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The map label for this gene is cycF

Identifier: 146342003

GI number: 146342003

Start: 5339020

End: 5339475

Strand: Reverse

Name: cycF

Synonym: BRADO5139

Alternate gene names: NA

Gene position: 5339475-5339020 (Counterclockwise)

Preceding gene: 146342004

Following gene: 146342002

Centisome position: 71.61

GC content: 63.38

Gene sequence:

>456_bases
TTGATGAAGCGGACTGTCGTGGTGGCAGCAGCAGCGCTGCTGCTGGGGGCCGGCGCCGTGATGGCAGAGGACAATCTGGT
CAAGCAGAGCCAGGACATCATGAAGGCGAACGCCAAGAATCTCGGCGGTGTCCTGATCGCCATGGTCAAGGGCGAGAAGC
CGTATGACCAGGCCGCCGTCAATGCCGCTCTGGCGCAGCTCGAGGACACCGCCAAGAAGCTGCCGACGATGTATCCGGCG
AGCCTGAAGGGCGCGAAGTTCGAGGGCGACTACGGCCCGTCGCCGAAGATCTGGGAAGACCAGGCCGGCTTCAAGGCCAA
GATCGACAGCTTCGCCAAGGTCGTCACCGAGGCCAAGGCCAAGATCAAGGATCTCGACAGCCTGAAGGCGACCGCGCCGG
GGATCGGCAAGGAATGCGGCGGCTGCCACGAGACCTTCCGTCTCAAGAACAGCTGA

Upstream 100 bases:

>100_bases
ACCGCCTCAATTGCGGAATAACCCGCCGACTGAGGGGTTGACCAACCAGGCGCGACCCGTCCAGGTGGGCTGGGCGGGAT
TGTGACAACAAAGGAGCGAA

Downstream 100 bases:

>100_bases
TCTGACGCAAGTTTGAGGGGGCGGACGCGGCCACGCGTTCGCCCCCGTTTGTTTGTCCGGCGCAGGCGTCTTATTCTCCC
GGCCGCATCCGAGAGTCTCC

Product: cytochrome c, class II

Products: NA

Alternate protein names: Cytochrome c556 [H]

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MMKRTVVVAAAALLLGAGAVMAEDNLVKQSQDIMKANAKNLGGVLIAMVKGEKPYDQAAVNAALAQLEDTAKKLPTMYPA
SLKGAKFEGDYGPSPKIWEDQAGFKAKIDSFAKVVTEAKAKIKDLDSLKATAPGIGKECGGCHETFRLKNS

Sequences:

>Translated_151_residues
MMKRTVVVAAAALLLGAGAVMAEDNLVKQSQDIMKANAKNLGGVLIAMVKGEKPYDQAAVNAALAQLEDTAKKLPTMYPA
SLKGAKFEGDYGPSPKIWEDQAGFKAKIDSFAKVVTEAKAKIKDLDSLKATAPGIGKECGGCHETFRLKNS
>Mature_151_residues
MMKRTVVVAAAALLLGAGAVMAEDNLVKQSQDIMKANAKNLGGVLIAMVKGEKPYDQAAVNAALAQLEDTAKKLPTMYPA
SLKGAKFEGDYGPSPKIWEDQAGFKAKIDSFAKVVTEAKAKIKDLDSLKATAPGIGKECGGCHETFRLKNS

Specific function: Low-spin monoheme cytochrome c [H]

COG id: COG3909

COG function: function code C; Cytochrome c556

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010980
- InterPro:   IPR002321
- InterPro:   IPR012127 [H]

Pfam domain/function: PF01322 Cytochrom_C_2 [H]

EC number: NA

Molecular weight: Translated: 15941; Mature: 15941

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS51009 CYTCII

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKRTVVVAAAALLLGAGAVMAEDNLVKQSQDIMKANAKNLGGVLIAMVKGEKPYDQAAV
CCCHHHHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHH
NAALAQLEDTAKKLPTMYPASLKGAKFEGDYGPSPKIWEDQAGFKAKIDSFAKVVTEAKA
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
KIKDLDSLKATAPGIGKECGGCHETFRLKNS
HHHHHHHHHHCCCCCCCCCCCHHHHHEECCC
>Mature Secondary Structure
MMKRTVVVAAAALLLGAGAVMAEDNLVKQSQDIMKANAKNLGGVLIAMVKGEKPYDQAAV
CCCHHHHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHH
NAALAQLEDTAKKLPTMYPASLKGAKFEGDYGPSPKIWEDQAGFKAKIDSFAKVVTEAKA
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
KIKDLDSLKATAPGIGKECGGCHETFRLKNS
HHHHHHHHHHCCCCCCCCCCCHHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6273892 [H]