| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is yyaM [H]
Identifier: 146342766
GI number: 146342766
Start: 6159338
End: 6160267
Strand: Direct
Name: yyaM [H]
Synonym: BRADO5940
Alternate gene names: 146342766
Gene position: 6159338-6160267 (Clockwise)
Preceding gene: 146342765
Following gene: 146342767
Centisome position: 82.6
GC content: 65.16
Gene sequence:
>930_bases ATGTCTGCCGCCGATCCCACGGTGTCCCCAGCGCCCGCGCGCGCCTGGGTCGCCAACCAACCCTACGTGCTGCTCAGCAT CACCGCGCTGTGCTGGGCCGGCAACGCGATCGTCGGCCGCCTTGCCGCCGGACACATTCCCCCGGTGACGCTGTCGTTCC TGCGCTGGTCGCTGGCGTTCCTGATCATTCTGCCGCTAGCCTGGAAGCAGCTTCGCCAGGACTGGCCGGCGATCCGCTCC AAGCTCGGCATCATGGTCGCGCTGTCGGTCACCGGCATCGGCGCCTTCAACACGCTGCAATACTGGTCGCTGGAATACAC CCAGGCGCTCAACACGCTGCTGCTACAATCCGGCGGCCCGCTGATCGTCGCGCTCTGGTCGATGCTGCTGCTGCGCGTGC ATCTGACGTTCGCGCAGGCGGTCGGCATCGTGCTGTCGATGATCGGCGTGTTGCTGATCCTCACCCGCGGTCACCCGGCA GCGATCGCCGACATCAGCTTCAACAAGGGCGACCTGATTTTCCTGCTGGCTATGGCGGTGTTCGGCTTCTACTCGGTGCT GACGATCAAGCGGCCGCAGATCCACGGCCTATCGATGGTCGCATTCACCTTCGGCTGTGGTGCCGCAAGCCTGATCCCGC TGTTGATCTGGGAGCTCAACACGCGCCCGGTGATGGCGTTCGACACCCAGAACCTGCTGTCGCTGCTCTACGTCGCGATC TTCCCCTCGACCATCGCCTATCTCTGCTTCAATCGCGGCGTGCTGCTGATCGGCGCCAACCGCGCCGCGCCGTTCTTTCA TGTGGTGCCGGTGTTCGGCTCGATCATGGCGTTCGTCTTCCTCGGCGAGCAGCCGCAACTCTTCCACGTGATCGGCTTCG CCCTGGTGCTGGCCGGCGTCTACGCCGCCTCGCGCAAGCAGGCGACGTGA
Upstream 100 bases:
>100_bases GCAGCCGCAATTAGTGTCTCTCCGAATGGCCGGGGAGGACCAGCGGCCGGGATGACCGGGCCGGATACCGCGGCGCAAGA ACCGGGACCAACACCGTCGC
Downstream 100 bases:
>100_bases GGGGGATGCCGCGAAACAGCGGCGCTGCATGGCTCCAATTCGTCGCTATTCATTGTACCGCGAGGCGATTTGTCTCACCA TGGATGGCCTGACGCCCGAG
Product: DMT family permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 309; Mature: 308
Protein sequence:
>309_residues MSAADPTVSPAPARAWVANQPYVLLSITALCWAGNAIVGRLAAGHIPPVTLSFLRWSLAFLIILPLAWKQLRQDWPAIRS KLGIMVALSVTGIGAFNTLQYWSLEYTQALNTLLLQSGGPLIVALWSMLLLRVHLTFAQAVGIVLSMIGVLLILTRGHPA AIADISFNKGDLIFLLAMAVFGFYSVLTIKRPQIHGLSMVAFTFGCGAASLIPLLIWELNTRPVMAFDTQNLLSLLYVAI FPSTIAYLCFNRGVLLIGANRAAPFFHVVPVFGSIMAFVFLGEQPQLFHVIGFALVLAGVYAASRKQAT
Sequences:
>Translated_309_residues MSAADPTVSPAPARAWVANQPYVLLSITALCWAGNAIVGRLAAGHIPPVTLSFLRWSLAFLIILPLAWKQLRQDWPAIRS KLGIMVALSVTGIGAFNTLQYWSLEYTQALNTLLLQSGGPLIVALWSMLLLRVHLTFAQAVGIVLSMIGVLLILTRGHPA AIADISFNKGDLIFLLAMAVFGFYSVLTIKRPQIHGLSMVAFTFGCGAASLIPLLIWELNTRPVMAFDTQNLLSLLYVAI FPSTIAYLCFNRGVLLIGANRAAPFFHVVPVFGSIMAFVFLGEQPQLFHVIGFALVLAGVYAASRKQAT >Mature_308_residues SAADPTVSPAPARAWVANQPYVLLSITALCWAGNAIVGRLAAGHIPPVTLSFLRWSLAFLIILPLAWKQLRQDWPAIRSK LGIMVALSVTGIGAFNTLQYWSLEYTQALNTLLLQSGGPLIVALWSMLLLRVHLTFAQAVGIVLSMIGVLLILTRGHPAA IADISFNKGDLIFLLAMAVFGFYSVLTIKRPQIHGLSMVAFTFGCGAASLIPLLIWELNTRPVMAFDTQNLLSLLYVAIF PSTIAYLCFNRGVLLIGANRAAPFFHVVPVFGSIMAFVFLGEQPQLFHVIGFALVLAGVYAASRKQAT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 DUF6 domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 33477; Mature: 33346
Theoretical pI: Translated: 10.22; Mature: 10.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAADPTVSPAPARAWVANQPYVLLSITALCWAGNAIVGRLAAGHIPPVTLSFLRWSLAF CCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHH LIILPLAWKQLRQDWPAIRSKLGIMVALSVTGIGAFNTLQYWSLEYTQALNTLLLQSGGP HHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCC LIVALWSMLLLRVHLTFAQAVGIVLSMIGVLLILTRGHPAAIADISFNKGDLIFLLAMAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHH FGFYSVLTIKRPQIHGLSMVAFTFGCGAASLIPLLIWELNTRPVMAFDTQNLLSLLYVAI HHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHH FPSTIAYLCFNRGVLLIGANRAAPFFHVVPVFGSIMAFVFLGEQPQLFHVIGFALVLAGV HHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH YAASRKQAT HHHHCCCCC >Mature Secondary Structure SAADPTVSPAPARAWVANQPYVLLSITALCWAGNAIVGRLAAGHIPPVTLSFLRWSLAF CCCCCCCCCCCCCCEECCCCCHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHH LIILPLAWKQLRQDWPAIRSKLGIMVALSVTGIGAFNTLQYWSLEYTQALNTLLLQSGGP HHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCC LIVALWSMLLLRVHLTFAQAVGIVLSMIGVLLILTRGHPAAIADISFNKGDLIFLLAMAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHH FGFYSVLTIKRPQIHGLSMVAFTFGCGAASLIPLLIWELNTRPVMAFDTQNLLSLLYVAI HHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHH FPSTIAYLCFNRGVLLIGANRAAPFFHVVPVFGSIMAFVFLGEQPQLFHVIGFALVLAGV HHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH YAASRKQAT HHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377 [H]