Click here to switch to the map view.

The map label for this gene is psd [H]

Identifier: 146342531

GI number: 146342531

Start: 5895298

End: 5896173

Strand: Reverse

Name: psd [H]

Synonym: BRADO5693

Alternate gene names: 146342531

Gene position: 5896173-5895298 (Counterclockwise)

Preceding gene: 146342533

Following gene: 146342530

Centisome position: 79.07

GC content: 63.81

Gene sequence:

>876_bases
ATGACAGTCAAAAGCCTGATCGCTTCCTTCACCCAACAGGAAGATCTTAACTTCCTGCTCACCAACCGCGTGCCGCGCGC
CGCGCTGACCCGCTTCATGGGCTGGTTCTCCAAGATCGAGAATCCGCTGGTGAAGGACACATCCATCGCGCTGTGGAAGC
TGTTCTCCGACCTCGACCTCTCCGAGGCCAAGGAGAGCCGGTTCAAGAGCCTGCATGCCTGCTTCACCCGCGAATTGAAG
CCGGGCTTGAGGCCGTTCGATCCCGATCCCGCCGTTGTGACGACGCCCTCTGACGGTATCATCGGCGCGCACGGCCAAAT
CCGCGACGGCGAATTGTATCAGATCAAGGGCGCGCCGTACTCATTGAAGGATCTGGTCGCCGATCCCGCCGTCGTCGAGA
CCCACCGCAACGGCAGCTTCGTCACCATCCGGCTGACGTCGAGCATGTATCACCGCTTCCACGCGCCGGCGGATATGACG
CTGGAGCATGTCAGCCTGATCCATGGCGACGTCTGGAACGTCAATCCGATCGCGTTGAAGCGCGTCGAGCGGCTGTTCTG
CAAGAACGAGCGCGCGGTGATCCGCACGCATCTTGCCACGGGCGAGCCGTTCACGATCGTGCCGGTCGCCGCGATCCTGG
TCGCGAGCATCCGGTTGCACGCGCTCGACCGCGTGTTGAATGCGCAGACCGAACGGCCGCTGACCTATGTCTGTCACGAC
GCGGTGAAGAAGGGCGACGAGCTCGGCTGGTTCGAGCACGGCTCGACCATCATCCTGCTCGCGCCCGGCGACTTTACCTT
CGCTCCGGGAATCGCGGAGGGCGCGCGCGTCAGGGCCGGTCAGCCACTGTGGCGCAGGCGCGTCGCTGCCGGCTGA

Upstream 100 bases:

>100_bases
GCGACGGCGGCCGTCACGGCAGCGCCAACGGCGAGCGATACATAAGGAATCGAGGTTTCCATCATGTCCAAAAGCGCTAA
CCCCACCTGCTGACAGATTC

Downstream 100 bases:

>100_bases
ATGTGACGGGCGCACGACGGGTATCTCGATTTCCCGTTGCGCGTCGCCATATCCTGGCGTTGAACTGGCGAATCGCATGG
GTTGCAACCCGTTATGTGGG

Product: putative phosphatidylserine decarboxylase (psd-like)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 290

Protein sequence:

>291_residues
MTVKSLIASFTQQEDLNFLLTNRVPRAALTRFMGWFSKIENPLVKDTSIALWKLFSDLDLSEAKESRFKSLHACFTRELK
PGLRPFDPDPAVVTTPSDGIIGAHGQIRDGELYQIKGAPYSLKDLVADPAVVETHRNGSFVTIRLTSSMYHRFHAPADMT
LEHVSLIHGDVWNVNPIALKRVERLFCKNERAVIRTHLATGEPFTIVPVAAILVASIRLHALDRVLNAQTERPLTYVCHD
AVKKGDELGWFEHGSTIILLAPGDFTFAPGIAEGARVRAGQPLWRRRVAAG

Sequences:

>Translated_291_residues
MTVKSLIASFTQQEDLNFLLTNRVPRAALTRFMGWFSKIENPLVKDTSIALWKLFSDLDLSEAKESRFKSLHACFTRELK
PGLRPFDPDPAVVTTPSDGIIGAHGQIRDGELYQIKGAPYSLKDLVADPAVVETHRNGSFVTIRLTSSMYHRFHAPADMT
LEHVSLIHGDVWNVNPIALKRVERLFCKNERAVIRTHLATGEPFTIVPVAAILVASIRLHALDRVLNAQTERPLTYVCHD
AVKKGDELGWFEHGSTIILLAPGDFTFAPGIAEGARVRAGQPLWRRRVAAG
>Mature_290_residues
TVKSLIASFTQQEDLNFLLTNRVPRAALTRFMGWFSKIENPLVKDTSIALWKLFSDLDLSEAKESRFKSLHACFTRELKP
GLRPFDPDPAVVTTPSDGIIGAHGQIRDGELYQIKGAPYSLKDLVADPAVVETHRNGSFVTIRLTSSMYHRFHAPADMTL
EHVSLIHGDVWNVNPIALKRVERLFCKNERAVIRTHLATGEPFTIVPVAAILVASIRLHALDRVLNAQTERPLTYVCHDA
VKKGDELGWFEHGSTIILLAPGDFTFAPGIAEGARVRAGQPLWRRRVAAG

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=302, Percent_Identity=31.1258278145695, Blast_Score=111, Evalue=1e-24,
Organism=Escherichia coli, GI1790604, Length=277, Percent_Identity=29.9638989169675, Blast_Score=128, Evalue=5e-31,
Organism=Caenorhabditis elegans, GI71980843, Length=279, Percent_Identity=28.3154121863799, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI71980840, Length=279, Percent_Identity=28.3154121863799, Blast_Score=88, Evalue=5e-18,
Organism=Saccharomyces cerevisiae, GI6321609, Length=229, Percent_Identity=28.82096069869, Blast_Score=99, Evalue=9e-22,
Organism=Saccharomyces cerevisiae, GI6324160, Length=161, Percent_Identity=32.2981366459627, Blast_Score=71, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24649526, Length=303, Percent_Identity=28.3828382838284, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24649528, Length=303, Percent_Identity=28.3828382838284, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24649524, Length=303, Percent_Identity=28.3828382838284, Blast_Score=89, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 32381; Mature: 32249

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVKSLIASFTQQEDLNFLLTNRVPRAALTRFMGWFSKIENPLVKDTSIALWKLFSDLDL
CCHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCH
SEAKESRFKSLHACFTRELKPGLRPFDPDPAVVTTPSDGIIGAHGQIRDGELYQIKGAPY
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCEEEECCCCC
SLKDLVADPAVVETHRNGSFVTIRLTSSMYHRFHAPADMTLEHVSLIHGDVWNVNPIALK
CHHHHHCCCHHEEECCCCCEEEEEECHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHH
RVERLFCKNERAVIRTHLATGEPFTIVPVAAILVASIRLHALDRVLNAQTERPLTYVCHD
HHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
AVKKGDELGWFEHGSTIILLAPGDFTFAPGIAEGARVRAGQPLWRRRVAAG
HHHCCCCCCEEECCCEEEEECCCCCCCCCCCCCCCEECCCCHHHHHHHCCC
>Mature Secondary Structure 
TVKSLIASFTQQEDLNFLLTNRVPRAALTRFMGWFSKIENPLVKDTSIALWKLFSDLDL
CHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCH
SEAKESRFKSLHACFTRELKPGLRPFDPDPAVVTTPSDGIIGAHGQIRDGELYQIKGAPY
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCEEEECCCCC
SLKDLVADPAVVETHRNGSFVTIRLTSSMYHRFHAPADMTLEHVSLIHGDVWNVNPIALK
CHHHHHCCCHHEEECCCCCEEEEEECHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHH
RVERLFCKNERAVIRTHLATGEPFTIVPVAAILVASIRLHALDRVLNAQTERPLTYVCHD
HHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
AVKKGDELGWFEHGSTIILLAPGDFTFAPGIAEGARVRAGQPLWRRRVAAG
HHHCCCCCCEEECCCEEEEECCCCCCCCCCCCCCCEECCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA