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The map label for this gene is degT [H]

Identifier: 146342010

GI number: 146342010

Start: 5348681

End: 5349829

Strand: Reverse

Name: degT [H]

Synonym: BRADO5147

Alternate gene names: 146342010

Gene position: 5349829-5348681 (Counterclockwise)

Preceding gene: 146342011

Following gene: 146342008

Centisome position: 71.75

GC content: 68.49

Gene sequence:

>1149_bases
ATGAACCAGCATTTGCGTCATCAGCCCATTCCGTTCATCGACACCGCCGCGCAGCGCCAGCGGCTCGGCAAGTCGCTCGA
TGACGCCGTGGCCCGCGTGCTCGCGCATTGCCAATTTCTCGGCGGCCCCGAGGTGATCCAGCTCGAGAAGGAGCTGGCCG
AGTTCTGCGGTGCCAAATACGCCGTGAGCTGCTCCAGCGGCACCGACGCGCTGCTGATGGTGCTGATGGCCCAGGGCATC
GGCCCGGGCGACGCGGTGCTGTGTCCGTCCTTCACCTTCTGCGCAACCGGCGAGTCCGTCGCGCTGACCGGCGCCACGCC
TGTTTTCGTCGACGTGCTGGAGGACACCTTCAACATCGACCCGGCCTCGCTCCGCCGCGGCATCGCCACCGCGAAGCGGC
TCGGCCTGAAGCCGAAGGCGGTGATCCCCGTCGATCTGTTCGGCCAGGCTGCCGACCACGATGCGGTCGCCGCGATCGCC
GCGGACGAGGGCCTGTTCGTGCTCGACGACGCAGCCCAAGGTTTCGGCGCCAGCTACAAGGGCCGCCGCATCGGCACCTT
CGGGCTCGCCACCGCGACCAGCTTCTATCCGGCCAAGCCGCTCGGCTGCTTCGGCGACGGCGGCGCCATCCTCACCGACG
ATGCCGGCCTGCTGGAGCGCCTGCGCAGCGTGCGCGCCCATGGCGGCGGCAGCGACAAATACGACAACGTCCGCCTCGGC
CTCACCGCGCGTCTCGACACCATCCAGGCGGCGGTGCTGATCGAGAAGCTCCGGATCTTCGAGGACGAGATCACAGCGCG
CAATGCGGTCGCCGCGCGCTACACCGCGGCGCTGGCCGACGTCGTGAAGGTGCCGCGCCTGGTCGAGGGCTGCACCTCGG
TGTGGGCGCAATACACCATCCGGCTGCCCAAGGGCGTCGACCGCGACACGTTTGCTGCCGCGCTGAAGGCGCAGGGCATC
CCGACCATGGTGTATTACCCGAAGTCGATGCACCAGCAGACCGCGTATCGCATCTTCCCGAGCGCCGACGGCGGCCTGCC
GGTCAGCGAGCAACTCTCCGCTGATGTCATCAGCCTGCCGATGCACGCTTATCTTGACGAAGCCACGCAGGCCCGCATCA
TCGACGTCGTGCGCGGCGCGCTGGCCTGA

Upstream 100 bases:

>100_bases
GACCTCGAGCCATCGTCCGGCCGAGACCGCCAAGCTTCGCGCGGCGGGCTAGCCGCGAATCCGCGCCACCCATTTCCAAT
CTCGAAACGTTGTAGAGCTC

Downstream 100 bases:

>100_bases
GGCTCTGCGGATCGTCAGGCCATTCGGCTCGCCGCGTCGCGGCGAGCCGCGCGTGCTGAACTGATCTGCCCCCACCGGGA
GCCCCACACACCAATGTCGT

Product: putative aminotransferase/DegT/DnrJ/EryC1/StrS family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MNQHLRHQPIPFIDTAAQRQRLGKSLDDAVARVLAHCQFLGGPEVIQLEKELAEFCGAKYAVSCSSGTDALLMVLMAQGI
GPGDAVLCPSFTFCATGESVALTGATPVFVDVLEDTFNIDPASLRRGIATAKRLGLKPKAVIPVDLFGQAADHDAVAAIA
ADEGLFVLDDAAQGFGASYKGRRIGTFGLATATSFYPAKPLGCFGDGGAILTDDAGLLERLRSVRAHGGGSDKYDNVRLG
LTARLDTIQAAVLIEKLRIFEDEITARNAVAARYTAALADVVKVPRLVEGCTSVWAQYTIRLPKGVDRDTFAAALKAQGI
PTMVYYPKSMHQQTAYRIFPSADGGLPVSEQLSADVISLPMHAYLDEATQARIIDVVRGALA

Sequences:

>Translated_382_residues
MNQHLRHQPIPFIDTAAQRQRLGKSLDDAVARVLAHCQFLGGPEVIQLEKELAEFCGAKYAVSCSSGTDALLMVLMAQGI
GPGDAVLCPSFTFCATGESVALTGATPVFVDVLEDTFNIDPASLRRGIATAKRLGLKPKAVIPVDLFGQAADHDAVAAIA
ADEGLFVLDDAAQGFGASYKGRRIGTFGLATATSFYPAKPLGCFGDGGAILTDDAGLLERLRSVRAHGGGSDKYDNVRLG
LTARLDTIQAAVLIEKLRIFEDEITARNAVAARYTAALADVVKVPRLVEGCTSVWAQYTIRLPKGVDRDTFAAALKAQGI
PTMVYYPKSMHQQTAYRIFPSADGGLPVSEQLSADVISLPMHAYLDEATQARIIDVVRGALA
>Mature_382_residues
MNQHLRHQPIPFIDTAAQRQRLGKSLDDAVARVLAHCQFLGGPEVIQLEKELAEFCGAKYAVSCSSGTDALLMVLMAQGI
GPGDAVLCPSFTFCATGESVALTGATPVFVDVLEDTFNIDPASLRRGIATAKRLGLKPKAVIPVDLFGQAADHDAVAAIA
ADEGLFVLDDAAQGFGASYKGRRIGTFGLATATSFYPAKPLGCFGDGGAILTDDAGLLERLRSVRAHGGGSDKYDNVRLG
LTARLDTIQAAVLIEKLRIFEDEITARNAVAARYTAALADVVKVPRLVEGCTSVWAQYTIRLPKGVDRDTFAAALKAQGI
PTMVYYPKSMHQQTAYRIFPSADGGLPVSEQLSADVISLPMHAYLDEATQARIIDVVRGALA

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=350, Percent_Identity=35.7142857142857, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI2367285, Length=339, Percent_Identity=30.9734513274336, Blast_Score=139, Evalue=4e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 40579; Mature: 40579

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQHLRHQPIPFIDTAAQRQRLGKSLDDAVARVLAHCQFLGGPEVIQLEKELAEFCGAKY
CCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCE
AVSCSSGTDALLMVLMAQGIGPGDAVLCPSFTFCATGESVALTGATPVFVDVLEDTFNID
EEEECCCHHHHHHHHHHCCCCCCCEEECCCEEEEECCCEEEEECCCHHHHHHHHHHCCCC
PASLRRGIATAKRLGLKPKAVIPVDLFGQAADHDAVAAIAADEGLFVLDDAAQGFGASYK
HHHHHHHHHHHHHHCCCCCEEEEHHHCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCC
GRRIGTFGLATATSFYPAKPLGCFGDGGAILTDDAGLLERLRSVRAHGGGSDKYDNVRLG
CCEEEEEHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCEEEE
LTARLDTIQAAVLIEKLRIFEDEITARNAVAARYTAALADVVKVPRLVEGCTSVWAQYTI
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
RLPKGVDRDTFAAALKAQGIPTMVYYPKSMHQQTAYRIFPSADGGLPVSEQLSADVISLP
ECCCCCCHHHHHHHHHHCCCCEEEECCHHHHHCHHEEEECCCCCCCCCHHHHCCHHHHCC
MHAYLDEATQARIIDVVRGALA
HHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNQHLRHQPIPFIDTAAQRQRLGKSLDDAVARVLAHCQFLGGPEVIQLEKELAEFCGAKY
CCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCE
AVSCSSGTDALLMVLMAQGIGPGDAVLCPSFTFCATGESVALTGATPVFVDVLEDTFNID
EEEECCCHHHHHHHHHHCCCCCCCEEECCCEEEEECCCEEEEECCCHHHHHHHHHHCCCC
PASLRRGIATAKRLGLKPKAVIPVDLFGQAADHDAVAAIAADEGLFVLDDAAQGFGASYK
HHHHHHHHHHHHHHCCCCCEEEEHHHCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCC
GRRIGTFGLATATSFYPAKPLGCFGDGGAILTDDAGLLERLRSVRAHGGGSDKYDNVRLG
CCEEEEEHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCEEEE
LTARLDTIQAAVLIEKLRIFEDEITARNAVAARYTAALADVVKVPRLVEGCTSVWAQYTI
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
RLPKGVDRDTFAAALKAQGIPTMVYYPKSMHQQTAYRIFPSADGGLPVSEQLSADVISLP
ECCCCCCHHHHHHHHHHCCCCEEEECCHHHHHCHHEEEECCCCCCCCCHHHHCCHHHHCC
MHAYLDEATQARIIDVVRGALA
HHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]