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The map label for this gene is coxC [H]

Identifier: 146342852

GI number: 146342852

Start: 6256034

End: 6257269

Strand: Reverse

Name: coxC [H]

Synonym: BRADO6032

Alternate gene names: 146342852

Gene position: 6257269-6256034 (Counterclockwise)

Preceding gene: 146342853

Following gene: 146342851

Centisome position: 83.92

GC content: 69.42

Gene sequence:

>1236_bases
ATGATCGAAGGATACGATCCTTATCTCGTCGCGCTCTCGGTCGTGATCGCGAGCCTGGGTGGCTATACCGGATTCAGTCT
CACCGCGCGCATTCGCAGCGGGCCGGGGGCGAACCCGCGCGTGCTGCTGTCCGGCGCCGCGGGCATCCTGGCGGTGGGCA
TCTGGACCATGCATTTCGTGGGCATGATGGCCGCGCCACTGCCTCCAGATGCCGTCTATCTGGTGCTGCCGACCATCATC
TCCTTTTTGATCTGCGCGCTGGTCGTCGGGATTTCGCTGTTCTTCGTCAGCATCGGCGATCCCTCAGCCCAGCGCTTGAT
TCCCTCGGCGCTGCTGCTCGGTGCCGGCATCGCCAGCATGCACTATGTCGGCATGCACGGCCTCGCCGGCCGCTTCGGCC
TGACGCACGACCCGTTGCTCGTGGCGCTGTCGGTCGCGATCGCGATCGTCGCCGCCTATGGCGGCTTGCGCATCTTCCTG
GCGCGGCAGGATGGCCTGCGGCTCGCGATCAGCGCGCTCGCCTTCGGCGTCGCTGTCTCCGGTATGCATTATACGGCGAT
GCTGGGCATGCATGTGGTGCCGGCGGGCGAGGGCCATCAGCACGTGGCCGCAGGGCTTGCTGCGTCGCCGCAGGCGCTGG
CGATCGTGGTCTCTGTGCTGTGCTTCGTCGTCGCCGCCGGCTTCCTGCTGTCGCTGGTGCCCGAGCCCCAGCGCCCGTCG
AAGCCGACCCCGGTGATGGTCGAGCCAGCCCCCGAACTCGCGCCGGAACCGGTCAGCCCGCCGTCGCCGGCGCATCCCGT
GGCGCCGACTCCTCCCGAGTCCGTCGAGAGTGTTGCGCCCGCGCGCGTCAAGGCCGCGCCGCTCGGCGGCATCGGCCAGC
CGCCACGCGTTGCAGCGGCGCGGCTGCCGCTCGAAGGCGCCAACGGCACCCATTTCATCGATGCCAGTGATGTCCGCAGC
GTCCGCGCCGACGCGCACTACACCAGGGTACATGACGGCACCCGCGAGCGGATGTGTCCGTGGTCGATCTCCGAGGCCGA
GGCGCAGCTCGATCCCGGCCGCTTCATCCGCGTCCATCGCAGTCACATCGTCGCGATCGAGCACGTGACCTTCGTCGGCA
AGGAGGGCGAGGGCGCGATCATCGAGCTCGACGGCCCGTCGAAGCCGCGCGTGCCGGTGAGCCGCGCCAAGGTCGCCGAG
GTGAAGGCGCGGCTTGGGCTGCGGCGGCCGGCCTGA

Upstream 100 bases:

>100_bases
TCCCCTCCCGCTCCCCGCCTTGTGTTGTCATTCTCGGCGCGCCCCCTGTAAAACCTCTCCCGGGAGGAGGCTGGCCCGTG
GTGACGGGCAGCCGACAAGG

Downstream 100 bases:

>100_bases
TGTCAGAACGTTGATTTCGCAGCCGCAATATTCGGCGCACCCACTTCCCGCAACGCACGTCCATCGACACCGCAAGCATC
GCCTGTCTGCGCGCCTTCGT

Product: carbon monoxide dehydrogenase CoxC signalling protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 411

Protein sequence:

>411_residues
MIEGYDPYLVALSVVIASLGGYTGFSLTARIRSGPGANPRVLLSGAAGILAVGIWTMHFVGMMAAPLPPDAVYLVLPTII
SFLICALVVGISLFFVSIGDPSAQRLIPSALLLGAGIASMHYVGMHGLAGRFGLTHDPLLVALSVAIAIVAAYGGLRIFL
ARQDGLRLAISALAFGVAVSGMHYTAMLGMHVVPAGEGHQHVAAGLAASPQALAIVVSVLCFVVAAGFLLSLVPEPQRPS
KPTPVMVEPAPELAPEPVSPPSPAHPVAPTPPESVESVAPARVKAAPLGGIGQPPRVAAARLPLEGANGTHFIDASDVRS
VRADAHYTRVHDGTRERMCPWSISEAEAQLDPGRFIRVHRSHIVAIEHVTFVGKEGEGAIIELDGPSKPRVPVSRAKVAE
VKARLGLRRPA

Sequences:

>Translated_411_residues
MIEGYDPYLVALSVVIASLGGYTGFSLTARIRSGPGANPRVLLSGAAGILAVGIWTMHFVGMMAAPLPPDAVYLVLPTII
SFLICALVVGISLFFVSIGDPSAQRLIPSALLLGAGIASMHYVGMHGLAGRFGLTHDPLLVALSVAIAIVAAYGGLRIFL
ARQDGLRLAISALAFGVAVSGMHYTAMLGMHVVPAGEGHQHVAAGLAASPQALAIVVSVLCFVVAAGFLLSLVPEPQRPS
KPTPVMVEPAPELAPEPVSPPSPAHPVAPTPPESVESVAPARVKAAPLGGIGQPPRVAAARLPLEGANGTHFIDASDVRS
VRADAHYTRVHDGTRERMCPWSISEAEAQLDPGRFIRVHRSHIVAIEHVTFVGKEGEGAIIELDGPSKPRVPVSRAKVAE
VKARLGLRRPA
>Mature_411_residues
MIEGYDPYLVALSVVIASLGGYTGFSLTARIRSGPGANPRVLLSGAAGILAVGIWTMHFVGMMAAPLPPDAVYLVLPTII
SFLICALVVGISLFFVSIGDPSAQRLIPSALLLGAGIASMHYVGMHGLAGRFGLTHDPLLVALSVAIAIVAAYGGLRIFL
ARQDGLRLAISALAFGVAVSGMHYTAMLGMHVVPAGEGHQHVAAGLAASPQALAIVVSVLCFVVAAGFLLSLVPEPQRPS
KPTPVMVEPAPELAPEPVSPPSPAHPVAPTPPESVESVAPARVKAAPLGGIGQPPRVAAARLPLEGANGTHFIDASDVRS
VRADAHYTRVHDGTRERMCPWSISEAEAQLDPGRFIRVHRSHIVAIEHVTFVGKEGEGAIIELDGPSKPRVPVSRAKVAE
VKARLGLRRPA

Specific function: Probable signaling protein whose physiological role is not yet known [H]

COG id: COG3300

COG function: function code T; MHYT domain (predicted integral membrane sensor domain)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 42724; Mature: 42724

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: PS50924 MHYT ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEGYDPYLVALSVVIASLGGYTGFSLTARIRSGPGANPRVLLSGAAGILAVGIWTMHFV
CCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHH
GMMAAPLPPDAVYLVLPTIISFLICALVVGISLFFVSIGDPSAQRLIPSALLLGAGIASM
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHCCHHHH
HYVGMHGLAGRFGLTHDPLLVALSVAIAIVAAYGGLRIFLARQDGLRLAISALAFGVAVS
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHC
GMHYTAMLGMHVVPAGEGHQHVAAGLAASPQALAIVVSVLCFVVAAGFLLSLVPEPQRPS
CCHHHHHHHEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
KPTPVMVEPAPELAPEPVSPPSPAHPVAPTPPESVESVAPARVKAAPLGGIGQPPRVAAA
CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCCCCCHHHE
RLPLEGANGTHFIDASDVRSVRADAHYTRVHDGTRERMCPWSISEAEAQLDPGRFIRVHR
ECCCCCCCCCEEECHHHHHHHHHCCHHHHCCCCCHHCCCCCCCCHHHHHCCCCCEEEEEC
SHIVAIEHVTFVGKEGEGAIIELDGPSKPRVPVSRAKVAEVKARLGLRRPA
CEEEEEEEEEEECCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MIEGYDPYLVALSVVIASLGGYTGFSLTARIRSGPGANPRVLLSGAAGILAVGIWTMHFV
CCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHH
GMMAAPLPPDAVYLVLPTIISFLICALVVGISLFFVSIGDPSAQRLIPSALLLGAGIASM
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHCCHHHH
HYVGMHGLAGRFGLTHDPLLVALSVAIAIVAAYGGLRIFLARQDGLRLAISALAFGVAVS
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHC
GMHYTAMLGMHVVPAGEGHQHVAAGLAASPQALAIVVSVLCFVVAAGFLLSLVPEPQRPS
CCHHHHHHHEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
KPTPVMVEPAPELAPEPVSPPSPAHPVAPTPPESVESVAPARVKAAPLGGIGQPPRVAAA
CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCCCCCHHHE
RLPLEGANGTHFIDASDVRSVRADAHYTRVHDGTRERMCPWSISEAEAQLDPGRFIRVHR
ECCCCCCCCCEEECHHHHHHHHHCCHHHHCCCCCHHCCCCCCCCHHHHHCCCCCEEEEEC
SHIVAIEHVTFVGKEGEGAIIELDGPSKPRVPVSRAKVAEVKARLGLRRPA
CEEEEEEEEEEECCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377; 11728710 [H]