Click here to switch to the map view.

The map label for this gene is yisS [H]

Identifier: 146342011

GI number: 146342011

Start: 5349878

End: 5350879

Strand: Reverse

Name: yisS [H]

Synonym: BRADO5148

Alternate gene names: 146342011

Gene position: 5350879-5349878 (Counterclockwise)

Preceding gene: 146342013

Following gene: 146342010

Centisome position: 71.76

GC content: 68.26

Gene sequence:

>1002_bases
ATGAGTTCCAAGGGGGCGGGCCACAAGGCCGAGCTGAGGCAGGCGCTGCGGGTCGGCGTGATCGGAGCCGGCGTGATGGG
CAGCAACCATGCCCGCGTGCTGGCTGGCCTTCCCGATGTCCACCTCGTCGGCGTCGTCGATCCCTTGCCCGCGCATCGCG
ATCGCGTCACCCAGCTCGCCAATTGCCAGACCTTCGAAAGCCTCGATCAGCTCGCCGCCGAGGGCGTCGACGCCGTCACG
ATCGCGGCGCCGACCCATCTGCATCATGAGCTCGCGCTCGCCTGCATCGCCCGCAAGGTGCATCTCCTCGTCGAGAAGCC
GATCGCCTCCACGGTGGAGGAGGGCAGGGAGATCGTGTCGGCCGCGCATCGCGCCGGCGTCACCCTGATGATCGGACATG
TCGAGCGCTTCAACCCGGCGGTCGCCGCGATCAAGAAGGCGATCGCGGGCGAGGACATCCTCTCGATCGCGATCACCCGC
GTCGGCCCGTTCCCGCCGCGCATGTCGAATGTCGGCGTCGTCATCGACCTCGCCGTGCACGACATCGACCTGATCCGCTG
GTTCACCGAATCCGACATCGTCGAGGTGCAGCCGCAGCTGTCGAGCGCGGTGGCCGAGCGCGAGGACATCGCCCTCTTGC
AATTCCGCACCGCCTCCGGCGTGCTCGCGCACATCAACACCAACTGGCTGACGCCGTTCAAGGCGCGCAATGTCACCGTG
GCGACGCGGGGCAAGTACATCATGGGCGATCTGCTCACCCGCCAGGTCACCGAGTGCTTCGGCTTCAAGCCGGATGGCAG
CTACTCGATGCGGCATCTGCCGGTCGGCCATGACGAGCCGCTGCGCGCCGAGCTGATCGCGTTCCTGCATGCGGTGCGCT
CCGGCACCTCGCCGGCCGTGACCGGCGACGAGGGCGTCGCAAGTCTGGCCATCGCCACGCAGTGCCTGGAGACCTCGAGC
CATCGTCCGGCCGAGACCGCCAAGCTTCGCGCGGCGGGCTAG

Upstream 100 bases:

>100_bases
TCGCCTCGGTTCAAGTGACATGCTAGGAGAGCGTCGACCGGCTGATTTGCAGTTCGTTAACTGTCATGGCCAAACCGTGA
AATCGATGGGGTCGAGCGAC

Downstream 100 bases:

>100_bases
CCGCGAATCCGCGCCACCCATTTCCAATCTCGAAACGTTGTAGAGCTCATGAACCAGCATTTGCGTCATCAGCCCATTCC
GTTCATCGACACCGCCGCGC

Product: NAD(P)-dependent oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MSSKGAGHKAELRQALRVGVIGAGVMGSNHARVLAGLPDVHLVGVVDPLPAHRDRVTQLANCQTFESLDQLAAEGVDAVT
IAAPTHLHHELALACIARKVHLLVEKPIASTVEEGREIVSAAHRAGVTLMIGHVERFNPAVAAIKKAIAGEDILSIAITR
VGPFPPRMSNVGVVIDLAVHDIDLIRWFTESDIVEVQPQLSSAVAEREDIALLQFRTASGVLAHINTNWLTPFKARNVTV
ATRGKYIMGDLLTRQVTECFGFKPDGSYSMRHLPVGHDEPLRAELIAFLHAVRSGTSPAVTGDEGVASLAIATQCLETSS
HRPAETAKLRAAG

Sequences:

>Translated_333_residues
MSSKGAGHKAELRQALRVGVIGAGVMGSNHARVLAGLPDVHLVGVVDPLPAHRDRVTQLANCQTFESLDQLAAEGVDAVT
IAAPTHLHHELALACIARKVHLLVEKPIASTVEEGREIVSAAHRAGVTLMIGHVERFNPAVAAIKKAIAGEDILSIAITR
VGPFPPRMSNVGVVIDLAVHDIDLIRWFTESDIVEVQPQLSSAVAEREDIALLQFRTASGVLAHINTNWLTPFKARNVTV
ATRGKYIMGDLLTRQVTECFGFKPDGSYSMRHLPVGHDEPLRAELIAFLHAVRSGTSPAVTGDEGVASLAIATQCLETSS
HRPAETAKLRAAG
>Mature_332_residues
SSKGAGHKAELRQALRVGVIGAGVMGSNHARVLAGLPDVHLVGVVDPLPAHRDRVTQLANCQTFESLDQLAAEGVDAVTI
AAPTHLHHELALACIARKVHLLVEKPIASTVEEGREIVSAAHRAGVTLMIGHVERFNPAVAAIKKAIAGEDILSIAITRV
GPFPPRMSNVGVVIDLAVHDIDLIRWFTESDIVEVQPQLSSAVAEREDIALLQFRTASGVLAHINTNWLTPFKARNVTVA
TRGKYIMGDLLTRQVTECFGFKPDGSYSMRHLPVGHDEPLRAELIAFLHAVRSGTSPAVTGDEGVASLAIATQCLETSSH
RPAETAKLRAAG

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI87082405, Length=152, Percent_Identity=33.5526315789474, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787307, Length=185, Percent_Identity=28.6486486486486, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 35524; Mature: 35393

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: PS00398 RECOMBINASES_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSKGAGHKAELRQALRVGVIGAGVMGSNHARVLAGLPDVHLVGVVDPLPAHRDRVTQLA
CCCCCCCCHHHHHHHHHHHHEECCCCCCCCCEEEECCCCEEEEEECCCCCCHHHHHHHHH
NCQTFESLDQLAAEGVDAVTIAAPTHLHHELALACIARKVHLLVEKPIASTVEEGREIVS
CCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
AAHRAGVTLMIGHVERFNPAVAAIKKAIAGEDILSIAITRVGPFPPRMSNVGVVIDLAVH
HHHHCCEEEEEECHHHCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEHH
DIDLIRWFTESDIVEVQPQLSSAVAEREDIALLQFRTASGVLAHINTNWLTPFKARNVTV
HHHHHHHHCCCCEEEECHHHHHHHHHHCCEEEEEEECCCCEEEEECCCCCCCCCCCCEEE
ATRGKYIMGDLLTRQVTECFGFKPDGSYSMRHLPVGHDEPLRAELIAFLHAVRSGTSPAV
EECCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCCC
TGDEGVASLAIATQCLETSSHRPAETAKLRAAG
CCCCHHHHHHHHHHHHHCCCCCCCHHCCEECCC
>Mature Secondary Structure 
SSKGAGHKAELRQALRVGVIGAGVMGSNHARVLAGLPDVHLVGVVDPLPAHRDRVTQLA
CCCCCCCHHHHHHHHHHHHEECCCCCCCCCEEEECCCCEEEEEECCCCCCHHHHHHHHH
NCQTFESLDQLAAEGVDAVTIAAPTHLHHELALACIARKVHLLVEKPIASTVEEGREIVS
CCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
AAHRAGVTLMIGHVERFNPAVAAIKKAIAGEDILSIAITRVGPFPPRMSNVGVVIDLAVH
HHHHCCEEEEEECHHHCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEHH
DIDLIRWFTESDIVEVQPQLSSAVAEREDIALLQFRTASGVLAHINTNWLTPFKARNVTV
HHHHHHHHCCCCEEEECHHHHHHHHHHCCEEEEEEECCCCEEEEECCCCCCCCCCCCEEE
ATRGKYIMGDLLTRQVTECFGFKPDGSYSMRHLPVGHDEPLRAELIAFLHAVRSGTSPAV
EECCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCCC
TGDEGVASLAIATQCLETSSHRPAETAKLRAAG
CCCCHHHHHHHHHHHHHCCCCCCCHHCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353932; 9384377; 8407808 [H]