BacMap

Definition	Bradyrhizobium sp. ORS278 chromosome, complete genome.
Accession	NC_009445
Length	7,456,587

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The map label for this gene is yciK [H]

Identifier: 146340255

GI number: 146340255

Start: 3476013

End: 3476756

Strand: Reverse

Name: yciK [H]

Synonym: BRADO3276

Alternate gene names: 146340255

Gene position: 3476756-3476013 (Counterclockwise)

Preceding gene: 146340258

Following gene: 146340251

Centisome position: 46.63

GC content: 70.7

Gene sequence:

>744_bases
ATGACCCTTCCCCTCGCCAATCGGATTGCCCTCGTGACCGGCGCCTCGCGCGGCATCGGCCATGCGACCGCGCGCGCGCT
CGCCCGCGCCGGCGCGCATGTCGTGGCCGTCGCCCGCACGCAAGGAGGGCTGGAGGAGCTCGACGACGAGATCCGCAAGG
AGACCGGCCACGGCGCCACGCTGGTGCCGCTCAGCATGACCGACAGCGACGGCATCGCCCGGCTCGGCGCCGCGCTGCAC
GAGCGCCACGGCAAGCTCGACATCCTCGTCGGCAACGCCGCCGTGCCCGGCCCGTCCTCGCCGCTCGGCCATATCGACCT
CAAGCCCTGGAACGACGTCGTGACGGTGAACCTCTCGGCGAACTTCCAATTGATCCGCTGCATGGAGCCGCTGCTGAAGG
CCTCCGATGCCGGCCGCGCGGTGTTCCTCACGTCGGGCGCCGCGCAGCGCGCGCAGGCTTATCTCGGCCCCTATGCGGTC
ACCAAGGCGGCGCTGGAGACCCTGGCGCGCGTCTGGGCGCACGAGACCGAGCGCACGGCGCTGCGCGTCAATCTGTTCAG
CCCTGGCCCGATCCGCACCCGCATGCGCGCCACCGTCTTCCCCGGCGAAGACCCGATGACGCTGGACACGCCCGAGCAGG
TCGCCGAGTTCATCGTGCCGCTCTGCCTGCCGTCCTGGACCGAGACCGGCAAGCTCTACGAGTACAAGACCCGCACGCTG
AAGAGCTTTCAGCTGCCAGCGTAG

Upstream 100 bases:

>100_bases
CTTGACCAACAGGACTAGCCACGGGCAGCCAACTCCCTCATAACCGCCGCGGAGTATGGGTCCCGGCGTGCGCCGGGACG
ACGGCCCTGAGATGATCGTG

Downstream 100 bases:

>100_bases
CGCACCCGCGCGACCGCTGACATCACGTGCCCGCCACGATCTCCACGAACGCGATGCTACGATCGGGCCCGGCTGCCTGC
GACCTCCGCCGTCGTCGTCC

Product: putative Short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MTLPLANRIALVTGASRGIGHATARALARAGAHVVAVARTQGGLEELDDEIRKETGHGATLVPLSMTDSDGIARLGAALH
ERHGKLDILVGNAAVPGPSSPLGHIDLKPWNDVVTVNLSANFQLIRCMEPLLKASDAGRAVFLTSGAAQRAQAYLGPYAV
TKAALETLARVWAHETERTALRVNLFSPGPIRTRMRATVFPGEDPMTLDTPEQVAEFIVPLCLPSWTETGKLYEYKTRTL
KSFQLPA

Sequences:

>Translated_247_residues
MTLPLANRIALVTGASRGIGHATARALARAGAHVVAVARTQGGLEELDDEIRKETGHGATLVPLSMTDSDGIARLGAALH
ERHGKLDILVGNAAVPGPSSPLGHIDLKPWNDVVTVNLSANFQLIRCMEPLLKASDAGRAVFLTSGAAQRAQAYLGPYAV
TKAALETLARVWAHETERTALRVNLFSPGPIRTRMRATVFPGEDPMTLDTPEQVAEFIVPLCLPSWTETGKLYEYKTRTL
KSFQLPA
>Mature_246_residues
TLPLANRIALVTGASRGIGHATARALARAGAHVVAVARTQGGLEELDDEIRKETGHGATLVPLSMTDSDGIARLGAALHE
RHGKLDILVGNAAVPGPSSPLGHIDLKPWNDVVTVNLSANFQLIRCMEPLLKASDAGRAVFLTSGAAQRAQAYLGPYAVT
KAALETLARVWAHETERTALRVNLFSPGPIRTRMRATVFPGEDPMTLDTPEQVAEFIVPLCLPSWTETGKLYEYKTRTLK
SFQLPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=229, Percent_Identity=32.3144104803493, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI5031737, Length=212, Percent_Identity=33.9622641509434, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI33667109, Length=208, Percent_Identity=34.6153846153846, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI109715829, Length=244, Percent_Identity=31.1475409836066, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=32.2404371584699, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI4504505, Length=241, Percent_Identity=29.045643153527, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI7705925, Length=197, Percent_Identity=36.0406091370558, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI126723750, Length=202, Percent_Identity=32.1782178217822, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI7657478, Length=214, Percent_Identity=27.5700934579439, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI20149619, Length=197, Percent_Identity=27.9187817258883, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI209862901, Length=202, Percent_Identity=28.2178217821782, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI19923983, Length=202, Percent_Identity=28.2178217821782, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI19743808, Length=193, Percent_Identity=26.9430051813472, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI40548397, Length=193, Percent_Identity=25.3886010362694, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI214010158, Length=193, Percent_Identity=25.3886010362694, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI214010156, Length=193, Percent_Identity=25.3886010362694, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI22758144, Length=193, Percent_Identity=25.3886010362694, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI10190704, Length=191, Percent_Identity=30.3664921465969, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI1787526, Length=221, Percent_Identity=38.0090497737557, Blast_Score=128, Evalue=3e-31,
Organism=Escherichia coli, GI1787335, Length=193, Percent_Identity=31.0880829015544, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87082100, Length=211, Percent_Identity=31.2796208530806, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790717, Length=205, Percent_Identity=26.8292682926829, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1789378, Length=197, Percent_Identity=33.502538071066, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082160, Length=197, Percent_Identity=27.9187817258883, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI2367175, Length=234, Percent_Identity=30.3418803418803, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786812, Length=204, Percent_Identity=28.4313725490196, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1787820, Length=219, Percent_Identity=26.4840182648402, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786701, Length=217, Percent_Identity=25.8064516129032, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1787905, Length=237, Percent_Identity=29.1139240506329, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17560676, Length=201, Percent_Identity=33.8308457711443, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17562910, Length=206, Percent_Identity=33.0097087378641, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17561402, Length=198, Percent_Identity=28.7878787878788, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17531453, Length=234, Percent_Identity=32.4786324786325, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17562904, Length=197, Percent_Identity=31.9796954314721, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17563726, Length=233, Percent_Identity=30.4721030042918, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17562906, Length=230, Percent_Identity=31.7391304347826, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17536025, Length=209, Percent_Identity=32.0574162679426, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=204, Percent_Identity=29.9019607843137, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17507613, Length=194, Percent_Identity=27.319587628866, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI32563809, Length=194, Percent_Identity=27.319587628866, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17555612, Length=219, Percent_Identity=30.1369863013699, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17560332, Length=200, Percent_Identity=31.5, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI72000259, Length=229, Percent_Identity=28.82096069869, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17562908, Length=201, Percent_Identity=32.8358208955224, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193204405, Length=206, Percent_Identity=31.0679611650485, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17538480, Length=201, Percent_Identity=30.3482587064677, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=196, Percent_Identity=30.6122448979592, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17536651, Length=199, Percent_Identity=29.1457286432161, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17559104, Length=195, Percent_Identity=31.2820512820513, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=216, Percent_Identity=27.7777777777778, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=211, Percent_Identity=28.436018957346, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17538182, Length=238, Percent_Identity=26.0504201680672, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6322227, Length=218, Percent_Identity=30.2752293577982, Blast_Score=86, Evalue=5e-18,
Organism=Saccharomyces cerevisiae, GI6322226, Length=212, Percent_Identity=29.7169811320755, Blast_Score=80, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6323882, Length=204, Percent_Identity=29.4117647058824, Blast_Score=72, Evalue=9e-14,
Organism=Saccharomyces cerevisiae, GI6322861, Length=247, Percent_Identity=25.9109311740891, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21355319, Length=201, Percent_Identity=32.3383084577114, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI23397609, Length=199, Percent_Identity=33.1658291457286, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI24639444, Length=233, Percent_Identity=31.3304721030043, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21357041, Length=193, Percent_Identity=29.5336787564767, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI28571526, Length=189, Percent_Identity=29.6296296296296, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI21358495, Length=234, Percent_Identity=24.7863247863248, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24644339, Length=195, Percent_Identity=27.6923076923077, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24643142, Length=203, Percent_Identity=32.512315270936, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24663911, Length=198, Percent_Identity=28.2828282828283, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI17737361, Length=247, Percent_Identity=24.2914979757085, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI116007236, Length=210, Percent_Identity=28.5714285714286, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26475; Mature: 26344

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLPLANRIALVTGASRGIGHATARALARAGAHVVAVARTQGGLEELDDEIRKETGHGAT
CCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCCE
LVPLSMTDSDGIARLGAALHERHGKLDILVGNAAVPGPSSPLGHIDLKPWNDVVTVNLSA
EEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEECCCCCCEEEEEECC
NFQLIRCMEPLLKASDAGRAVFLTSGAAQRAQAYLGPYAVTKAALETLARVWAHETERTA
CEEHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCEE
LRVNLFSPGPIRTRMRATVFPGEDPMTLDTPEQVAEFIVPLCLPSWTETGKLYEYKTRTL
EEEEECCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEHHHHH
KSFQLPA
HHCCCCC
>Mature Secondary Structure 
TLPLANRIALVTGASRGIGHATARALARAGAHVVAVARTQGGLEELDDEIRKETGHGAT
CCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCCE
LVPLSMTDSDGIARLGAALHERHGKLDILVGNAAVPGPSSPLGHIDLKPWNDVVTVNLSA
EEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEECCCCCCEEEEEECC
NFQLIRCMEPLLKASDAGRAVFLTSGAAQRAQAYLGPYAVTKAALETLARVWAHETERTA
CEEHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCEE
LRVNLFSPGPIRTRMRATVFPGEDPMTLDTPEQVAEFIVPLCLPSWTETGKLYEYKTRTL
EEEEECCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEHHHHH
KSFQLPA
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on the CH-OH group of donors; With NAD or NADP as acceptor [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 1885549 [H]