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The map label for this gene is ycjN [C]

Identifier: 146342842

GI number: 146342842

Start: 6244000

End: 6245319

Strand: Direct

Name: ycjN [C]

Synonym: BRADO6022

Alternate gene names: 146342842

Gene position: 6244000-6245319 (Clockwise)

Preceding gene: 146342841

Following gene: 146342843

Centisome position: 83.74

GC content: 65.45

Gene sequence:

>1320_bases
ATGACCGCGATCACGCGCCGCAACATGCTTGCGGGCACGGCAGCAGCGGGCGCGCTGGCGCTCACCGGCCAGCCCGCCCG
GTCGGAGCCGCAGTGGAAGAAATATGCCGGCACCAAGCTCGAGGTGATCCTGGCAAAGGGGCCGCGCGGCGACAATCTGC
AGAAGAACATCAAGGAATTCACCGCGCTGACCGGCATCGAGGTGGAGTCCGAGCAGATCCCCGAGCAGCAGCAGCGCCAG
AAGGTGGTGATCGAGCTGTCGTCGGGCAAGCCGAGCTTCGACGTGGTTCACTTGAGCTATCACGTGCAGAAGCGGCAGTT
CGAGAAGGCCGGCTGGCTCGCCGACATCACCGACATGATGAAGGATCCGAATCTCACGGCCCCTGACCTCGTTCCCAGCG
ATTTCTCCGCCGCCGGCTTGACTTACGCCAGCAACGACAAGGGCCGCATGTTCTCGCTGCCATGGTCGGTCGACTACTTC
ATCCTCTACTATAACAAGGAGCTGTTCGCGAAGAAGGGCGTCGAGGTGCCGAAGACGCTCGACGAGATGGTCACGGCCGC
GCAGAAACTGACCGATGCCAAGGACGGCACCTTCGGCTTCGTCGGCCGCGGCCTGCGCAACGCCAACATGACCCTGTGGA
CGAACTTTTTCCTCAACTATGGCGGCGAATTCCTCGACGCCAAGGGCAACATCCTCACCGACGGCCCCGAGGCCATCGAG
GCCACCAAGCTCTATCAGAAGCTCCTGACCACCTGCGCGCCTCCCGGCGTCGCCGGGTTCAACTGGATGGAGTCGATGGC
CTCGTTCACGCAAGGCCGCTCGGCGATGTGGATCGACGGCGTCGGCTGGGCGCCGCCGCTGGAGGATCCCAATGCCTCGC
GCGTGGTCGGCAAGGTCGGCTACACCGTGGTGCCGGCAGGTCCCAAGGGCCAGTACTCGGCGACCTATGGCGACGGCATC
GGCATTGCGGCGGCGAGCAAGAACAAGGAGGCGGCTTGGCTGCTCTGCCAGTGGCTGGTGTCGAAGCCGCAGGGCGCCCG
GCTGGTGCAGGCCGGCGGCGGCGTGCCGTTCCGCAACTCGGTGCTCAACGATGCCGAGATCCAGGGCGGCGTGAAGATGC
CGAAGGAATGGCTGCAGTCGGCGATCGACTCCGGCAAGATCAGCAAGCTCGGCCTGCCCGTGATCATCCCGGTCGCCGAA
TTCCGCGACATCGTCGGCGCGGCGCTCACCGCGACGCTGTCGGGCGCCGATCCCGCCACCGAGCTGAAGAAGGCGCACGA
GCAGTTCCGCCCGATCCTGGAGCGCAGCGAGAAAGCGTGA

Upstream 100 bases:

>100_bases
TCGCGCCTCGAGAGGCAAAGCCCTATTGCAGCGCCGGTGGATCGCGCTACACTTCCCGACCAAACAACAATGATCTCAAG
AATGTTTTGGGGAGGATTGA

Downstream 100 bases:

>100_bases
GCACGATCGTCGAACAGGCGGGCGCGGCAGCGGAAGCTGCTGCGCCGGAGCGCGCCTTACGGCCGCCGTCCTACTGGCCT
TTCGTGGTGCCGGCGCTCGT

Product: ABC transporter substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 438

Protein sequence:

>439_residues
MTAITRRNMLAGTAAAGALALTGQPARSEPQWKKYAGTKLEVILAKGPRGDNLQKNIKEFTALTGIEVESEQIPEQQQRQ
KVVIELSSGKPSFDVVHLSYHVQKRQFEKAGWLADITDMMKDPNLTAPDLVPSDFSAAGLTYASNDKGRMFSLPWSVDYF
ILYYNKELFAKKGVEVPKTLDEMVTAAQKLTDAKDGTFGFVGRGLRNANMTLWTNFFLNYGGEFLDAKGNILTDGPEAIE
ATKLYQKLLTTCAPPGVAGFNWMESMASFTQGRSAMWIDGVGWAPPLEDPNASRVVGKVGYTVVPAGPKGQYSATYGDGI
GIAAASKNKEAAWLLCQWLVSKPQGARLVQAGGGVPFRNSVLNDAEIQGGVKMPKEWLQSAIDSGKISKLGLPVIIPVAE
FRDIVGAALTATLSGADPATELKKAHEQFRPILERSEKA

Sequences:

>Translated_439_residues
MTAITRRNMLAGTAAAGALALTGQPARSEPQWKKYAGTKLEVILAKGPRGDNLQKNIKEFTALTGIEVESEQIPEQQQRQ
KVVIELSSGKPSFDVVHLSYHVQKRQFEKAGWLADITDMMKDPNLTAPDLVPSDFSAAGLTYASNDKGRMFSLPWSVDYF
ILYYNKELFAKKGVEVPKTLDEMVTAAQKLTDAKDGTFGFVGRGLRNANMTLWTNFFLNYGGEFLDAKGNILTDGPEAIE
ATKLYQKLLTTCAPPGVAGFNWMESMASFTQGRSAMWIDGVGWAPPLEDPNASRVVGKVGYTVVPAGPKGQYSATYGDGI
GIAAASKNKEAAWLLCQWLVSKPQGARLVQAGGGVPFRNSVLNDAEIQGGVKMPKEWLQSAIDSGKISKLGLPVIIPVAE
FRDIVGAALTATLSGADPATELKKAHEQFRPILERSEKA
>Mature_438_residues
TAITRRNMLAGTAAAGALALTGQPARSEPQWKKYAGTKLEVILAKGPRGDNLQKNIKEFTALTGIEVESEQIPEQQQRQK
VVIELSSGKPSFDVVHLSYHVQKRQFEKAGWLADITDMMKDPNLTAPDLVPSDFSAAGLTYASNDKGRMFSLPWSVDYFI
LYYNKELFAKKGVEVPKTLDEMVTAAQKLTDAKDGTFGFVGRGLRNANMTLWTNFFLNYGGEFLDAKGNILTDGPEAIEA
TKLYQKLLTTCAPPGVAGFNWMESMASFTQGRSAMWIDGVGWAPPLEDPNASRVVGKVGYTVVPAGPKGQYSATYGDGIG
IAAASKNKEAAWLLCQWLVSKPQGARLVQAGGGVPFRNSVLNDAEIQGGVKMPKEWLQSAIDSGKISKLGLPVIIPVAEF
RDIVGAALTATLSGADPATELKKAHEQFRPILERSEKA

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 47549; Mature: 47418

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAITRRNMLAGTAAAGALALTGQPARSEPQWKKYAGTKLEVILAKGPRGDNLQKNIKEF
CCCCCCCCHHHCHHHCCEEEECCCCCCCCCCHHHHCCCEEEEEEECCCCCCCHHHHHHHH
TALTGIEVESEQIPEQQQRQKVVIELSSGKPSFDVVHLSYHVQKRQFEKAGWLADITDMM
HHHCCCEECHHHCCCHHCCCEEEEEECCCCCCEEEEEEEEHHHHHHHHHCCCHHHHHHHH
KDPNLTAPDLVPSDFSAAGLTYASNDKGRMFSLPWSVDYFILYYNKELFAKKGVEVPKTL
CCCCCCCCCCCCCCCCCCCCEEECCCCCCEEECCCCCEEEEEEECHHHHHHCCCCCHHHH
DEMVTAAQKLTDAKDGTFGFVGRGLRNANMTLWTNFFLNYGGEFLDAKGNILTDGPEAIE
HHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEHHHHHCCCCEEECCCCEECCCHHHHH
ATKLYQKLLTTCAPPGVAGFNWMESMASFTQGRSAMWIDGVGWAPPLEDPNASRVVGKVG
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHEEEECC
YTVVPAGPKGQYSATYGDGIGIAAASKNKEAAWLLCQWLVSKPQGARLVQAGGGVPFRNS
EEEEECCCCCCCCEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCHHH
VLNDAEIQGGVKMPKEWLQSAIDSGKISKLGLPVIIPVAEFRDIVGAALTATLSGADPAT
CCCCHHHCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHEECCCCHHH
ELKKAHEQFRPILERSEKA
HHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TAITRRNMLAGTAAAGALALTGQPARSEPQWKKYAGTKLEVILAKGPRGDNLQKNIKEF
CCCCCCCHHHCHHHCCEEEECCCCCCCCCCHHHHCCCEEEEEEECCCCCCCHHHHHHHH
TALTGIEVESEQIPEQQQRQKVVIELSSGKPSFDVVHLSYHVQKRQFEKAGWLADITDMM
HHHCCCEECHHHCCCHHCCCEEEEEECCCCCCEEEEEEEEHHHHHHHHHCCCHHHHHHHH
KDPNLTAPDLVPSDFSAAGLTYASNDKGRMFSLPWSVDYFILYYNKELFAKKGVEVPKTL
CCCCCCCCCCCCCCCCCCCCEEECCCCCCEEECCCCCEEEEEEECHHHHHHCCCCCHHHH
DEMVTAAQKLTDAKDGTFGFVGRGLRNANMTLWTNFFLNYGGEFLDAKGNILTDGPEAIE
HHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEHHHHHCCCCEEECCCCEECCCHHHHH
ATKLYQKLLTTCAPPGVAGFNWMESMASFTQGRSAMWIDGVGWAPPLEDPNASRVVGKVG
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHEEEECC
YTVVPAGPKGQYSATYGDGIGIAAASKNKEAAWLLCQWLVSKPQGARLVQAGGGVPFRNS
EEEEECCCCCCCCEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCHHH
VLNDAEIQGGVKMPKEWLQSAIDSGKISKLGLPVIIPVAEFRDIVGAALTATLSGADPAT
CCCCHHHCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHEECCCCHHH
ELKKAHEQFRPILERSEKA
HHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]