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The map label for this gene is soxB [H]

Identifier: 146342711

GI number: 146342711

Start: 6097341

End: 6098591

Strand: Direct

Name: soxB [H]

Synonym: BRADO5878

Alternate gene names: 146342711

Gene position: 6097341-6098591 (Clockwise)

Preceding gene: 146342693

Following gene: 146342712

Centisome position: 81.77

GC content: 67.87

Gene sequence:

>1251_bases
ATGCGCTACTCTCTGTTCACTCTCGCGCGCCAAGCGCTGCGCGGCCACCGCGACTGGCAGCCTGCCTGGCGCGACGCCGC
CCCGCAGGCGAGCTACGACATTGTGATCGTGGGCGGCGGCGGTCACGGGCTGGCCTCAGCCTATTACCTCGCCAAACAGC
ATGGCATCCGCCGCGTCGCCGTGGTCGAGAAAGGCTGGATCGGCTCGGGCAATGCCGGCCGCAACACCACGATCATCCGC
TCGAACTACCTGCTGCCCGGCAACGAGCCGTTCTATGAATGGTCGATGAAGCTGTGGGAAGGCCTGGAGCAGGACCTGAA
CTACAATACGATGGTCAGCCAGCGCGGCGTTCTGAACCTCTACCATTCCGACGCGCAACGGGATGCCTTCGCCCGGCGCG
GCAATGCGATGCGGCTGGCCGGCGCCGATGCCGAGCTGCTCGACGCCGATGCCGTCCGGACCATGCTGCCATTGCTGGAT
TTCGACAATGCGCGCTTTCCGGTCAAGGGCGGCCTGCTGCAGCGCCGCGGCGGCACCGCGCGGCACGACGCGGTGGTCTG
GGGCTACGCCCGCGGTGCCAGCGACCTTGGCGTCGACATCATCCAGAATTGCGAGGTCACCGGCTTTGTGCGTGACGGCG
ACCGCATCACCGGCGTCACCACCACGCGGGGCACGATCCAGGCCGGCAAGGTCGGGCTCGCGGTCGCCGGCAGCAGTTCG
CTCGTGGCGCGCCATGCCGGCCTGCGGCTGCCGATCGAAAGCCATGTGCTGCAGGCCTTCGTCTCCGAGGCGATCAAGCC
GCTGATCCCAGGCGTCGTCACCTTCGGTGCCGGCCACTTCTACATCAGTCAGTCCGACAAGGGCGGCCTGGTGTTCGGCG
GCGACATCGACGGCTACAATTCCTACGCCCAGCGCGGCAATCTGCCGACCATCGAGGATGTCTGCGAGGGCGGCATGGCG
CTGATGCCGGCGATCGGCCGCGTGCGCATGCTGCGCTCCTGGGGCGGGCTCGTCGACATGTCGATGGACGGCTCGCCGAT
CATCGACCGCACGCCGCTGGCGGGGCTCTATCTCAACGCCGGCTGGTGCTATGGCGGCTTCAAGGCCACGCCCGGGTCGG
GATGGTGCTTCGCGCATCTGCTCGCGCGCGACGAGCCGCATCCGGTCGCAAGCGCCTATCGCCTCGATCGCTTCGCCGCC
GGCGACCTGATCGACGAAAAAGGTCAGGGCGCGCAGCCCAACCTGCACTGA

Upstream 100 bases:

>100_bases
GCGGGGGTCGTCGCTTCTGGATAGTTTTATGTCGTTTTTGGACATGCGCAAGGATACTTATCAGCGCAATCTCGTACGGA
CAACCCGTGATCGGACGCGC

Downstream 100 bases:

>100_bases
GGCCAGCCATGCGAATTCCCTGCCCGTTCTGCGGCGAGCGCGACCTCAGCGAGTTCGCCTATCACGGCGACACCGCGCCG
CGCCCTGATCCCACCACCGA

Product: sarcosine oxidase subunit beta

Products: NA

Alternate protein names: Sarcosine oxidase subunit B [H]

Number of amino acids: Translated: 416; Mature: 416

Protein sequence:

>416_residues
MRYSLFTLARQALRGHRDWQPAWRDAAPQASYDIVIVGGGGHGLASAYYLAKQHGIRRVAVVEKGWIGSGNAGRNTTIIR
SNYLLPGNEPFYEWSMKLWEGLEQDLNYNTMVSQRGVLNLYHSDAQRDAFARRGNAMRLAGADAELLDADAVRTMLPLLD
FDNARFPVKGGLLQRRGGTARHDAVVWGYARGASDLGVDIIQNCEVTGFVRDGDRITGVTTTRGTIQAGKVGLAVAGSSS
LVARHAGLRLPIESHVLQAFVSEAIKPLIPGVVTFGAGHFYISQSDKGGLVFGGDIDGYNSYAQRGNLPTIEDVCEGGMA
LMPAIGRVRMLRSWGGLVDMSMDGSPIIDRTPLAGLYLNAGWCYGGFKATPGSGWCFAHLLARDEPHPVASAYRLDRFAA
GDLIDEKGQGAQPNLH

Sequences:

>Translated_416_residues
MRYSLFTLARQALRGHRDWQPAWRDAAPQASYDIVIVGGGGHGLASAYYLAKQHGIRRVAVVEKGWIGSGNAGRNTTIIR
SNYLLPGNEPFYEWSMKLWEGLEQDLNYNTMVSQRGVLNLYHSDAQRDAFARRGNAMRLAGADAELLDADAVRTMLPLLD
FDNARFPVKGGLLQRRGGTARHDAVVWGYARGASDLGVDIIQNCEVTGFVRDGDRITGVTTTRGTIQAGKVGLAVAGSSS
LVARHAGLRLPIESHVLQAFVSEAIKPLIPGVVTFGAGHFYISQSDKGGLVFGGDIDGYNSYAQRGNLPTIEDVCEGGMA
LMPAIGRVRMLRSWGGLVDMSMDGSPIIDRTPLAGLYLNAGWCYGGFKATPGSGWCFAHLLARDEPHPVASAYRLDRFAA
GDLIDEKGQGAQPNLH
>Mature_416_residues
MRYSLFTLARQALRGHRDWQPAWRDAAPQASYDIVIVGGGGHGLASAYYLAKQHGIRRVAVVEKGWIGSGNAGRNTTIIR
SNYLLPGNEPFYEWSMKLWEGLEQDLNYNTMVSQRGVLNLYHSDAQRDAFARRGNAMRLAGADAELLDADAVRTMLPLLD
FDNARFPVKGGLLQRRGGTARHDAVVWGYARGASDLGVDIIQNCEVTGFVRDGDRITGVTTTRGTIQAGKVGLAVAGSSS
LVARHAGLRLPIESHVLQAFVSEAIKPLIPGVVTFGAGHFYISQSDKGGLVFGGDIDGYNSYAQRGNLPTIEDVCEGGMA
LMPAIGRVRMLRSWGGLVDMSMDGSPIIDRTPLAGLYLNAGWCYGGFKATPGSGWCFAHLLARDEPHPVASAYRLDRFAA
GDLIDEKGQGAQPNLH

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the soxB family [H]

Homologues:

Organism=Homo sapiens, GI197927446, Length=388, Percent_Identity=22.9381443298969, Blast_Score=79, Evalue=8e-15,
Organism=Homo sapiens, GI21361378, Length=388, Percent_Identity=22.9381443298969, Blast_Score=79, Evalue=8e-15,
Organism=Homo sapiens, GI24797151, Length=352, Percent_Identity=23.5795454545455, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI20130091, Length=399, Percent_Identity=23.0576441102757, Blast_Score=74, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR006278 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 44960; Mature: 44960

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYSLFTLARQALRGHRDWQPAWRDAAPQASYDIVIVGGGGHGLASAYYLAKQHGIRRVA
CCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEE
VVEKGWIGSGNAGRNTTIIRSNYLLPGNEPFYEWSMKLWEGLEQDLNYNTMVSQRGVLNL
EEECCCCCCCCCCCCEEEEEECEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCEEEE
YHSDAQRDAFARRGNAMRLAGADAELLDADAVRTMLPLLDFDNARFPVKGGLLQRRGGTA
ECCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCC
RHDAVVWGYARGASDLGVDIIQNCEVTGFVRDGDRITGVTTTRGTIQAGKVGLAVAGSSS
CCCEEEEEECCCCCCCCHHHHHCCCEEEEEECCCEEEEEEECCCEEEECCEEEEEECCCH
LVARHAGLRLPIESHVLQAFVSEAIKPLIPGVVTFGAGHFYISQSDKGGLVFGGDIDGYN
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEECCCCCEEECCCCCCCH
SYAQRGNLPTIEDVCEGGMALMPAIGRVRMLRSWGGLVDMSMDGSPIIDRTPLAGLYLNA
HHHHCCCCCCHHHHHCCCEEEHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEEEEEC
GWCYGGFKATPGSGWCFAHLLARDEPHPVASAYRLDRFAAGDLIDEKGQGAQPNLH
EEEECCEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRYSLFTLARQALRGHRDWQPAWRDAAPQASYDIVIVGGGGHGLASAYYLAKQHGIRRVA
CCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEE
VVEKGWIGSGNAGRNTTIIRSNYLLPGNEPFYEWSMKLWEGLEQDLNYNTMVSQRGVLNL
EEECCCCCCCCCCCCEEEEEECEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCEEEE
YHSDAQRDAFARRGNAMRLAGADAELLDADAVRTMLPLLDFDNARFPVKGGLLQRRGGTA
ECCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCC
RHDAVVWGYARGASDLGVDIIQNCEVTGFVRDGDRITGVTTTRGTIQAGKVGLAVAGSSS
CCCEEEEEECCCCCCCCHHHHHCCCEEEEEECCCEEEEEEECCCEEEECCEEEEEECCCH
LVARHAGLRLPIESHVLQAFVSEAIKPLIPGVVTFGAGHFYISQSDKGGLVFGGDIDGYN
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEECCCCCEEECCCCCCCH
SYAQRGNLPTIEDVCEGGMALMPAIGRVRMLRSWGGLVDMSMDGSPIIDRTPLAGLYLNA
HHHHCCCCCCHHHHHCCCEEEHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEEEEEC
GWCYGGFKATPGSGWCFAHLLARDEPHPVASAYRLDRFAAGDLIDEKGQGAQPNLH
EEEECCEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]