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The map label for this gene is pecT [H]

Identifier: 146340238

GI number: 146340238

Start: 3461652

End: 3462509

Strand: Reverse

Name: pecT [H]

Synonym: BRADO3257

Alternate gene names: 146340238

Gene position: 3462509-3461652 (Counterclockwise)

Preceding gene: 146340240

Following gene: 146340237

Centisome position: 46.44

GC content: 69.7

Gene sequence:

>858_bases
ATGACCCCGACTCTCGACGTTTCGGCCGTTCGCGCCTTCCTGCTGGTCTGCGATCTCAAGAGCTTCACACGCTCGGCCGA
AGCGCTGGGCACGACGCAGGCCGCGGTCAGCCTGAAGCTGCAGCGGCTGGAAACGGCACTCGGCAAGCGCCTGCTGGAGC
GCTCGCCGCGGGCCGTCCAGCTGACCGCCGATGGCGCGGCCTTCGTCGACAACGCCCGCACGCTTGTCGCCGCGCACGAT
GCTGCGCTGGCAGGCGGTTCCAGCGAGAGGCCGCGATTGTCGCTCGGCATCAGCGATCATGCCGCCGGCCCCGAGCTGGT
GCCGATGCTGCAGCAGTTTCAGGCCATCGTCACCCGGCTGAGCCTGTCAGTCAGCATCGGCTTTTCCCGCGACCTGCTCG
ACAGCTACGATGCGGGCACGCTCGATGCGATCATCATTCGCCAGGAGGCCTCCCGCCGTGGCGGGGAGACCCTGGCCGAT
GACGAATTCGCCTGGTTTGCGAGCCCGCGATTTCGGGCGCCGGCCGGCGCCCCCTTGCCTCTTGCCACGCTGGCCGCGCC
CTGCGGCGTGCGCGCGATTGCGGTCCGCGCCCTCGACAAGCTCAAATTGCCTTTTGTCGAGGCATTCGTCGGCGGCGGTG
TTGCAGCCGTCGTGGCTGCCGCGCAGGCCGGCCTCGCCGTCGCGCCGCTGGCACGCCGGATCGCGCCGGGAGGGCTGCTC
GACGTCGGACCAACGCTCGGGCTGCCGAAGCTGGGGCGATCGAGGGTGATCCTGCACGCCAAGGTCGGTGACACGGAGAA
GCGCGCCGCCTTGCGCGCGCTGGCGGCGGCATTCCGAAGCGCTGCGACATCGAATTAA

Upstream 100 bases:

>100_bases
GAGGCGGCGACGCCGCGTGCACCACCAACCTAGTCCCCGCCGCATCATTTCTGTATGCTATTGCGTCTGATATCAATGAT
AAGCGAACCGAATATTAGAG

Downstream 100 bases:

>100_bases
TTGACGCGGAGCGAACGTCAGGTAGCATAGGTTAATTTCGGAGCTCAGGAGCCGCGGCTTGAACCGTCTCTTGACCGCAG
CTGACACCGTCAGTGCTGCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MTPTLDVSAVRAFLLVCDLKSFTRSAEALGTTQAAVSLKLQRLETALGKRLLERSPRAVQLTADGAAFVDNARTLVAAHD
AALAGGSSERPRLSLGISDHAAGPELVPMLQQFQAIVTRLSLSVSIGFSRDLLDSYDAGTLDAIIIRQEASRRGGETLAD
DEFAWFASPRFRAPAGAPLPLATLAAPCGVRAIAVRALDKLKLPFVEAFVGGGVAAVVAAAQAGLAVAPLARRIAPGGLL
DVGPTLGLPKLGRSRVILHAKVGDTEKRAALRALAAAFRSAATSN

Sequences:

>Translated_285_residues
MTPTLDVSAVRAFLLVCDLKSFTRSAEALGTTQAAVSLKLQRLETALGKRLLERSPRAVQLTADGAAFVDNARTLVAAHD
AALAGGSSERPRLSLGISDHAAGPELVPMLQQFQAIVTRLSLSVSIGFSRDLLDSYDAGTLDAIIIRQEASRRGGETLAD
DEFAWFASPRFRAPAGAPLPLATLAAPCGVRAIAVRALDKLKLPFVEAFVGGGVAAVVAAAQAGLAVAPLARRIAPGGLL
DVGPTLGLPKLGRSRVILHAKVGDTEKRAALRALAAAFRSAATSN
>Mature_284_residues
TPTLDVSAVRAFLLVCDLKSFTRSAEALGTTQAAVSLKLQRLETALGKRLLERSPRAVQLTADGAAFVDNARTLVAAHDA
ALAGGSSERPRLSLGISDHAAGPELVPMLQQFQAIVTRLSLSVSIGFSRDLLDSYDAGTLDAIIIRQEASRRGGETLADD
EFAWFASPRFRAPAGAPLPLATLAAPCGVRAIAVRALDKLKLPFVEAFVGGGVAAVVAAAQAGLAVAPLARRIAPGGLLD
VGPTLGLPKLGRSRVILHAKVGDTEKRAALRALAAAFRSAATSN

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=257, Percent_Identity=28.0155642023346, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 29543; Mature: 29412

Theoretical pI: Translated: 10.75; Mature: 10.75

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPTLDVSAVRAFLLVCDLKSFTRSAEALGTTQAAVSLKLQRLETALGKRLLERSPRAVQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
LTADGAAFVDNARTLVAAHDAALAGGSSERPRLSLGISDHAAGPELVPMLQQFQAIVTRL
EECCCCHHHCCCCEEEEECHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHH
SLSVSIGFSRDLLDSYDAGTLDAIIIRQEASRRGGETLADDEFAWFASPRFRAPAGAPLP
HHEEEECCCHHHHHCCCCCCHHHEEEECHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCC
LATLAAPCGVRAIAVRALDKLKLPFVEAFVGGGVAAVVAAAQAGLAVAPLARRIAPGGLL
HHHHHCCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCCCE
DVGPTLGLPKLGRSRVILHAKVGDTEKRAALRALAAAFRSAATSN
ECCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TPTLDVSAVRAFLLVCDLKSFTRSAEALGTTQAAVSLKLQRLETALGKRLLERSPRAVQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
LTADGAAFVDNARTLVAAHDAALAGGSSERPRLSLGISDHAAGPELVPMLQQFQAIVTRL
EECCCCHHHCCCCEEEEECHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHH
SLSVSIGFSRDLLDSYDAGTLDAIIIRQEASRRGGETLADDEFAWFASPRFRAPAGAPLP
HHEEEECCCHHHHHCCCCCCHHHEEEECHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCC
LATLAAPCGVRAIAVRALDKLKLPFVEAFVGGGVAAVVAAAQAGLAVAPLARRIAPGGLL
HHHHHCCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCCCE
DVGPTLGLPKLGRSRVILHAKVGDTEKRAALRALAAAFRSAATSN
ECCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]