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The map label for this gene is soxD [H]

Identifier: 146342712

GI number: 146342712

Start: 6098600

End: 6098863

Strand: Direct

Name: soxD [H]

Synonym: BRADO5879

Alternate gene names: 146342712

Gene position: 6098600-6098863 (Clockwise)

Preceding gene: 146342711

Following gene: 146342713

Centisome position: 81.79

GC content: 68.56

Gene sequence:

>264_bases
ATGCGAATTCCCTGCCCGTTCTGCGGCGAGCGCGACCTCAGCGAGTTCGCCTATCACGGCGACACCGCGCCGCGCCCTGA
TCCCACCACCGACGATGCGCCGCGACGCTTCTTTGAAGCCACCTATCTGCGCGACAATCCGGCCGGCGAGCATCGCGGGC
TCTGGTATCACGCACAGGGCTGCCGCAGCTGGCTGGTCGTGACACGCAACGTCCGGACCCATCAGGTGCTCGGAGCGGTC
CTGGCGCGGCGAGGCGCGGCATGA

Upstream 100 bases:

>100_bases
ATCCGGTCGCAAGCGCCTATCGCCTCGATCGCTTCGCCGCCGGCGACCTGATCGACGAAAAAGGTCAGGGCGCGCAGCCC
AACCTGCACTGAGGCCAGCC

Downstream 100 bases:

>100_bases
AACCGGTCTCCTACAGGCTCCCCTCCGGCGGCATGATCGATCGGAGCAGGACGATCGGCTTCAGCTTCGACGGCCGCAGC
TATCAAGGCCATCCCGGCGA

Product: sarcosine oxidase subunit delta

Products: NA

Alternate protein names: Sarcosine oxidase subunit D [H]

Number of amino acids: Translated: 87; Mature: 87

Protein sequence:

>87_residues
MRIPCPFCGERDLSEFAYHGDTAPRPDPTTDDAPRRFFEATYLRDNPAGEHRGLWYHAQGCRSWLVVTRNVRTHQVLGAV
LARRGAA

Sequences:

>Translated_87_residues
MRIPCPFCGERDLSEFAYHGDTAPRPDPTTDDAPRRFFEATYLRDNPAGEHRGLWYHAQGCRSWLVVTRNVRTHQVLGAV
LARRGAA
>Mature_87_residues
MRIPCPFCGERDLSEFAYHGDTAPRPDPTTDDAPRRFFEATYLRDNPAGEHRGLWYHAQGCRSWLVVTRNVRTHQVLGAV
LARRGAA

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG4311

COG function: function code E; Sarcosine oxidase delta subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006279 [H]

Pfam domain/function: PF04267 SoxD [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 9882; Mature: 9882

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIPCPFCGERDLSEFAYHGDTAPRPDPTTDDAPRRFFEATYLRDNPAGEHRGLWYHAQG
CCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCC
CRSWLVVTRNVRTHQVLGAVLARRGAA
CCEEEHHCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRIPCPFCGERDLSEFAYHGDTAPRPDPTTDDAPRRFFEATYLRDNPAGEHRGLWYHAQG
CCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCC
CRSWLVVTRNVRTHQVLGAVLARRGAA
CCEEEHHCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]