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The map label for this gene is rpoE [C]

Identifier: 146341258

GI number: 146341258

Start: 4526244

End: 4527164

Strand: Reverse

Name: rpoE [C]

Synonym: BRADO4334

Alternate gene names: 146341258

Gene position: 4527164-4526244 (Counterclockwise)

Preceding gene: 146341259

Following gene: 146341255

Centisome position: 60.71

GC content: 66.78

Gene sequence:

>921_bases
TTGAGTGACGGACCAGATGATCAGCAGGGAACGCGCAAGGCCGAGCTCGTGGCCGAGCTCGCCGTCCTGGCGGAGCAGCT
ACGGCCAGAGCTGCATCGCTATTGCGCCCGGCTGATGGGCTCGGTCATCGATGGCGAGGACGTCGTGCAGGATACGCTGA
CGCGTGCGCTCACGACTCTGGACGAGATGAAGGACATCGGCTCGTTGCGGGCATGGCTTTTCAAGGTCGCGCACAACCGG
GCGCTCGACCTGCTGCGCGGCCGCGCGATCCGCGCCGCCGAACCGATGGAGGCGGCGGATGACATTGCCGACGTCTCCGC
ACCTGATGCCGCGGAGACGATGATGCGCAAAGAGGCGATCCGGACCGCCGTGTCGCGCTTCACCGAGCTTCCGATTCCCC
AGCGCAGCATTCTGATCCTCAAGGACGTGCTGGATGAGCCGCTCGCCGACATTGCGGCGCTGCTCGGGCTGACGGTCGAC
TCGGTCAAGGCGCATCTCGCCCGCGCCCGTGCGCGGCTCTCCGAGATCAACGCCGTGGCCGAGGCGCGCCCCGCGGCGAG
GCCCGTGTCCGAGGCCGTGGCGCGCTATGTGAGTCTGTTCAACCAGCGTGATTGGGACGGCTTGCGCGCGCTGCTGGCGG
ACGATGTCAAACTGCACCAGTCCACACATCCCGTCCGCGTCGGGTCGGCCGACGTCGGACTGTTCTTCAGCATCTATGCC
GGCGTGGAGGGCGTATGGCTGGCGCCCGCCTGGCTCGAGGGCCGGGAGGTGATCGCCGTGTTCGACCGCAAGGACGATCG
GCAGCCCAGCTACGTCATGTGGCTGAGCTGGCGCGACGGCAAGATCAGCTTCATCCGCGACTACCGCTATGTCCGTTACG
TCATCGCCGACGCAGAGCTGGTCATCCCGCTTTCGTCCTGA

Upstream 100 bases:

>100_bases
ATCGCGTGGTTTCCGTGCTGGAGGATGCGCGGTTCGCCGACGGAGTCGTGTTCGGTCTCAATGGCGACGACGGCGTAACG
ATCATGGAAGGAGCGGCAGC

Downstream 100 bases:

>100_bases
GCGGCTGCGCCCGATCGTCTGATTGGTAGGGTGGGCAAAGGCGCGAAGCGCCGTGCCCACCGCTTCTTCGTCCTCATGGG
ATCGGTGGGCGCGCTGCGCT

Product: putative RNA polymerase sigma subunit

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma Subunit; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor; Sigma-; RNA Polymerase Sigma-70 Factor SigG; RNA Polymerase ECF-Type Sigma Factor; Sigma-70 Region 4 Family; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase ECF-Type Sigma Factor SigG; Extracytoplasmic Function AlteRNAtive Sigma Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Subunit; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; Sigma Factor; ECF Family RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor SigJ; RNA Polymerase Sigma-H Factor; Sigma-70 Factor Sigg; Fis Family Transcriptional Regulator; RNA Polymerase Sigma-70 Factor Family Protein

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MSDGPDDQQGTRKAELVAELAVLAEQLRPELHRYCARLMGSVIDGEDVVQDTLTRALTTLDEMKDIGSLRAWLFKVAHNR
ALDLLRGRAIRAAEPMEAADDIADVSAPDAAETMMRKEAIRTAVSRFTELPIPQRSILILKDVLDEPLADIAALLGLTVD
SVKAHLARARARLSEINAVAEARPAARPVSEAVARYVSLFNQRDWDGLRALLADDVKLHQSTHPVRVGSADVGLFFSIYA
GVEGVWLAPAWLEGREVIAVFDRKDDRQPSYVMWLSWRDGKISFIRDYRYVRYVIADAELVIPLSS

Sequences:

>Translated_306_residues
MSDGPDDQQGTRKAELVAELAVLAEQLRPELHRYCARLMGSVIDGEDVVQDTLTRALTTLDEMKDIGSLRAWLFKVAHNR
ALDLLRGRAIRAAEPMEAADDIADVSAPDAAETMMRKEAIRTAVSRFTELPIPQRSILILKDVLDEPLADIAALLGLTVD
SVKAHLARARARLSEINAVAEARPAARPVSEAVARYVSLFNQRDWDGLRALLADDVKLHQSTHPVRVGSADVGLFFSIYA
GVEGVWLAPAWLEGREVIAVFDRKDDRQPSYVMWLSWRDGKISFIRDYRYVRYVIADAELVIPLSS
>Mature_305_residues
SDGPDDQQGTRKAELVAELAVLAEQLRPELHRYCARLMGSVIDGEDVVQDTLTRALTTLDEMKDIGSLRAWLFKVAHNRA
LDLLRGRAIRAAEPMEAADDIADVSAPDAAETMMRKEAIRTAVSRFTELPIPQRSILILKDVLDEPLADIAALLGLTVDS
VKAHLARARARLSEINAVAEARPAARPVSEAVARYVSLFNQRDWDGLRALLADDVKLHQSTHPVRVGSADVGLFFSIYAG
VEGVWLAPAWLEGREVIAVFDRKDDRQPSYVMWLSWRDGKISFIRDYRYVRYVIADAELVIPLSS

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34041; Mature: 33910

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDGPDDQQGTRKAELVAELAVLAEQLRPELHRYCARLMGSVIDGEDVVQDTLTRALTTL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
DEMKDIGSLRAWLFKVAHNRALDLLRGRAIRAAEPMEAADDIADVSAPDAAETMMRKEAI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
RTAVSRFTELPIPQRSILILKDVLDEPLADIAALLGLTVDSVKAHLARARARLSEINAVA
HHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EARPAARPVSEAVARYVSLFNQRDWDGLRALLADDVKLHQSTHPVRVGSADVGLFFSIYA
HCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHH
GVEGVWLAPAWLEGREVIAVFDRKDDRQPSYVMWLSWRDGKISFIRDYRYVRYVIADAEL
CCCCEEECCCHHCCCEEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHEECCEE
VIPLSS
EEEECC
>Mature Secondary Structure 
SDGPDDQQGTRKAELVAELAVLAEQLRPELHRYCARLMGSVIDGEDVVQDTLTRALTTL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
DEMKDIGSLRAWLFKVAHNRALDLLRGRAIRAAEPMEAADDIADVSAPDAAETMMRKEAI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
RTAVSRFTELPIPQRSILILKDVLDEPLADIAALLGLTVDSVKAHLARARARLSEINAVA
HHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EARPAARPVSEAVARYVSLFNQRDWDGLRALLADDVKLHQSTHPVRVGSADVGLFFSIYA
HCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHH
GVEGVWLAPAWLEGREVIAVFDRKDDRQPSYVMWLSWRDGKISFIRDYRYVRYVIADAEL
CCCCEEECCCHHCCCEEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHEECCEE
VIPLSS
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA