Click here to switch to the map view.

The map label for this gene is yagS [H]

Identifier: 146342528

GI number: 146342528

Start: 5892495

End: 5893511

Strand: Reverse

Name: yagS [H]

Synonym: BRADO5690

Alternate gene names: 146342528

Gene position: 5893511-5892495 (Counterclockwise)

Preceding gene: 146342529

Following gene: 146342527

Centisome position: 79.04

GC content: 67.65

Gene sequence:

>1017_bases
ATGAACAGCTTTGACTACGCACGCGCCTGCGACGTTGCGGAGGCGGTCAGGCTGAAGGCGGGAGCACCCGACGCGAGATT
CATCGCCGGCGGCACCAACCTGATCGACCTGATGAAGTATCATGTCGAACAGCCGCGCCGGCTGATCGACATCAGCCGCC
TGCCGCTCAACGCGGTGGAGGAGACCAGCAACGGCGGCGTCAAGATCGGCGCGCTGGTGCCGAACAGCACGCTGGCCTAT
CACCCGATCATCGAGAGCCGCTATCCGCTGCTGGCGAGCGCAATCCTCGCCGGTGCCTCGGCGCAGTTGCGCAACATGGC
CTCGACCGGCGGCAATCTGCTGCAGCGGACCCGCTGCGCGTATTTCTACGATGTCGCCACGCCCTGCAACAAGCGCGCGC
CGGGCGCGGGCTGCTCGGCCATCGACGGCCTCAATCGCAATCACGCGATCCTCGGCACCAGCACGTCCTGCATCGCGACC
CATCCGTCCGACATGTGCGTGGCTCTGGCCGCGCTGGAAGCGAGGGTTCACGTCGTCGGTGCGCAAGGCGAGCGTATGAT
TGCCTTCGGCGATTTCCACCGGCTGCCTGGCGGGCGGCCAGATCTCGACAACACGCTGCGCGCCGACGAGATCATCACCG
CGATCGAGCTGCCGGCACGGGGCTTCGCCGCCAACTCGAGCTATCTCAAGATCCGCGATCGGCTTTCTTACGCCTTTGCG
CTGGTCTCCGTCGCTGCAGCGCTCGAGCTGGACAACGGCCATATCCGTGGGGCCCGGCTGGCGCTCGGCGGCGTCGCCCA
CAAACCGTGGCGGAACGAGGCCGCGGAAGCGGCGCTGCGCGGCCAGGCGCCGGAGCGCGTCTCCTTCGAGCGCGCGGCCG
ACATCCTGCTCCAGGAGGCCAGGCCGCACCGGCACAACGCCTTCAAGCTCCCGCTCGCCCGCCGCGCTATCGTCAGGACC
CTGACGCAGGCGGCCAATGGCACGCCGCAGATCCAATCCATCAAGTCCATCCGGTGA

Upstream 100 bases:

>100_bases
GCGAGCTGATGAGCGGCAACATCTGCCGCTGCGGCGCCTATCCGAACATCGTCGGCGCCATCGAGCAGGCGATGACCAAA
CAGGCCATGGGAGGCGGCCA

Downstream 100 bases:

>100_bases
TCTCATGACAGCTCACATCGGCACCGCCACCTCCCGCGTCGACGGCCGCGCCAAGGTCACGGGTTCAGCCAAATACGCCG
CCGAGTTTTCCGCGCCCGAT

Product: putative xanthine dehydrogenase (YagS-like), FAD binding subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MNSFDYARACDVAEAVRLKAGAPDARFIAGGTNLIDLMKYHVEQPRRLIDISRLPLNAVEETSNGGVKIGALVPNSTLAY
HPIIESRYPLLASAILAGASAQLRNMASTGGNLLQRTRCAYFYDVATPCNKRAPGAGCSAIDGLNRNHAILGTSTSCIAT
HPSDMCVALAALEARVHVVGAQGERMIAFGDFHRLPGGRPDLDNTLRADEIITAIELPARGFAANSSYLKIRDRLSYAFA
LVSVAAALELDNGHIRGARLALGGVAHKPWRNEAAEAALRGQAPERVSFERAADILLQEARPHRHNAFKLPLARRAIVRT
LTQAANGTPQIQSIKSIR

Sequences:

>Translated_338_residues
MNSFDYARACDVAEAVRLKAGAPDARFIAGGTNLIDLMKYHVEQPRRLIDISRLPLNAVEETSNGGVKIGALVPNSTLAY
HPIIESRYPLLASAILAGASAQLRNMASTGGNLLQRTRCAYFYDVATPCNKRAPGAGCSAIDGLNRNHAILGTSTSCIAT
HPSDMCVALAALEARVHVVGAQGERMIAFGDFHRLPGGRPDLDNTLRADEIITAIELPARGFAANSSYLKIRDRLSYAFA
LVSVAAALELDNGHIRGARLALGGVAHKPWRNEAAEAALRGQAPERVSFERAADILLQEARPHRHNAFKLPLARRAIVRT
LTQAANGTPQIQSIKSIR
>Mature_338_residues
MNSFDYARACDVAEAVRLKAGAPDARFIAGGTNLIDLMKYHVEQPRRLIDISRLPLNAVEETSNGGVKIGALVPNSTLAY
HPIIESRYPLLASAILAGASAQLRNMASTGGNLLQRTRCAYFYDVATPCNKRAPGAGCSAIDGLNRNHAILGTSTSCIAT
HPSDMCVALAALEARVHVVGAQGERMIAFGDFHRLPGGRPDLDNTLRADEIITAIELPARGFAANSSYLKIRDRLSYAFA
LVSVAAALELDNGHIRGARLALGGVAHKPWRNEAAEAALRGQAPERVSFERAADILLQEARPHRHNAFKLPLARRAIVRT
LTQAANGTPQIQSIKSIR

Specific function: Unknown

COG id: COG1319

COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Escherichia coli, GI1786479, Length=325, Percent_Identity=49.2307692307692, Blast_Score=297, Evalue=6e-82,
Organism=Escherichia coli, GI1789231, Length=330, Percent_Identity=25.1515151515152, Blast_Score=92, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005107
- InterPro:   IPR016169
- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR002346 [H]

Pfam domain/function: PF03450 CO_deh_flav_C; PF00941 FAD_binding_5 [H]

EC number: =1.17.1.4 [H]

Molecular weight: Translated: 36310; Mature: 36310

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSFDYARACDVAEAVRLKAGAPDARFIAGGTNLIDLMKYHVEQPRRLIDISRLPLNAVE
CCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCHHHHHHHCCCCHHHH
ETSNGGVKIGALVPNSTLAYHPIIESRYPLLASAILAGASAQLRNMASTGGNLLQRTRCA
HCCCCCEEEEEECCCCCEEECCHHHCCCHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHH
YFYDVATPCNKRAPGAGCSAIDGLNRNHAILGTSTSCIATHPSDMCVALAALEARVHVVG
EEEECCCCCCCCCCCCCCHHHCCCCCCCEEEECCCCEEEECCHHHHHHHHHHHHEEEEEE
AQGERMIAFGDFHRLPGGRPDLDNTLRADEIITAIELPARGFAANSSYLKIRDRLSYAFA
CCCCEEEEEECHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHH
LVSVAAALELDNGHIRGARLALGGVAHKPWRNEAAEAALRGQAPERVSFERAADILLQEA
HHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHC
RPHRHNAFKLPLARRAIVRTLTQAANGTPQIQSIKSIR
CCCCCCCEECCHHHHHHHHHHHHHCCCCCHHHHHHCCC
>Mature Secondary Structure
MNSFDYARACDVAEAVRLKAGAPDARFIAGGTNLIDLMKYHVEQPRRLIDISRLPLNAVE
CCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCHHHHHHHCCCCHHHH
ETSNGGVKIGALVPNSTLAYHPIIESRYPLLASAILAGASAQLRNMASTGGNLLQRTRCA
HCCCCCEEEEEECCCCCEEECCHHHCCCHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHH
YFYDVATPCNKRAPGAGCSAIDGLNRNHAILGTSTSCIATHPSDMCVALAALEARVHVVG
EEEECCCCCCCCCCCCCCHHHCCCCCCCEEEECCCCEEEECCHHHHHHHHHHHHEEEEEE
AQGERMIAFGDFHRLPGGRPDLDNTLRADEIITAIELPARGFAANSSYLKIRDRLSYAFA
CCCCEEEEEECHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHH
LVSVAAALELDNGHIRGARLALGGVAHKPWRNEAAEAALRGQAPERVSFERAADILLQEA
HHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHC
RPHRHNAFKLPLARRAIVRTLTQAANGTPQIQSIKSIR
CCCCCCCEECCHHHHHHHHHHHHHCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]