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The map label for this gene is erfK [H]

Identifier: 146342579

GI number: 146342579

Start: 5938177

End: 5939418

Strand: Reverse

Name: erfK [H]

Synonym: BRADO5742

Alternate gene names: 146342579

Gene position: 5939418-5938177 (Counterclockwise)

Preceding gene: 146342581

Following gene: 146342576

Centisome position: 79.65

GC content: 69.16

Gene sequence:

>1242_bases
ATGATGATCAGACAAATCCTGACGGTTTGCGCGGTCGCGGCAGCGGGCGTGGCGGCAACTTCGTCTGTCGAGGCACAGCA
GGTCTATCAGACGGCGCCCGGAGCGTATTCACCCGCGCCGACGCCTTACCCGGCAGATGTGCGCGGCCAGGGTCCGGATT
TCGACGCGCTCGACGACGAGGACACGCCAGGCAATTCGGCCGCGCTGCCGCCGCCGGGGCCGGTGATATCGCCGGACGAT
CCGCGCTATGGCCGTCCAGCCCATGCTCCAGTTTATGGCGCCGGGCCGACCGGGCCGATTCTATCGCCCGATGATCCGCG
CTACGGACGTCCGGCCGGTGCGCCGGTCTATGGCGCCGGGCAGAACGGTCCCGTGATGTCTCCGGATGATCCGCGTTACG
GTCGCCCGGCCGGTCCACCGCCGGTGATCTATGCTGATCGTCCGGCCGCGGGCCAGCAGGCCTATGGTGGCACGTACGGC
AATGCCGCGCCCGGCGTTGACGCCGGTGCGCCGCGCCCGCCCGGAGCCGTCGGTGGTGCATCCTCGGTGCCGGGCACGGC
CCAGGCTCCGGCCGGCAATCGGCCGATGACGGTCGCGGCGCTTCCCCCTGAAGAGCAGCCCGACGCTGCGCCAGCGCCAC
TGCCGCCGAATCTGCGCCGCCAGGAGGTCGACTTCGTCACCAAGGAGCCCCCGGGGACGATCGTGGTCGATACGCCGAAC
ACCTACCTCTATCTGGTGCTCGGCAATGGCCGGGCGCTGCGCTACGGCGTCCGTGTGGGCCGCGAAGGCTTTACCTGGAC
GGGCGTGCAGAAGATCACGAAGAAGACCGAGTGGCCGGACTGGTATCCGCCAAGCGAGATGATCGAGCGCCAGCCCTATC
TGCCGCGCTTCATGGCCGGCGGCGAGGGCAACCCGCTCGGCGCCCGAGCGATGTATCTCGGCTCGACTGTGTATCGCATT
CACGGCACCAACCAGCCCTCGACAATCGGCAAGTTCGTCTCGTCCGGCTGCATCGGGATGCTGAACGACGACGTCTCCGA
CCTGTTCGACCGCGTCAAGGTCGGCACCCGTGTCGTGGTCATGCCGGGCGGCGCGCCGGCGGGATCCAACAAGAACATGG
CGGCCGCAGCCAACGGCGCCGCGATACCGGCCGCTCAGGCTCCGGTTCAGGCGCAAGCGAATGTCCCGGCCGCCCAGCCG
GCCACCATGCAGCCACTGCCGCCGCCGGTCACCATTCGCTGA

Upstream 100 bases:

>100_bases
TGGGACCGCACTGGGCCGATTTGTCTTGAATGCGCCGCTATCTTCGGCCATCTGGCACAGCAGAGATCCCAATCGGCGGC
TTGGGGATACTGCAAGGGCA

Downstream 100 bases:

>100_bases
ACAGGCGCTGATCGATCTCGCAACACCCTCCTCGCGGAGGGTGTTTTGCTTTTGGGAGCCGATCAGGCCAGCCGCCGCGG
CGGCTCGGCGCCGTCAAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MMIRQILTVCAVAAAGVAATSSVEAQQVYQTAPGAYSPAPTPYPADVRGQGPDFDALDDEDTPGNSAALPPPGPVISPDD
PRYGRPAHAPVYGAGPTGPILSPDDPRYGRPAGAPVYGAGQNGPVMSPDDPRYGRPAGPPPVIYADRPAAGQQAYGGTYG
NAAPGVDAGAPRPPGAVGGASSVPGTAQAPAGNRPMTVAALPPEEQPDAAPAPLPPNLRRQEVDFVTKEPPGTIVVDTPN
TYLYLVLGNGRALRYGVRVGREGFTWTGVQKITKKTEWPDWYPPSEMIERQPYLPRFMAGGEGNPLGARAMYLGSTVYRI
HGTNQPSTIGKFVSSGCIGMLNDDVSDLFDRVKVGTRVVVMPGGAPAGSNKNMAAAANGAAIPAAQAPVQAQANVPAAQP
ATMQPLPPPVTIR

Sequences:

>Translated_413_residues
MMIRQILTVCAVAAAGVAATSSVEAQQVYQTAPGAYSPAPTPYPADVRGQGPDFDALDDEDTPGNSAALPPPGPVISPDD
PRYGRPAHAPVYGAGPTGPILSPDDPRYGRPAGAPVYGAGQNGPVMSPDDPRYGRPAGPPPVIYADRPAAGQQAYGGTYG
NAAPGVDAGAPRPPGAVGGASSVPGTAQAPAGNRPMTVAALPPEEQPDAAPAPLPPNLRRQEVDFVTKEPPGTIVVDTPN
TYLYLVLGNGRALRYGVRVGREGFTWTGVQKITKKTEWPDWYPPSEMIERQPYLPRFMAGGEGNPLGARAMYLGSTVYRI
HGTNQPSTIGKFVSSGCIGMLNDDVSDLFDRVKVGTRVVVMPGGAPAGSNKNMAAAANGAAIPAAQAPVQAQANVPAAQP
ATMQPLPPPVTIR
>Mature_413_residues
MMIRQILTVCAVAAAGVAATSSVEAQQVYQTAPGAYSPAPTPYPADVRGQGPDFDALDDEDTPGNSAALPPPGPVISPDD
PRYGRPAHAPVYGAGPTGPILSPDDPRYGRPAGAPVYGAGQNGPVMSPDDPRYGRPAGPPPVIYADRPAAGQQAYGGTYG
NAAPGVDAGAPRPPGAVGGASSVPGTAQAPAGNRPMTVAALPPEEQPDAAPAPLPPNLRRQEVDFVTKEPPGTIVVDTPN
TYLYLVLGNGRALRYGVRVGREGFTWTGVQKITKKTEWPDWYPPSEMIERQPYLPRFMAGGEGNPLGARAMYLGSTVYRI
HGTNQPSTIGKFVSSGCIGMLNDDVSDLFDRVKVGTRVVVMPGGAPAGSNKNMAAAANGAAIPAAQAPVQAQANVPAAQP
ATMQPLPPPVTIR

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1788299, Length=97, Percent_Identity=44.3298969072165, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787040, Length=136, Percent_Identity=34.5588235294118, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1787356, Length=143, Percent_Identity=30.7692307692308, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 42542; Mature: 42542

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMIRQILTVCAVAAAGVAATSSVEAQQVYQTAPGAYSPAPTPYPADVRGQGPDFDALDDE
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DTPGNSAALPPPGPVISPDDPRYGRPAHAPVYGAGPTGPILSPDDPRYGRPAGAPVYGAG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEECC
QNGPVMSPDDPRYGRPAGPPPVIYADRPAAGQQAYGGTYGNAAPGVDAGAPRPPGAVGGA
CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SSVPGTAQAPAGNRPMTVAALPPEEQPDAAPAPLPPNLRRQEVDFVTKEPPGTIVVDTPN
CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHCCEEECCCCCEEEEECCC
TYLYLVLGNGRALRYGVRVGREGFTWTGVQKITKKTEWPDWYPPSEMIERQPYLPRFMAG
CEEEEEECCCCEEEEEEEECCCCCEEHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHCC
GEGNPLGARAMYLGSTVYRIHGTNQPSTIGKFVSSGCIGMLNDDVSDLFDRVKVGTRVVV
CCCCCCCCEEEEECCEEEEEECCCCCHHHHHHHHCCCEEECCCCHHHHHHHHHHCCEEEE
MPGGAPAGSNKNMAAAANGAAIPAAQAPVQAQANVPAAQPATMQPLPPPVTIR
ECCCCCCCCCCCEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MMIRQILTVCAVAAAGVAATSSVEAQQVYQTAPGAYSPAPTPYPADVRGQGPDFDALDDE
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DTPGNSAALPPPGPVISPDDPRYGRPAHAPVYGAGPTGPILSPDDPRYGRPAGAPVYGAG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEECC
QNGPVMSPDDPRYGRPAGPPPVIYADRPAAGQQAYGGTYGNAAPGVDAGAPRPPGAVGGA
CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SSVPGTAQAPAGNRPMTVAALPPEEQPDAAPAPLPPNLRRQEVDFVTKEPPGTIVVDTPN
CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHCCEEECCCCCEEEEECCC
TYLYLVLGNGRALRYGVRVGREGFTWTGVQKITKKTEWPDWYPPSEMIERQPYLPRFMAG
CEEEEEECCCCEEEEEEEECCCCCEEHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHCC
GEGNPLGARAMYLGSTVYRIHGTNQPSTIGKFVSSGCIGMLNDDVSDLFDRVKVGTRVVV
CCCCCCCCEEEEECCEEEEEECCCCCHHHHHHHHCCCEEECCCCHHHHHHHHHHCCEEEE
MPGGAPAGSNKNMAAAANGAAIPAAQAPVQAQANVPAAQPATMQPLPPPVTIR
ECCCCCCCCCCCEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7592411; 9097040; 9278503; 9298646 [H]