| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is yaeT [H]
Identifier: 146341061
GI number: 146341061
Start: 4326656
End: 4329217
Strand: Reverse
Name: yaeT [H]
Synonym: BRADO4132
Alternate gene names: 146341061
Gene position: 4329217-4326656 (Counterclockwise)
Preceding gene: 146341062
Following gene: 146341060
Centisome position: 58.06
GC content: 64.44
Gene sequence:
>2562_bases ATGAAGTTCGGATTGCGGGTGCGGGGGGGCTTGGCGGCCGCCTTTATCATGTTCGCCGTTCCGGTGGCCTTGCCGCTGGC GAGCGTGGTGATGTCGTCGCCGGTCGCGGCTCAGACGGTCAACTCGATCGAGGTGGTGGGTAACCGCCGCGTCGAACTGG AGACCATCCGCTCCTACTTCAAGCCCGGTCCGGGCGGCACGCTGGACGCCGGCCGGATCGACGACGGCCTCAAGGCCCTG ATCGAAACCGGCCTGTTCTCGGACGTGAAGATCAACCGCCAGGGTGGCCGGCTGATCGTTTCCGTGGTCGAAAATCCGGT CATTGGACGCGTCGCGTTCGAGGGCAACAAGAAGGTCAAGGACGAGCAGCTCCAGGCGGAGGTGCAGTCCAAGCCGCGCG GGACGCTGTCGAAGCCGATGGTGCAGTCCGACGCGCAGCGCATCGCCGAGATCTATCGCCGCTCCGGCCGCTATGACGTG CGCGTCACGCCCGAGATGATCGAGCAGCCGAACAACCGCGTCGACCTCATCTTCACGATCCAGGAAGGCCCGAAGACCGG CGTGAAGTCGATCGAGTTCGTCGGCAACAACGCTTTCTCGTCCTATCGCCTCAAGGACGTCATCAAGACCCGCGAGACCA ACCTCCTGAGCTTCCTTGGCTCCGGCGACGTCTATGATCCGGACCGCGTCGAGGCCGACCGCGACCTGATCCGCCGCTTC TACCTCAAGAACGGCTATGCCGACGTGCAGGTGGTCGCCGCGCTCAGCGAGTATGATCCCGAGCGCAAGGGCTTCATGGT GACCTTCAAGATCGAGGAAGGTCAGCAGTACCGCGTCGGTTCGGTCGACTTCCAGTCGTCGATCGCGACGCTCGACCCCA ACGCGTTGCGCAATTACTCGCGCGTCAGCGTCGGATCGCTGTACAACGTCGAAAACATCGAGAAGTCGGTCGAGGAGATG CAGATCGAGGCCTCGCGGCGCGGTTATGCGTTCGCGGTGGTCCGTCCGCGCGGTGACCGCAACTTCGAGGCCCACACCGT GTCGGTGGTGTTCGCCGTCGACGAGGGCCCGCGCACCTACATCGAGCGCATCAACATCCGCGGCAACACCCGCACCCGCG ATTACGTCATTCGCCGCGAGTTCGACATCTCCGAGGGCGACGCCTACAACCGCGCCCTGGTGGACCGTGCCGAGCGCCGC CTGAAGAACCTCGACTTCTTCAAGGACGTGAAGATCTCGACCGAGCCCGGCTCGTCGAGCGACCGCGTCATCCTGGTCGT CAATCTCGAGGAGAAGTCGACCGGCGACTTCTCTATCTCGGGCGGCTATTCGACCACCGACGGCGCGCTGGCCGAGGTTT CGATCTCGGAGCGCAACTTCCTGGGCCGTGGCCTGTTCGCCAAGGCTTCGGTGACCTACGGCCAGTTCGCTCGCGGCTAC TCGCTGTCCTTCGTGGAGCCCTATCTGCTCGACTACCGTGTCGCGCTGGGTCTCGACCTCTATCAGCGCCAGCAGTTGGC CAACAACTTCATCTCCTACGGCACCAAGACGCTCGGTTTTAGCCCGCGGCTCGGCTTCCAGCTGCGTGAGGACCTGTCCC TGCAGCTGCGCTACTCGATCTACCGCCAGGAGATCACGCTGCCGACGACGCTGTCAGACTGTAACAACATTGCCGCCGGC AGCATGGTCGGTAACCGGTTCGTGCCGTTCAGTCCGACGCCCGCCTTCATCAACGGCAACCTCGGCGGTGTCGATCCGAC CGGCAACAACGGCCTTGGCTGCTTCGCCAATGGCGAGGCCTCGCTGCCGGTCCGCCAGGAGCTGGCGAATGGCGCGACGC TGACCTCGGCGCTCGGCTACACGCTGAACTACAACACGCTCGACAATAACAAGAACCCGACCGATGGCCTGCTGGTCGAT TTCAAGCAGGACTTCGCGGGCGTCGGCGGCGACGTCTCCTACCTGAAGACGGCGTTCGATGCGAAGTACTTCACCCCGCT GGTGTCGGACATCGTCAGCATCGTCCATCTGCAAGGCGGTATCCTGAACAAGATCGGCAACACGCAGCTGCGCATGCTCG ACCACTTCCAGATGGGTCCGAACCTGGTGCGCGGCTTTGCTCCGAACGGCATCGGTCCGCGCGACATCAACCCCTTCGGC ACACAGGACGCGCTGGGCGGCACCAAGTACTGGGGCGCTTCGCTCGAATTGCAGATGCCGTTCTGGTTCCTGCCCAAGGA GACGGGCCTGAAGGGCGCGGTCTATGCTGATGCGGGCGGCCTGTGGGGATATCAGGGTCCGACGTCCTGGGCGGCGACGG GCGAGGTCAACGTGGCGGGCTGCCGGGCGCCGACCCGTGCCACAGCGACGGTCCCGGCCAATGCCGGCACCTGCCTCGGC CTGCAGTTCGACGACCAGAACAAGGTCCGCAGCTCTGTCGGTGTCGGTCTGGTGTGGGCGTCGCCGTTCGGTCCGCTGCG CTTCGACTACGCGATCCCGCTCACCAAGGGTCAGTTCGACCGGACCCAGGAGTTCCGGTTCGGCGGCGGTACCTCCTTCT GA
Upstream 100 bases:
>100_bases TTTGCCGTCCAAGGCAAATTGGTTACAAGCGAACGACAAATGGGAATCTGTCGGCTCGGTAGGGGTACTGAACCGGCATC GGAATAAGGGCGCGTAGCGC
Downstream 100 bases:
>100_bases GCCTGAGCCGATCGAATCCGGGTTGGCGTGGACCAACCCAGCCGGTGTAAGAGATGAGAGCTCGGTTCCGGGAGACTGGA GCCGGGCTCTGACGTTTTGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 853; Mature: 853
Protein sequence:
>853_residues MKFGLRVRGGLAAAFIMFAVPVALPLASVVMSSPVAAQTVNSIEVVGNRRVELETIRSYFKPGPGGTLDAGRIDDGLKAL IETGLFSDVKINRQGGRLIVSVVENPVIGRVAFEGNKKVKDEQLQAEVQSKPRGTLSKPMVQSDAQRIAEIYRRSGRYDV RVTPEMIEQPNNRVDLIFTIQEGPKTGVKSIEFVGNNAFSSYRLKDVIKTRETNLLSFLGSGDVYDPDRVEADRDLIRRF YLKNGYADVQVVAALSEYDPERKGFMVTFKIEEGQQYRVGSVDFQSSIATLDPNALRNYSRVSVGSLYNVENIEKSVEEM QIEASRRGYAFAVVRPRGDRNFEAHTVSVVFAVDEGPRTYIERINIRGNTRTRDYVIRREFDISEGDAYNRALVDRAERR LKNLDFFKDVKISTEPGSSSDRVILVVNLEEKSTGDFSISGGYSTTDGALAEVSISERNFLGRGLFAKASVTYGQFARGY SLSFVEPYLLDYRVALGLDLYQRQQLANNFISYGTKTLGFSPRLGFQLREDLSLQLRYSIYRQEITLPTTLSDCNNIAAG SMVGNRFVPFSPTPAFINGNLGGVDPTGNNGLGCFANGEASLPVRQELANGATLTSALGYTLNYNTLDNNKNPTDGLLVD FKQDFAGVGGDVSYLKTAFDAKYFTPLVSDIVSIVHLQGGILNKIGNTQLRMLDHFQMGPNLVRGFAPNGIGPRDINPFG TQDALGGTKYWGASLELQMPFWFLPKETGLKGAVYADAGGLWGYQGPTSWAATGEVNVAGCRAPTRATATVPANAGTCLG LQFDDQNKVRSSVGVGLVWASPFGPLRFDYAIPLTKGQFDRTQEFRFGGGTSF
Sequences:
>Translated_853_residues MKFGLRVRGGLAAAFIMFAVPVALPLASVVMSSPVAAQTVNSIEVVGNRRVELETIRSYFKPGPGGTLDAGRIDDGLKAL IETGLFSDVKINRQGGRLIVSVVENPVIGRVAFEGNKKVKDEQLQAEVQSKPRGTLSKPMVQSDAQRIAEIYRRSGRYDV RVTPEMIEQPNNRVDLIFTIQEGPKTGVKSIEFVGNNAFSSYRLKDVIKTRETNLLSFLGSGDVYDPDRVEADRDLIRRF YLKNGYADVQVVAALSEYDPERKGFMVTFKIEEGQQYRVGSVDFQSSIATLDPNALRNYSRVSVGSLYNVENIEKSVEEM QIEASRRGYAFAVVRPRGDRNFEAHTVSVVFAVDEGPRTYIERINIRGNTRTRDYVIRREFDISEGDAYNRALVDRAERR LKNLDFFKDVKISTEPGSSSDRVILVVNLEEKSTGDFSISGGYSTTDGALAEVSISERNFLGRGLFAKASVTYGQFARGY SLSFVEPYLLDYRVALGLDLYQRQQLANNFISYGTKTLGFSPRLGFQLREDLSLQLRYSIYRQEITLPTTLSDCNNIAAG SMVGNRFVPFSPTPAFINGNLGGVDPTGNNGLGCFANGEASLPVRQELANGATLTSALGYTLNYNTLDNNKNPTDGLLVD FKQDFAGVGGDVSYLKTAFDAKYFTPLVSDIVSIVHLQGGILNKIGNTQLRMLDHFQMGPNLVRGFAPNGIGPRDINPFG TQDALGGTKYWGASLELQMPFWFLPKETGLKGAVYADAGGLWGYQGPTSWAATGEVNVAGCRAPTRATATVPANAGTCLG LQFDDQNKVRSSVGVGLVWASPFGPLRFDYAIPLTKGQFDRTQEFRFGGGTSF >Mature_853_residues MKFGLRVRGGLAAAFIMFAVPVALPLASVVMSSPVAAQTVNSIEVVGNRRVELETIRSYFKPGPGGTLDAGRIDDGLKAL IETGLFSDVKINRQGGRLIVSVVENPVIGRVAFEGNKKVKDEQLQAEVQSKPRGTLSKPMVQSDAQRIAEIYRRSGRYDV RVTPEMIEQPNNRVDLIFTIQEGPKTGVKSIEFVGNNAFSSYRLKDVIKTRETNLLSFLGSGDVYDPDRVEADRDLIRRF YLKNGYADVQVVAALSEYDPERKGFMVTFKIEEGQQYRVGSVDFQSSIATLDPNALRNYSRVSVGSLYNVENIEKSVEEM QIEASRRGYAFAVVRPRGDRNFEAHTVSVVFAVDEGPRTYIERINIRGNTRTRDYVIRREFDISEGDAYNRALVDRAERR LKNLDFFKDVKISTEPGSSSDRVILVVNLEEKSTGDFSISGGYSTTDGALAEVSISERNFLGRGLFAKASVTYGQFARGY SLSFVEPYLLDYRVALGLDLYQRQQLANNFISYGTKTLGFSPRLGFQLREDLSLQLRYSIYRQEITLPTTLSDCNNIAAG SMVGNRFVPFSPTPAFINGNLGGVDPTGNNGLGCFANGEASLPVRQELANGATLTSALGYTLNYNTLDNNKNPTDGLLVD FKQDFAGVGGDVSYLKTAFDAKYFTPLVSDIVSIVHLQGGILNKIGNTQLRMLDHFQMGPNLVRGFAPNGIGPRDINPFG TQDALGGTKYWGASLELQMPFWFLPKETGLKGAVYADAGGLWGYQGPTSWAATGEVNVAGCRAPTRATATVPANAGTCLG LQFDDQNKVRSSVGVGLVWASPFGPLRFDYAIPLTKGQFDRTQEFRFGGGTSF
Specific function: Involved in the assembly of outer membrane proteins. Does not play a direct role in the export of outer membrane lipids [H]
COG id: COG4775
COG function: function code M; Outer membrane protein/protective antigen OMA87
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the surface antigen D15 family [H]
Homologues:
Organism=Homo sapiens, GI225543166, Length=161, Percent_Identity=34.1614906832298, Blast_Score=82, Evalue=2e-15, Organism=Escherichia coli, GI1786374, Length=871, Percent_Identity=26.0619977037887, Blast_Score=262, Evalue=9e-71,
Paralogues:
None
Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000184 - InterPro: IPR016474 - InterPro: IPR010827 [H]
Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]
EC number: NA
Molecular weight: Translated: 93654; Mature: 93654
Theoretical pI: Translated: 8.43; Mature: 8.43
Prosite motif: PS00430 TONB_DEPENDENT_REC_1 ; PS00539 PYROKININ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFGLRVRGGLAAAFIMFAVPVALPLASVVMSSPVAAQTVNSIEVVGNRRVELETIRSYF CCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCEEEECCCEEEHHHHHHHH KPGPGGTLDAGRIDDGLKALIETGLFSDVKINRQGGRLIVSVVENPVIGRVAFEGNKKVK CCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCEEEEEECCCCEEEEEEECCCCCCC DEQLQAEVQSKPRGTLSKPMVQSDAQRIAEIYRRSGRYDVRVTPEMIEQPNNRVDLIFTI HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECHHHHHCCCCEEEEEEEE QEGPKTGVKSIEFVGNNAFSSYRLKDVIKTRETNLLSFLGSGDVYDPDRVEADRDLIRRF CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH YLKNGYADVQVVAALSEYDPERKGFMVTFKIEEGQQYRVGSVDFQSSIATLDPNALRNYS HHCCCCCCHHEEEEHHHCCCCCCCEEEEEEECCCCEEEECCEEHHCCCEECCHHHHHCCC RVSVGSLYNVENIEKSVEEMQIEASRRGYAFAVVRPRGDRNFEAHTVSVVFAVDEGPRTY CEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEEEEEECCCCCEE IERINIRGNTRTRDYVIRREFDISEGDAYNRALVDRAERRLKNLDFFKDVKISTEPGSSS HEEEECCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHCEEEECCCCCCC DRVILVVNLEEKSTGDFSISGGYSTTDGALAEVSISERNFLGRGLFAKASVTYGQFARGY CCEEEEEEECCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCEEEEECCHHHHHCCC SLSFVEPYLLDYRVALGLDLYQRQQLANNFISYGTKTLGFSPRLGFQLREDLSLQLRYSI CCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHCCCCCCCCCEECCCCCEEEEEEE YRQEITLPTTLSDCNNIAAGSMVGNRFVPFSPTPAFINGNLGGVDPTGNNGLGCFANGEA EHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCC SLPVRQELANGATLTSALGYTLNYNTLDNNKNPTDGLLVDFKQDFAGVGGDVSYLKTAFD CCCHHHHHCCCCEEHHHCCEEEEEEECCCCCCCCCCEEEEEHHHHCCCCCCHHHHHHHHC AKYFTPLVSDIVSIVHLQGGILNKIGNTQLRMLDHFQMGPNLVRGFAPNGIGPRDINPFG CHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCC TQDALGGTKYWGASLELQMPFWFLPKETGLKGAVYADAGGLWGYQGPTSWAATGEVNVAG CCCCCCCCEECCCEEEEECCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEE CRAPTRATATVPANAGTCLGLQFDDQNKVRSSVGVGLVWASPFGPLRFDYAIPLTKGQFD CCCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCEEEEEECCCCCEEEEEEECCCCCCCC RTQEFRFGGGTSF CCHHEECCCCCCC >Mature Secondary Structure MKFGLRVRGGLAAAFIMFAVPVALPLASVVMSSPVAAQTVNSIEVVGNRRVELETIRSYF CCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCEEEECCCEEEHHHHHHHH KPGPGGTLDAGRIDDGLKALIETGLFSDVKINRQGGRLIVSVVENPVIGRVAFEGNKKVK CCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCEEEEEECCCCEEEEEEECCCCCCC DEQLQAEVQSKPRGTLSKPMVQSDAQRIAEIYRRSGRYDVRVTPEMIEQPNNRVDLIFTI HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECHHHHHCCCCEEEEEEEE QEGPKTGVKSIEFVGNNAFSSYRLKDVIKTRETNLLSFLGSGDVYDPDRVEADRDLIRRF CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH YLKNGYADVQVVAALSEYDPERKGFMVTFKIEEGQQYRVGSVDFQSSIATLDPNALRNYS HHCCCCCCHHEEEEHHHCCCCCCCEEEEEEECCCCEEEECCEEHHCCCEECCHHHHHCCC RVSVGSLYNVENIEKSVEEMQIEASRRGYAFAVVRPRGDRNFEAHTVSVVFAVDEGPRTY CEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEEEEEECCCCCEE IERINIRGNTRTRDYVIRREFDISEGDAYNRALVDRAERRLKNLDFFKDVKISTEPGSSS HEEEECCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHCEEEECCCCCCC DRVILVVNLEEKSTGDFSISGGYSTTDGALAEVSISERNFLGRGLFAKASVTYGQFARGY CCEEEEEEECCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCEEEEECCHHHHHCCC SLSFVEPYLLDYRVALGLDLYQRQQLANNFISYGTKTLGFSPRLGFQLREDLSLQLRYSI CCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHCCCCCCCCCEECCCCCEEEEEEE YRQEITLPTTLSDCNNIAAGSMVGNRFVPFSPTPAFINGNLGGVDPTGNNGLGCFANGEA EHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCC SLPVRQELANGATLTSALGYTLNYNTLDNNKNPTDGLLVDFKQDFAGVGGDVSYLKTAFD CCCHHHHHCCCCEEHHHCCEEEEEEECCCCCCCCCCEEEEEHHHHCCCCCCHHHHHHHHC AKYFTPLVSDIVSIVHLQGGILNKIGNTQLRMLDHFQMGPNLVRGFAPNGIGPRDINPFG CHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCC TQDALGGTKYWGASLELQMPFWFLPKETGLKGAVYADAGGLWGYQGPTSWAATGEVNVAG CCCCCCCCEECCCEEEEECCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEE CRAPTRATATVPANAGTCLGLQFDDQNKVRSSVGVGLVWASPFGPLRFDYAIPLTKGQFD CCCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCEEEEEECCCCCEEEEEEECCCCCCCC RTQEFRFGGGTSF CCHHEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA