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The map label for this gene is uidR [H]

Identifier: 146340251

GI number: 146340251

Start: 3472442

End: 3473050

Strand: Reverse

Name: uidR [H]

Synonym: BRADO3272

Alternate gene names: 146340251

Gene position: 3473050-3472442 (Counterclockwise)

Preceding gene: 146340255

Following gene: 146340250

Centisome position: 46.58

GC content: 67.82

Gene sequence:

>609_bases
ATGAGGAAGGTTGATCCGGTCAGGCACGAGCAGAAGCGGGGCGAGATTCTCCGCGCCGCGCTGGCCTGCTTCGTCCGGGA
TGGCTTTCACGGCGCCAGCACCACCGACATCTGCGCCGAGGCCAAGATCAGCCCGGGCCACCTCTACCACTACTTCCCCA
GCAAGGAGACGATGATCCAGGCGCTGGTGGAGCAGAACCTCTGCCACGCCGCCTCCCGTCTCAAGGTTATCTTGACGGAG
CCCGACGTCATCGAAGCGCTGGTTCTGGAGCTCGAGAGCACCAGCATCCACCGGCCGGAGGCCCAGGTGCTCAGCGCCGA
GGCGCTCGCCGAGGCCTGCCGCAATCCGCAGTTCGCAGCCATCGTTCATGCCCATGCGCGGGCGATGCGGGCACTGCTGG
TCGATTTCATCACCAAGGCCCAGCGCCGCGGCGAGGTGGACGCGGGCCTCGATCCCGAGGCGACGGCCAACATCCTGTTC
GTCGTGGTGGACGGCGCGCGCGCGCTGCCGATCCGCAATCCGAACGTCGACGTCGCGCAGAGCACGCAGCATCTGCGTCT
CATGCTGACGCGCTTCCTCAGGCCCGCCGCGGCGTCGGCGGTCGCGTGA

Upstream 100 bases:

>100_bases
TTCTCTAGAAAACAGCGGCGAGAAATATTATTTTATATTACAAGGGTTTGGCAAAGTTGGATGGAATGAGGCGGCCGCTG
GGCAGGCAGAGCGCGAACCG

Downstream 100 bases:

>100_bases
GACCGCGCATCGCCATCGCCGGCAATTGACACCCTCCCCCGCGCACGATTGACTGCATTCAACTAAGCGGATGACCGCAG
CAGATCGGGGAGGATGCCAT

Product: TetR/AcrR family transcriptional regulator

Products: NA

Alternate protein names: Uid operon repressor [H]

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MRKVDPVRHEQKRGEILRAALACFVRDGFHGASTTDICAEAKISPGHLYHYFPSKETMIQALVEQNLCHAASRLKVILTE
PDVIEALVLELESTSIHRPEAQVLSAEALAEACRNPQFAAIVHAHARAMRALLVDFITKAQRRGEVDAGLDPEATANILF
VVVDGARALPIRNPNVDVAQSTQHLRLMLTRFLRPAAASAVA

Sequences:

>Translated_202_residues
MRKVDPVRHEQKRGEILRAALACFVRDGFHGASTTDICAEAKISPGHLYHYFPSKETMIQALVEQNLCHAASRLKVILTE
PDVIEALVLELESTSIHRPEAQVLSAEALAEACRNPQFAAIVHAHARAMRALLVDFITKAQRRGEVDAGLDPEATANILF
VVVDGARALPIRNPNVDVAQSTQHLRLMLTRFLRPAAASAVA
>Mature_202_residues
MRKVDPVRHEQKRGEILRAALACFVRDGFHGASTTDICAEAKISPGHLYHYFPSKETMIQALVEQNLCHAASRLKVILTE
PDVIEALVLELESTSIHRPEAQVLSAEALAEACRNPQFAAIVHAHARAMRALLVDFITKAQRRGEVDAGLDPEATANILF
VVVDGARALPIRNPNVDVAQSTQHLRLMLTRFLRPAAASAVA

Specific function: Repressor for the uidRABC (gusRABC) operon [H]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787904, Length=156, Percent_Identity=32.0512820512821, Blast_Score=83, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22126; Mature: 22126

Theoretical pI: Translated: 7.65; Mature: 7.65

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKVDPVRHEQKRGEILRAALACFVRDGFHGASTTDICAEAKISPGHLYHYFPSKETMIQ
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCEEEEECCCHHHHHH
ALVEQNLCHAASRLKVILTEPDVIEALVLELESTSIHRPEAQVLSAEALAEACRNPQFAA
HHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHH
IVHAHARAMRALLVDFITKAQRRGEVDAGLDPEATANILFVVVDGARALPIRNPNVDVAQ
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCEECCCCCCCCCHHH
STQHLRLMLTRFLRPAAASAVA
HHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRKVDPVRHEQKRGEILRAALACFVRDGFHGASTTDICAEAKISPGHLYHYFPSKETMIQ
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCEEEEECCCHHHHHH
ALVEQNLCHAASRLKVILTEPDVIEALVLELESTSIHRPEAQVLSAEALAEACRNPQFAA
HHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHH
IVHAHARAMRALLVDFITKAQRRGEVDAGLDPEATANILFVVVDGARALPIRNPNVDVAQ
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCEECCCCCCCCCHHH
STQHLRLMLTRFLRPAAASAVA
HHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]