| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is yyaM [H]
Identifier: 146342767
GI number: 146342767
Start: 6160374
End: 6161318
Strand: Direct
Name: yyaM [H]
Synonym: BRADO5941
Alternate gene names: 146342767
Gene position: 6160374-6161318 (Clockwise)
Preceding gene: 146342766
Following gene: 146342768
Centisome position: 82.62
GC content: 66.56
Gene sequence:
>945_bases GTGCCCACCGTATCACATTCCACCACGCCGCTGGCCTGGCTCAACAACCAGCCTTATCTGCTGCTGACGCTGGCCTCGCT GTTCTGGGCCGGCAACATCGTGCTGGCGCGCTATGTCGCCGGCCACGTGCCGCCGCTGACCTTGTCCTGCATCCGCTGGA TCGGAACCTTTCTGATGCTATGGCCGTTCGCGCGGGCACATCTCGTGCGCGACTGGCGCACTTTGCTCGCGAGCTGGCCG CTGCTGCTCGTCCTGGCGCTGACCGGCTTCGCCATCAACAACGCGCTGTCCTATTGGGCGATGCAGTATACCCAGGCCCT CAACGGCCTGCTGATCCAATCGTCGGCTCCGCTCTTCGTGGCGTTGTGGTCGCTCGTGCTGTTCGGCGTACGGCTGACGG CGGCGCAGTTCGCCGGCATCGCGATGTCCCTGACCGGCGTGCTGGTGATCCTGCTGCGCGGCGACCTCGGCGCGTTGGCC GCGATCCAGTTCAACCGCGGCGACCTGATGTTCGCCGGCGCGCTGCTGGTGTTCGGCATCTACTCCGCTGTCATGACACG GCGGCCAGCCGTGCATCAGCTGTCGCTGATCTCGTCCTGCACCGCCCTGGGCGCCCTGCTGCTGCTGCCGCTGGCGGCCT GGGAATACACGTCCGGCTTTGTGCTGCAGCTCGATCTCTTGTCGATCCTGACGCTCGGCTACGTCGTGGTGTTCGCCTCG ACGCTGGCTTATCTGTCCTTCAACCGCGGCATCAGCCTGATCGGACCGAACCGGGCCGCTCCCTTCCTGCACCTGGTGCC GTTGTTCGGCTCGGTGCTGGCGATCCTCCTGCTCGGCGAGGAGCTCAAGCCGTTCCACCTCGCGGGCTACGCGCTTGTGA TCGCCGGCGTGATCATCGCGTCGCGCGTCCCGCTCCGGCAGCCGCATCCGACGCCGAAGCCGTGA
Upstream 100 bases:
>100_bases TGCCGCGAAACAGCGGCGCTGCATGGCTCCAATTCGTCGCTATTCATTGTACCGCGAGGCGATTTGTCTCACCATGGATG GCCTGACGCCCGAGCCTCCC
Downstream 100 bases:
>100_bases GCCTGCGGCAAGACGCCCTTTCTGAGCAGTTCGCCATCATCCGACTGTCATCGAAGTGTCAGCGTCGCGTCAGACGCCCT GTCCACAACGCGCGTGGTTC
Product: DMT family permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 314; Mature: 313
Protein sequence:
>314_residues MPTVSHSTTPLAWLNNQPYLLLTLASLFWAGNIVLARYVAGHVPPLTLSCIRWIGTFLMLWPFARAHLVRDWRTLLASWP LLLVLALTGFAINNALSYWAMQYTQALNGLLIQSSAPLFVALWSLVLFGVRLTAAQFAGIAMSLTGVLVILLRGDLGALA AIQFNRGDLMFAGALLVFGIYSAVMTRRPAVHQLSLISSCTALGALLLLPLAAWEYTSGFVLQLDLLSILTLGYVVVFAS TLAYLSFNRGISLIGPNRAAPFLHLVPLFGSVLAILLLGEELKPFHLAGYALVIAGVIIASRVPLRQPHPTPKP
Sequences:
>Translated_314_residues MPTVSHSTTPLAWLNNQPYLLLTLASLFWAGNIVLARYVAGHVPPLTLSCIRWIGTFLMLWPFARAHLVRDWRTLLASWP LLLVLALTGFAINNALSYWAMQYTQALNGLLIQSSAPLFVALWSLVLFGVRLTAAQFAGIAMSLTGVLVILLRGDLGALA AIQFNRGDLMFAGALLVFGIYSAVMTRRPAVHQLSLISSCTALGALLLLPLAAWEYTSGFVLQLDLLSILTLGYVVVFAS TLAYLSFNRGISLIGPNRAAPFLHLVPLFGSVLAILLLGEELKPFHLAGYALVIAGVIIASRVPLRQPHPTPKP >Mature_313_residues PTVSHSTTPLAWLNNQPYLLLTLASLFWAGNIVLARYVAGHVPPLTLSCIRWIGTFLMLWPFARAHLVRDWRTLLASWPL LLVLALTGFAINNALSYWAMQYTQALNGLLIQSSAPLFVALWSLVLFGVRLTAAQFAGIAMSLTGVLVILLRGDLGALAA IQFNRGDLMFAGALLVFGIYSAVMTRRPAVHQLSLISSCTALGALLLLPLAAWEYTSGFVLQLDLLSILTLGYVVVFAST LAYLSFNRGISLIGPNRAAPFLHLVPLFGSVLAILLLGEELKPFHLAGYALVIAGVIIASRVPLRQPHPTPKP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 DUF6 domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 34034; Mature: 33903
Theoretical pI: Translated: 10.29; Mature: 10.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTVSHSTTPLAWLNNQPYLLLTLASLFWAGNIVLARYVAGHVPPLTLSCIRWIGTFLML CCCCCCCCCCEEEECCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH WPFARAHLVRDWRTLLASWPLLLVLALTGFAINNALSYWAMQYTQALNGLLIQSSAPLFV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHH ALWSLVLFGVRLTAAQFAGIAMSLTGVLVILLRGDLGALAAIQFNRGDLMFAGALLVFGI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHH YSAVMTRRPAVHQLSLISSCTALGALLLLPLAAWEYTSGFVLQLDLLSILTLGYVVVFAS HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHH TLAYLSFNRGISLIGPNRAAPFLHLVPLFGSVLAILLLGEELKPFHLAGYALVIAGVIIA HHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH SRVPLRQPHPTPKP CCCCCCCCCCCCCC >Mature Secondary Structure PTVSHSTTPLAWLNNQPYLLLTLASLFWAGNIVLARYVAGHVPPLTLSCIRWIGTFLML CCCCCCCCCEEEECCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH WPFARAHLVRDWRTLLASWPLLLVLALTGFAINNALSYWAMQYTQALNGLLIQSSAPLFV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHH ALWSLVLFGVRLTAAQFAGIAMSLTGVLVILLRGDLGALAAIQFNRGDLMFAGALLVFGI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHH YSAVMTRRPAVHQLSLISSCTALGALLLLPLAAWEYTSGFVLQLDLLSILTLGYVVVFAS HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHH TLAYLSFNRGISLIGPNRAAPFLHLVPLFGSVLAILLLGEELKPFHLAGYALVIAGVIIA HHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH SRVPLRQPHPTPKP CCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377 [H]