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The map label for this gene is ydcO [H]

Identifier: 146342841

GI number: 146342841

Start: 6242634

End: 6243863

Strand: Direct

Name: ydcO [H]

Synonym: BRADO6021

Alternate gene names: 146342841

Gene position: 6242634-6243863 (Clockwise)

Preceding gene: 146342840

Following gene: 146342842

Centisome position: 83.72

GC content: 66.1

Gene sequence:

>1230_bases
ATGTTCAATGCCATTGAACGGCCGCCCGGCCATCCACCTTCCGCAGCCCGACTGGCCGGCGATTTCGGTCCGCTCTACGC
CGCGCACGGCTTCATCGGCTGGCTGTTCGCGATCACCGGTCCGGTCGCGATCGTTTTGTCGGTCGGCGCCAATGGCGGGC
TCTCGCGGGCCGAGATCGCGTCGTGGATCTTCGGCGTGTTCTTCATCAACGGTCTGATCACGCTCCTGCTGTCCTGGCGT
TATCGCGAACCGCTCGTGCTGTTCTGGACCATCCCCGGCACGGTGCTGGTCGGCCAATCGCTGACTCATCTCAGCTTCGC
GCAGGTGGTCGGCGCATTCTACGGCACCGCGCTGTTGATGTTCATACTCGGGCTCTCCGGGTGGGTGAAGCGCGCGATGC
AATTGGTGCCGATGCCGATCGTCATGGGAATGGTCGCCGGCGTCTTCCTGCGCTTCGGCCTCGACCTGGTGCGCTCCGTG
CTCGGCGAATTCGCCATCGCCGGTCCCATGGTCATGGTCTGGCTGATACTCACCGCGCTGCCTTCGCTCGGCCGGCGTTG
TCCGCCCATCATCGGCGCGCTCGTGATCGGGACCGTCGCGGCGATCCTGCTCGGCAAATATGACCACAGCGCCTCACTGC
AGCTTGCGTTGATCCATCCAGTCGTTCCGACGCCGTCCTGGTCGCTCCCCGCCATGATCGAGCTGATCGTTCCGCTCGCG
GTCACCGTGCTCGTGGTGCAGAACGGCCAGGGCTTTGCGGTGCTGAGCGCCGCGGGCCATAAGCCGCCTGTCAATCTCGT
CACGGTCGCCTGCGGCATCGGCTCGGCACTGGCCGCCATCGTCGGTGGCGTCTCGACCTGTCTCACCGGCCCGACCAATG
CCATCGTCGTCTCCGGCGGCGAGCCTGATCGTCATTATACCGCTGCGATGATGGTCGGCGTTCTGGCGCTCGGCTTCGGC
CTGCTGGCCCCCACTTTCACGACACTGCTGCTGATCGCGCCGAAGGCGCTGATCACCGCGCTGGCGGGCCTCGCCATGCT
GCGCGTGCTACAGACGGCGTTCGTGACCGCGTTCAAGACGAACTTCTCGCTCGGCGCCCTCGTCGCCTTTCTCGTCACCG
TGGCCGACGGACCGCTGCTCAACATCGGCGCGGCGTTCTGGGGACTCGTCGCGGGCTTCGCGATCTCCTGGATGCTGGAG
CGTGCGGATTTCACGGCGGCGGGCGCGTAG

Upstream 100 bases:

>100_bases
GGCTGGCTCGCTTCCGCCACAACATCCGTTGGAGACGCCAAGCACGACAAGTCAAGAACAGCAAGCCAAGAACAACAACA
AGAGCCTCAGCCTGCCCTTC

Downstream 100 bases:

>100_bases
CGGAATTTCGCAGCGCACCACGCTGCGTTGTCGCGATCGCGCCTCGAGAGGCAAAGCCCTATTGCAGCGCCGGTGGATCG
CGCTACACTTCCCGACCAAA

Product: major facilitator superfamily benzoate transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MFNAIERPPGHPPSAARLAGDFGPLYAAHGFIGWLFAITGPVAIVLSVGANGGLSRAEIASWIFGVFFINGLITLLLSWR
YREPLVLFWTIPGTVLVGQSLTHLSFAQVVGAFYGTALLMFILGLSGWVKRAMQLVPMPIVMGMVAGVFLRFGLDLVRSV
LGEFAIAGPMVMVWLILTALPSLGRRCPPIIGALVIGTVAAILLGKYDHSASLQLALIHPVVPTPSWSLPAMIELIVPLA
VTVLVVQNGQGFAVLSAAGHKPPVNLVTVACGIGSALAAIVGGVSTCLTGPTNAIVVSGGEPDRHYTAAMMVGVLALGFG
LLAPTFTTLLLIAPKALITALAGLAMLRVLQTAFVTAFKTNFSLGALVAFLVTVADGPLLNIGAAFWGLVAGFAISWMLE
RADFTAAGA

Sequences:

>Translated_409_residues
MFNAIERPPGHPPSAARLAGDFGPLYAAHGFIGWLFAITGPVAIVLSVGANGGLSRAEIASWIFGVFFINGLITLLLSWR
YREPLVLFWTIPGTVLVGQSLTHLSFAQVVGAFYGTALLMFILGLSGWVKRAMQLVPMPIVMGMVAGVFLRFGLDLVRSV
LGEFAIAGPMVMVWLILTALPSLGRRCPPIIGALVIGTVAAILLGKYDHSASLQLALIHPVVPTPSWSLPAMIELIVPLA
VTVLVVQNGQGFAVLSAAGHKPPVNLVTVACGIGSALAAIVGGVSTCLTGPTNAIVVSGGEPDRHYTAAMMVGVLALGFG
LLAPTFTTLLLIAPKALITALAGLAMLRVLQTAFVTAFKTNFSLGALVAFLVTVADGPLLNIGAAFWGLVAGFAISWMLE
RADFTAAGA
>Mature_409_residues
MFNAIERPPGHPPSAARLAGDFGPLYAAHGFIGWLFAITGPVAIVLSVGANGGLSRAEIASWIFGVFFINGLITLLLSWR
YREPLVLFWTIPGTVLVGQSLTHLSFAQVVGAFYGTALLMFILGLSGWVKRAMQLVPMPIVMGMVAGVFLRFGLDLVRSV
LGEFAIAGPMVMVWLILTALPSLGRRCPPIIGALVIGTVAAILLGKYDHSASLQLALIHPVVPTPSWSLPAMIELIVPLA
VTVLVVQNGQGFAVLSAAGHKPPVNLVTVACGIGSALAAIVGGVSTCLTGPTNAIVVSGGEPDRHYTAAMMVGVLALGFG
LLAPTFTTLLLIAPKALITALAGLAMLRVLQTAFVTAFKTNFSLGALVAFLVTVADGPLLNIGAAFWGLVAGFAISWMLE
RADFTAAGA

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=370, Percent_Identity=31.0810810810811, Blast_Score=144, Evalue=7e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 42498; Mature: 42498

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNAIERPPGHPPSAARLAGDFGPLYAAHGFIGWLFAITGPVAIVLSVGANGGLSRAEIA
CCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHH
SWIFGVFFINGLITLLLSWRYREPLVLFWTIPGTVLVGQSLTHLSFAQVVGAFYGTALLM
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEECCCCHHHHHHHHHHHHHHHHHHHH
FILGLSGWVKRAMQLVPMPIVMGMVAGVFLRFGLDLVRSVLGEFAIAGPMVMVWLILTAL
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PSLGRRCPPIIGALVIGTVAAILLGKYDHSASLQLALIHPVVPTPSWSLPAMIELIVPLA
HHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
VTVLVVQNGQGFAVLSAAGHKPPVNLVTVACGIGSALAAIVGGVSTCLTGPTNAIVVSGG
HHHHEEECCCCEEEEECCCCCCCCHHEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
EPDRHYTAAMMVGVLALGFGLLAPTFTTLLLIAPKALITALAGLAMLRVLQTAFVTAFKT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NFSLGALVAFLVTVADGPLLNIGAAFWGLVAGFAISWMLERADFTAAGA
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MFNAIERPPGHPPSAARLAGDFGPLYAAHGFIGWLFAITGPVAIVLSVGANGGLSRAEIA
CCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHH
SWIFGVFFINGLITLLLSWRYREPLVLFWTIPGTVLVGQSLTHLSFAQVVGAFYGTALLM
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEECCCCHHHHHHHHHHHHHHHHHHHH
FILGLSGWVKRAMQLVPMPIVMGMVAGVFLRFGLDLVRSVLGEFAIAGPMVMVWLILTAL
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PSLGRRCPPIIGALVIGTVAAILLGKYDHSASLQLALIHPVVPTPSWSLPAMIELIVPLA
HHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
VTVLVVQNGQGFAVLSAAGHKPPVNLVTVACGIGSALAAIVGGVSTCLTGPTNAIVVSGG
HHHHEEECCCCEEEEECCCCCCCCHHEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
EPDRHYTAAMMVGVLALGFGLLAPTFTTLLLIAPKALITALAGLAMLRVLQTAFVTAFKT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NFSLGALVAFLVTVADGPLLNIGAAFWGLVAGFAISWMLERADFTAAGA
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]