCCGCGGCGGCGCCCCACGGGGGCGGTCCGAGGGCGGCAA
GGGGTCCAAGGCGGGCCGCTCGGGCGCCGCGCGCGGGCCGGAGAAGAAATTCGCCAAGCGCTCGTTCGACGACGGCCGCG
CGCCGCGCCGCCGCGACGACGGCGATGCGCCTCGCAAATCCTATGGCGGCAAGCCGCGCTTCAACCGTGACGAGCGGCCG
CGCGGCGACCGACCGTATGCGGCGCGGTCGGGCGAGGGCGAGAAACGCGCCTTCAAGCCGCGCGGCGATCGGCCGAAGTT
CGACCGCGACGATCGCGGCGGCGAGAAGCGTCCGTACACGCCGCGTGGCAATCGCGACGATGCGCGGCCGGCTGGGCGGT
CGTCGGAGCGCAAGTTCGGCGAGCGCAAGCCTTACGCGCCGCGGGAGCGCGATGGCGAGAAGCGGCCGTATACGCCGCGC
GGCGAAGGTGCGCGGGATCGCGGCGACCGGCCGGCGCGCAGCTTCGGAGACCGGCCTTCGCGCGGAGGCGATCGGCCGGA
ACGCAAGTTCGGCGGCGAACGCAAATTCTCGCGCGGTGCCGAAGGTGATCGCGGCGAGCGCAAGTTCGGTGGCGGCGCGC
GTGGACCGCGCAAGGAGTTCGGTGATCGTCCGCCGCGCGGGGAGAGCAAGCCCTGGCAGAAGCGCGGGGCGGAAGGCGAG
CGTGCTGAACGCGGCCCGCGCGCGACGCGCGAGGGCGGACGCAGCTATGATCGTCCGCGCTCCGACCGCACGCGAGAGGA
TCGTCCGAAGTTCGACCGGCCGAAATTCGATCGTTCGCGCGATCGCGGCGACGATCGAGGCTTTAACAAGCCGCGTCGTC
GTCCCGAGGGCCCTACCGACTGGCAGGAGCATCCGCGCAGCGAACGCCGCGAGTTCGGCGACCGGCCGCGCCGTGACAAT
GAGAACGACGGCGAGATCTTTGCCAGGCGCCCGGCGTTCGGCGGCCGTGGTCCGTATCGCGCGCGCAAGCCAGAGCCAGA
GAAGCGCAGCAAGCGTGTGGTGCCCGACGAGGCGCCGAAGCCGCGCAAGACCGGAGAGCGCATCGCCAAGGTGCTGGCGC
GTGCCGGCCTCGCCTCGCGCCGCGACGCCGAGGAGATGGTGACGCAGGGCCGCGTCAGCGTGAACGGCCGGATCATCAAT
TCGCCGGCGCTCGACGTCACCGAGAACGATGAGATCAAAGTCGACGGCGCGCCGCTGCCGGAGCGCGAGCGGACGCGGCT
GTTTCTGTACCACAAGCCGCGCGGGCTGATGACGACGCACAGCGACCCCGAGGGCCGCCCGACGGTGTTCGACAATCTGC
CCGAGGGCCTGCCGCGGCTGATCTCGATCGGCCGGCTCGACTTCAACACCGAGGGTCTGCTGCTGCTCACCAATGATGGT
GGCCTCGCGCGCGTGCTGGAACTGCCGGACACCGGCTGGACCCGGCGCTATCGCGTGCGTGCGCATGGCGAGATCACGCA
AGGACAGCTCGATCAGCTTGCCGCAGGCGTCGAGGTCGACGGCGTGAAGTACGGGCCGATCGAGGCGACGCTCGAGCGCG
ACCAGGGCGCCAATGTCTGGCTGGTCGTCGCGATCCGCGAAGGCAAGAACCGCGAGGTGCGCAACGTGCTGGCACATCTC
GGCCTCGAGGTGAACCGCCTGATCCGCGTCTCCTACGGCCCATTCCAACTCCTGGAGCTGCCCGAGGGCGAGGTGCAGGA
GGTCAAGACGCGGGTGCTGCGCGAGCAGCTCGGCGAGAAGGTCATCGCGCAGTCCGGCGCCGATCTCGGTCCGGCGGGCA
GTAGCAATCGCGAGCCGCTGCCGGATCCGAAGCCCAAGCCGAAGCGCGAGATCGTCGCCGACCGCAAGGGCCGCCGCGTG
CTGGTCCAGCGTACCGGCAGCGAGGAGGCCCGCGAGCGCCACGAGGCTGAGGCCCGCTTCCCCGGCCCGCCCCGGCGGCC
GAAGCGCGGCTATCACGGCAAGCGCGATATCAGCCCGCGGGACGACGAGTAG

Upstream 100 bases:

>100_bases
GATCGCCCTTCAGCACAACCGGACCCCATTTTCGCGTGACATGCGCTGCTTCCGAAGCGCGCGTATCACCCAGCGTCCTG
CCCCCCGAAGTGAGACCTTC

Downstream 100 bases:

>100_bases
GGCGATGCGGCCGGCTGCGAACTTGTCAGCTACGGGTCTCGTCACCGACGCTTGGACGGTCTCTCCGCTCCCTCCCCCCT
TGTGGGGGAGGGCTGGGGAG

Product: putative pseudouridine synthase, Rsu:RNA-binding S4:pseudouridine synthase

Products: NA

Alternate protein names: RNA pseudouridylate synthase; RNA-uridine isomerase [H]

Number of amino acids: Translated: 683; Mature: 682

Protein sequence:

>683_residues
MPRTTDKDNDSRGRRGGAPRGRSEGGKGSKAGRSGAARGPEKKFAKRSFDDGRAPRRRDDGDAPRKSYGGKPRFNRDERP
RGDRPYAARSGEGEKRAFKPRGDRPKFDRDDRGGEKRPYTPRGNRDDARPAGRSSERKFGERKPYAPRERDGEKRPYTPR
GEGARDRGDRPARSFGDRPSRGGDRPERKFGGERKFSRGAEGDRGERKFGGGARGPRKEFGDRPPRGESKPWQKRGAEGE
RAERGPRATREGGRSYDRPRSDRTREDRPKFDRPKFDRSRDRGDDRGFNKPRRRPEGPTDWQEHPRSERREFGDRPRRDN
ENDGEIFARRPAFGGRGPYRARKPEPEKRSKRVVPDEAPKPRKTGERIAKVLARAGLASRRDAEEMVTQGRVSVNGRIIN
SPALDVTENDEIKVDGAPLPERERTRLFLYHKPRGLMTTHSDPEGRPTVFDNLPEGLPRLISIGRLDFNTEGLLLLTNDG
GLARVLELPDTGWTRRYRVRAHGEITQGQLDQLAAGVEVDGVKYGPIEATLERDQGANVWLVVAIREGKNREVRNVLAHL
GLEVNRLIRVSYGPFQLLELPEGEVQEVKTRVLREQLGEKVIAQSGADLGPAGSSNREPLPDPKPKPKREIVADRKGRRV
LVQRTGSEEARERHEAEARFPGPPRRPKRGYHGKRDISPRDDE

Sequences:

>Translated_683_residues
MPRTTDKDNDSRGRRGGAPRGRSEGGKGSKAGRSGAARGPEKKFAKRSFDDGRAPRRRDDGDAPRKSYGGKPRFNRDERP
RGDRPYAARSGEGEKRAFKPRGDRPKFDRDDRGGEKRPYTPRGNRDDARPAGRSSERKFGERKPYAPRERDGEKRPYTPR
GEGARDRGDRPARSFGDRPSRGGDRPERKFGGERKFSRGAEGDRGERKFGGGARGPRKEFGDRPPRGESKPWQKRGAEGE
RAERGPRATREGGRSYDRPRSDRTREDRPKFDRPKFDRSRDRGDDRGFNKPRRRPEGPTDWQEHPRSERREFGDRPRRDN
ENDGEIFARRPAFGGRGPYRARKPEPEKRSKRVVPDEAPKPRKTGERIAKVLARAGLASRRDAEEMVTQGRVSVNGRIIN
SPALDVTENDEIKVDGAPLPERERTRLFLYHKPRGLMTTHSDPEGRPTVFDNLPEGLPRLISIGRLDFNTEGLLLLTNDG
GLARVLELPDTGWTRRYRVRAHGEITQGQLDQLAAGVEVDGVKYGPIEATLERDQGANVWLVVAIREGKNREVRNVLAHL
GLEVNRLIRVSYGPFQLLELPEGEVQEVKTRVLREQLGEKVIAQSGADLGPAGSSNREPLPDPKPKPKREIVADRKGRRV
LVQRTGSEEARERHEAEARFPGPPRRPKRGYHGKRDISPRDDE
>Mature_682_residues
PRTTDKDNDSRGRRGGAPRGRSEGGKGSKAGRSGAARGPEKKFAKRSFDDGRAPRRRDDGDAPRKSYGGKPRFNRDERPR
GDRPYAARSGEGEKRAFKPRGDRPKFDRDDRGGEKRPYTPRGNRDDARPAGRSSERKFGERKPYAPRERDGEKRPYTPRG
EGARDRGDRPARSFGDRPSRGGDRPERKFGGERKFSRGAEGDRGERKFGGGARGPRKEFGDRPPRGESKPWQKRGAEGER
AERGPRATREGGRSYDRPRSDRTREDRPKFDRPKFDRSRDRGDDRGFNKPRRRPEGPTDWQEHPRSERREFGDRPRRDNE
NDGEIFARRPAFGGRGPYRARKPEPEKRSKRVVPDEAPKPRKTGERIAKVLARAGLASRRDAEEMVTQGRVSVNGRIINS
PALDVTENDEIKVDGAPLPERERTRLFLYHKPRGLMTTHSDPEGRPTVFDNLPEGLPRLISIGRLDFNTEGLLLLTNDGG
LARVLELPDTGWTRRYRVRAHGEITQGQLDQLAAGVEVDGVKYGPIEATLERDQGANVWLVVAIREGKNREVRNVLAHLG
LEVNRLIRVSYGPFQLLELPEGEVQEVKTRVLREQLGEKVIAQSGADLGPAGSSNREPLPDPKPKPKREIVADRKGRRVL
VQRTGSEEARERHEAEARFPGPPRRPKRGYHGKRDISPRDDE

Specific function: Unknown

COG id: COG1187

COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787524, Length=244, Percent_Identity=41.3934426229508, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI87081838, Length=184, Percent_Identity=34.2391304347826, Blast_Score=86, Evalue=9e-18,
Organism=Escherichia coli, GI1790453, Length=274, Percent_Identity=28.4671532846715, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1788510, Length=204, Percent_Identity=30.3921568627451, Blast_Score=75, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006145
- InterPro:   IPR018496
- InterPro:   IPR002942 [H]

Pfam domain/function: PF00849 PseudoU_synth_2; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 77298; Mature: 77167

Theoretical pI: Translated: 11.25; Mature: 11.25

Prosite motif: PS50889 S4 ; PS01149 PSI_RSU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRTTDKDNDSRGRRGGAPRGRSEGGKGSKAGRSGAARGPEKKFAKRSFDDGRAPRRRDD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
GDAPRKSYGGKPRFNRDERPRGDRPYAARSGEGEKRAFKPRGDRPKFDRDDRGGEKRPYT
CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCC
PRGNRDDARPAGRSSERKFGERKPYAPRERDGEKRPYTPRGEGARDRGDRPARSFGDRPS
CCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC
RGGDRPERKFGGERKFSRGAEGDRGERKFGGGARGPRKEFGDRPPRGESKPWQKRGAEGE
CCCCCCHHHCCCCHHHHCCCCCCCCCHHCCCCCCCCHHHHCCCCCCCCCCCHHHCCCCCC
RAERGPRATREGGRSYDRPRSDRTREDRPKFDRPKFDRSRDRGDDRGFNKPRRRPEGPTD
HHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCC
WQEHPRSERREFGDRPRRDNENDGEIFARRPAFGGRGPYRARKPEPEKRSKRVVPDEAPK
HHHCCHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCCCCC
PRKTGERIAKVLARAGLASRRDAEEMVTQGRVSVNGRIINSPALDVTENDEIKVDGAPLP
CHHHHHHHHHHHHHHCCHHCCCHHHHHHCCCEEECCEEECCCCCCCCCCCCEEECCCCCC
ERERTRLFLYHKPRGLMTTHSDPEGRPTVFDNLPEGLPRLISIGRLDFNTEGLLLLTNDG
CCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCC
GLARVLELPDTGWTRRYRVRAHGEITQGQLDQLAAGVEVDGVKYGPIEATLERDQGANVW
CEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHCCCEECCEEECCCHHHHHCCCCCCEE
LVVAIREGKNREVRNVLAHLGLEVNRLIRVSYGPFQLLELPEGEVQEVKTRVLREQLGEK
EEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHH
VIAQSGADLGPAGSSNREPLPDPKPKPKREIVADRKGRRVLVQRTGSEEARERHEAEARF
HHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCC
PGPPRRPKRGYHGKRDISPRDDE
CCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PRTTDKDNDSRGRRGGAPRGRSEGGKGSKAGRSGAARGPEKKFAKRSFDDGRAPRRRDD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
GDAPRKSYGGKPRFNRDERPRGDRPYAARSGEGEKRAFKPRGDRPKFDRDDRGGEKRPYT
CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCC
PRGNRDDARPAGRSSERKFGERKPYAPRERDGEKRPYTPRGEGARDRGDRPARSFGDRPS
CCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC
RGGDRPERKFGGERKFSRGAEGDRGERKFGGGARGPRKEFGDRPPRGESKPWQKRGAEGE
CCCCCCHHHCCCCHHHHCCCCCCCCCHHCCCCCCCCHHHHCCCCCCCCCCCHHHCCCCCC
RAERGPRATREGGRSYDRPRSDRTREDRPKFDRPKFDRSRDRGDDRGFNKPRRRPEGPTD
HHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCC
WQEHPRSERREFGDRPRRDNENDGEIFARRPAFGGRGPYRARKPEPEKRSKRVVPDEAPK
HHHCCHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCCCCC
PRKTGERIAKVLARAGLASRRDAEEMVTQGRVSVNGRIINSPALDVTENDEIKVDGAPLP
CHHHHHHHHHHHHHHCCHHCCCHHHHHHCCCEEECCEEECCCCCCCCCCCCEEECCCCCC
ERERTRLFLYHKPRGLMTTHSDPEGRPTVFDNLPEGLPRLISIGRLDFNTEGLLLLTNDG
CCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCC
GLARVLELPDTGWTRRYRVRAHGEITQGQLDQLAAGVEVDGVKYGPIEATLERDQGANVW
CEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHCCCEECCEEECCCHHHHHCCCCCCEE
LVVAIREGKNREVRNVLAHLGLEVNRLIRVSYGPFQLLELPEGEVQEVKTRVLREQLGEK
EEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHH
VIAQSGADLGPAGSSNREPLPDPKPKPKREIVADRKGRRVLVQRTGSEEARERHEAEARF
HHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCC
PGPPRRPKRGYHGKRDISPRDDE
CCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA