| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is 146342210
Identifier: 146342210
GI number: 146342210
Start: 5568739
End: 5569746
Strand: Reverse
Name: 146342210
Synonym: BRADO5362
Alternate gene names: NA
Gene position: 5569746-5568739 (Counterclockwise)
Preceding gene: 146342211
Following gene: 146342209
Centisome position: 74.7
GC content: 61.31
Gene sequence:
>1008_bases ATGAAGGTCATCCGCCTCGTTCTTGCGCTGCTCGCGCTGTTCGTTCTGGCGCCGTCGCAGCCCGCCAAGGCCGCTGACGT CATCTGCTACAATTGTCCGCCGGAATGGGCCGACTGGGCGTCGATGCTGAAGGCGATCAAGACCGATCTCGGCTACGACA TCCCGCACGACAACAAGAACTCCGGCCAGGCGCTGGCGCAGATCCTCGCCGAGAAGGCCAATCCGGTCGGCGACATCGGC TATTTCGGCGTGACTTTCGGTATGAAGGCCAAGGCGCAGGACGCGCTGGAGCCGTACAAGCCCGTCAACTGGGATCAGGT CCCGGCCGGCCTGAAGGATGCCGACGGCTACTGGACCACGATCCATTCGGGCACGCTCGGGCTGTTCGTGAACAAGGATG CATTGGGCGGCAAGCCGATACCGGCGTGCTGGAAGGATCTGCTCAAGCCCGACTATAAAGGCATGGTCGGCTATCTCGAT CCGAGTTCGGCTGCGGTGGGCTATGTCGGCGCCGTGGCCGTCAATCTCGCGCTCGGCGGCTCGCAAACCAATTTCGATCC CGCGGTCAGCTTCCTCAAAGATCTGCGCAGGAACGATCCGATCGTGCCGAAGCAGACCTCCTATGCGCGCGTGGTCTCGG GCGAGATCCCGATCCTGTTCGACTACGACTTCAATGCCTATCGCGCGAAATATACCGAGAAGGGCAATTTCGAGTTTGTC ATTCCCTGCGAAGGCTCGGTGGTCTTCCCCTACGTCGTCGGTCTCGTAAAGAACGCGCCCGACAAGGACAAGGCGAAGAA GGTCATGGACTATCTCTTGTCCGACAAGGGCCAGGCGATCTGGACCAATGCGTATTTGCGTCCGGCCCGTCCGATCGAGC TGCCGGAAGCCGTCAAGAGCAAGTTCCTGCCGGACAGCGACTACGCCCGCGCCAAAAGCGTCAACTGGGGCGACATGGAG GCCGCGCAGAAGGGCTTCGTCGACCGCTATCTGTCCGAAGTCCGCTAA
Upstream 100 bases:
>100_bases CGCGCGTGTGTGCACTTCACGCGCTGTCGCAAATCTTTCATCTGCCGGCCGTAAGGGGCTCCGGAACTGGCCGTGATGCC AGGCATACGGAGTTTCATTC
Downstream 100 bases:
>100_bases GGGAGTCGCGTGCCCCGCTGGCCAACAGCCGACGGGGCACGCTCGAGATCATGTCGCACAAATCCTTCGTCTGGGCGTGT CTGTTGCCATTGGCGGCCGT
Product: iron ABC transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 335; Mature: 335
Protein sequence:
>335_residues MKVIRLVLALLALFVLAPSQPAKAADVICYNCPPEWADWASMLKAIKTDLGYDIPHDNKNSGQALAQILAEKANPVGDIG YFGVTFGMKAKAQDALEPYKPVNWDQVPAGLKDADGYWTTIHSGTLGLFVNKDALGGKPIPACWKDLLKPDYKGMVGYLD PSSAAVGYVGAVAVNLALGGSQTNFDPAVSFLKDLRRNDPIVPKQTSYARVVSGEIPILFDYDFNAYRAKYTEKGNFEFV IPCEGSVVFPYVVGLVKNAPDKDKAKKVMDYLLSDKGQAIWTNAYLRPARPIELPEAVKSKFLPDSDYARAKSVNWGDME AAQKGFVDRYLSEVR
Sequences:
>Translated_335_residues MKVIRLVLALLALFVLAPSQPAKAADVICYNCPPEWADWASMLKAIKTDLGYDIPHDNKNSGQALAQILAEKANPVGDIG YFGVTFGMKAKAQDALEPYKPVNWDQVPAGLKDADGYWTTIHSGTLGLFVNKDALGGKPIPACWKDLLKPDYKGMVGYLD PSSAAVGYVGAVAVNLALGGSQTNFDPAVSFLKDLRRNDPIVPKQTSYARVVSGEIPILFDYDFNAYRAKYTEKGNFEFV IPCEGSVVFPYVVGLVKNAPDKDKAKKVMDYLLSDKGQAIWTNAYLRPARPIELPEAVKSKFLPDSDYARAKSVNWGDME AAQKGFVDRYLSEVR >Mature_335_residues MKVIRLVLALLALFVLAPSQPAKAADVICYNCPPEWADWASMLKAIKTDLGYDIPHDNKNSGQALAQILAEKANPVGDIG YFGVTFGMKAKAQDALEPYKPVNWDQVPAGLKDADGYWTTIHSGTLGLFVNKDALGGKPIPACWKDLLKPDYKGMVGYLD PSSAAVGYVGAVAVNLALGGSQTNFDPAVSFLKDLRRNDPIVPKQTSYARVVSGEIPILFDYDFNAYRAKYTEKGNFEFV IPCEGSVVFPYVVGLVKNAPDKDKAKKVMDYLLSDKGQAIWTNAYLRPARPIELPEAVKSKFLPDSDYARAKSVNWGDME AAQKGFVDRYLSEVR
Specific function: Unknown
COG id: COG1840
COG function: function code P; ABC-type Fe3+ transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 36726; Mature: 36726
Theoretical pI: Translated: 7.89; Mature: 7.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVIRLVLALLALFVLAPSQPAKAADVICYNCPPEWADWASMLKAIKTDLGYDIPHDNKN CHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCC SGQALAQILAEKANPVGDIGYFGVTFGMKAKAQDALEPYKPVNWDQVPAGLKDADGYWTT HHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEE IHSGTLGLFVNKDALGGKPIPACWKDLLKPDYKGMVGYLDPSSAAVGYVGAVAVNLALGG EECCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHEEEEECC SQTNFDPAVSFLKDLRRNDPIVPKQTSYARVVSGEIPILFDYDFNAYRAKYTEKGNFEFV CCCCHHHHHHHHHHHHHCCCCCCCCCCHHEEECCCCCEEEECCCCHHHHEECCCCCEEEE IPCEGSVVFPYVVGLVKNAPDKDKAKKVMDYLLSDKGQAIWTNAYLRPARPIELPEAVKS EECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHH KFLPDSDYARAKSVNWGDMEAAQKGFVDRYLSEVR HCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKVIRLVLALLALFVLAPSQPAKAADVICYNCPPEWADWASMLKAIKTDLGYDIPHDNKN CHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCC SGQALAQILAEKANPVGDIGYFGVTFGMKAKAQDALEPYKPVNWDQVPAGLKDADGYWTT HHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEE IHSGTLGLFVNKDALGGKPIPACWKDLLKPDYKGMVGYLDPSSAAVGYVGAVAVNLALGG EECCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHEEEEECC SQTNFDPAVSFLKDLRRNDPIVPKQTSYARVVSGEIPILFDYDFNAYRAKYTEKGNFEFV CCCCHHHHHHHHHHHHHCCCCCCCCCCHHEEECCCCCEEEECCCCHHHHEECCCCCEEEE IPCEGSVVFPYVVGLVKNAPDKDKAKKVMDYLLSDKGQAIWTNAYLRPARPIELPEAVKS EECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHH KFLPDSDYARAKSVNWGDMEAAQKGFVDRYLSEVR HCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800; 10675023 [H]