| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is 146342891
Identifier: 146342891
GI number: 146342891
Start: 6297623
End: 6299002
Strand: Direct
Name: 146342891
Synonym: BRADO6071
Alternate gene names: NA
Gene position: 6297623-6299002 (Clockwise)
Preceding gene: 146342890
Following gene: 146342892
Centisome position: 84.46
GC content: 68.19
Gene sequence:
>1380_bases ATGAGCACAATCACCTTCGCCCGCCGCCTCGCCTGCGTTCTCAGCGTCGCCGCCGCGGCGCTGACGCTCGCCCCGGCCGC CCATGCCGCGACCAAGATCCAGCGGCTGGTATCGCCCGGCGGCATCGAGGCCTGGTTCGTGCAGGACGCCACCGTGCCCC TGATCGCGATGGAATACGCCTTCGAAGGCGGCGCCTCGCAGGACCCCGCGGGCAAGCCCGGCGTCGGAAATCTCGTCGCC GACCTGCTCGACGAGGGCTCCGGAGATCTCGATTCCAAGACCTTCCATGAGCGGCTCGACCGCCGCGCCATCGAGCTCTC CTTCCAGGTGTCGCGCGATCAGTTCCGCGGCTCCTTGCGCATGCTGCGCGACACCAAAGACGAGGCGTTCGATCTGCTGC GCACCGCGCTGACCTCGCCGCATTTCGACAGCACCGACGTCGAGCGCATCCGCTCGCAGGTGATATCGGGCCTGCGCCGC GAGACGACGAATCCGAGCTCGCTGGCGGGACGCAAGTTCCTCGAGCTGGCCTTCCCCAACCACCCCTATGGCCGTCCAGC CAACGGCACGTTGGAGACCGTGCCGACCATCACCGTCGACGACCTCAAATCCTATGTCGGCCGCGTGCTCGCCAAGGACA CGCTGAAGGTCGCCGTCGTCGGTGACGTCGATCCGGCCACGCTCGGCAAGCTCCTGGACCAGACCTTCGGCGCGCTGCCG GCCAAGGCCCAGCTGACGCCGGTTCCCGACATCGTCGCCACCAAGCCGCCGCAGCGCGTGCTCGTGCCGCTCGACGTGCC GCAGACCGTGATCACCTTCGGCGGCCCCGGCATCCGCCGTCACGACCCCAACTTCATGGCCGCCTACGTCGTCAACCACA TCCTTGGCGGCGGCGGCCTGTCGTCACGGCTGTACAAGGAGGTCCGCGAGAAGCGCGGCCTCGCCTACTCCGTCTATGAC GCGCTGCTGTGGATGGACCATTCGGCGCTGTTCATCGGCAACACCGCGACCCGCTTCGACCGCGCCGGCGAGACCATCGC CGCCGTCGAGCAGGAGATCCGCCGCATCGCCGAGGAAGGCCCGACCCAGCAGGAGCTCGACGAAGCCAAATCCTACATCA ACGGCTCGCAGATGCTGGCGCTCGACACCTCCTCCAAGCTGGCGCAGGCGATGCTGCAATACCAGCTCGACAAGATGCCG ATCGACTACATCGAGAAGCGCAGCGAGATCGTCAACGCCGTGACGCTGGACGACGCGAAGAAGGCGGCCAAGCAGCTCTG GAGCCAGGGCCTGCTGACGGCCGTCGTCGGCCGCACCCCGCAGGCCGCGGCGGAGCCGGGGCAGGCACCGGCCACGGCAC CGACGACGAAGACGAACTGA
Upstream 100 bases:
>100_bases AAGTCCGCGCCGCCGCGCAGAAATGGCTCGACAAGAAGCGCTCGGTCACGGGCTATCTGATCAAGGACAATGCGGCCAAG CGCGAGGAGAAGCGGTCGTG
Downstream 100 bases:
>100_bases GGAAGCAGCGTCGCTGCTTCTGTTTAACGAGACGCAAAGCTCCTAGCGAGTTCGTCATGCCCGGGCTTGTCCCGGGCATT TTGCGTATCGATCCACGGCT
Product: putative Zn-dependent protease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 459; Mature: 458
Protein sequence:
>459_residues MSTITFARRLACVLSVAAAALTLAPAAHAATKIQRLVSPGGIEAWFVQDATVPLIAMEYAFEGGASQDPAGKPGVGNLVA DLLDEGSGDLDSKTFHERLDRRAIELSFQVSRDQFRGSLRMLRDTKDEAFDLLRTALTSPHFDSTDVERIRSQVISGLRR ETTNPSSLAGRKFLELAFPNHPYGRPANGTLETVPTITVDDLKSYVGRVLAKDTLKVAVVGDVDPATLGKLLDQTFGALP AKAQLTPVPDIVATKPPQRVLVPLDVPQTVITFGGPGIRRHDPNFMAAYVVNHILGGGGLSSRLYKEVREKRGLAYSVYD ALLWMDHSALFIGNTATRFDRAGETIAAVEQEIRRIAEEGPTQQELDEAKSYINGSQMLALDTSSKLAQAMLQYQLDKMP IDYIEKRSEIVNAVTLDDAKKAAKQLWSQGLLTAVVGRTPQAAAEPGQAPATAPTTKTN
Sequences:
>Translated_459_residues MSTITFARRLACVLSVAAAALTLAPAAHAATKIQRLVSPGGIEAWFVQDATVPLIAMEYAFEGGASQDPAGKPGVGNLVA DLLDEGSGDLDSKTFHERLDRRAIELSFQVSRDQFRGSLRMLRDTKDEAFDLLRTALTSPHFDSTDVERIRSQVISGLRR ETTNPSSLAGRKFLELAFPNHPYGRPANGTLETVPTITVDDLKSYVGRVLAKDTLKVAVVGDVDPATLGKLLDQTFGALP AKAQLTPVPDIVATKPPQRVLVPLDVPQTVITFGGPGIRRHDPNFMAAYVVNHILGGGGLSSRLYKEVREKRGLAYSVYD ALLWMDHSALFIGNTATRFDRAGETIAAVEQEIRRIAEEGPTQQELDEAKSYINGSQMLALDTSSKLAQAMLQYQLDKMP IDYIEKRSEIVNAVTLDDAKKAAKQLWSQGLLTAVVGRTPQAAAEPGQAPATAPTTKTN >Mature_458_residues STITFARRLACVLSVAAAALTLAPAAHAATKIQRLVSPGGIEAWFVQDATVPLIAMEYAFEGGASQDPAGKPGVGNLVAD LLDEGSGDLDSKTFHERLDRRAIELSFQVSRDQFRGSLRMLRDTKDEAFDLLRTALTSPHFDSTDVERIRSQVISGLRRE TTNPSSLAGRKFLELAFPNHPYGRPANGTLETVPTITVDDLKSYVGRVLAKDTLKVAVVGDVDPATLGKLLDQTFGALPA KAQLTPVPDIVATKPPQRVLVPLDVPQTVITFGGPGIRRHDPNFMAAYVVNHILGGGGLSSRLYKEVREKRGLAYSVYDA LLWMDHSALFIGNTATRFDRAGETIAAVEQEIRRIAEEGPTQQELDEAKSYINGSQMLALDTSSKLAQAMLQYQLDKMPI DYIEKRSEIVNAVTLDDAKKAAKQLWSQGLLTAVVGRTPQAAAEPGQAPATAPTTKTN
Specific function: Unknown
COG id: COG0612
COG function: function code R; Predicted Zn-dependent peptidases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M16 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011249 - InterPro: IPR011237 - InterPro: IPR007863 [H]
Pfam domain/function: PF05193 Peptidase_M16_C [H]
EC number: NA
Molecular weight: Translated: 49643; Mature: 49512
Theoretical pI: Translated: 6.65; Mature: 6.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTITFARRLACVLSVAAAALTLAPAAHAATKIQRLVSPGGIEAWFVQDATVPLIAMEYA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEHH FEGGASQDPAGKPGVGNLVADLLDEGSGDLDSKTFHERLDRRAIELSFQVSRDQFRGSLR HCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHEEEECHHHHHHHHH MLRDTKDEAFDLLRTALTSPHFDSTDVERIRSQVISGLRRETTNPSSLAGRKFLELAFPN HHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHEECCC HPYGRPANGTLETVPTITVDDLKSYVGRVLAKDTLKVAVVGDVDPATLGKLLDQTFGALP CCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHCCCC AKAQLTPVPDIVATKPPQRVLVPLDVPQTVITFGGPGIRRHDPNFMAAYVVNHILGGGGL CCCCCCCCCHHHCCCCCCCEEEECCCCCHHEECCCCCCCCCCCCHHHHHHHHHHHCCCCH SSRLYKEVREKRGLAYSVYDALLWMDHSALFIGNTATRFDRAGETIAAVEQEIRRIAEEG HHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEECCCHHHHHHCCHHHHHHHHHHHHHHHCC PTQQELDEAKSYINGSQMLALDTSSKLAQAMLQYQLDKMPIDYIEKRSEIVNAVTLDDAK CCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH KAAKQLWSQGLLTAVVGRTPQAAAEPGQAPATAPTTKTN HHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCC >Mature Secondary Structure STITFARRLACVLSVAAAALTLAPAAHAATKIQRLVSPGGIEAWFVQDATVPLIAMEYA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEHH FEGGASQDPAGKPGVGNLVADLLDEGSGDLDSKTFHERLDRRAIELSFQVSRDQFRGSLR HCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHEEEECHHHHHHHHH MLRDTKDEAFDLLRTALTSPHFDSTDVERIRSQVISGLRRETTNPSSLAGRKFLELAFPN HHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHEECCC HPYGRPANGTLETVPTITVDDLKSYVGRVLAKDTLKVAVVGDVDPATLGKLLDQTFGALP CCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHCCCC AKAQLTPVPDIVATKPPQRVLVPLDVPQTVITFGGPGIRRHDPNFMAAYVVNHILGGGGL CCCCCCCCCHHHCCCCCCCEEEECCCCCHHEECCCCCCCCCCCCHHHHHHHHHHHCCCCH SSRLYKEVREKRGLAYSVYDALLWMDHSALFIGNTATRFDRAGETIAAVEQEIRRIAEEG HHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEECCCHHHHHHCCHHHHHHHHHHHHHHHCC PTQQELDEAKSYINGSQMLALDTSSKLAQAMLQYQLDKMPIDYIEKRSEIVNAVTLDDAK CCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH KAAKQLWSQGLLTAVVGRTPQAAAEPGQAPATAPTTKTN HHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]